Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Forward (+)

4910629 .. 4912289

Gene Structure 1661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTGGTTTCCGGTTTCACCAGTATCAGGTGGTTGGGAGAGCCCTCCCGACAGAGAACGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTAGAAATGAAGTATGCGCCAAGTCCAAGTTCTGGTACTTCATGAGGAAACTGAAGAAGGTGAAGAAAAGCAACGGACAGATGCTTGCCATCAATGAGATTTTCGAGAAGAACCCAACGACCATCAAGAACTACGGGATCTGGTTGCGTTATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGTACCGTGACACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTCATAGAGTGAGGTTCCCTTGCATTCAGATCATCAAGACTGCGACTGTCCCTGCAAAGCTTTGCAAGAGAGAGATCACCAAGCAGTTCCATAACTCGAAGATCAAGTTCCCTCTTGTTTTCAGGAAGGTCAGACCACCAAGCAGGAAGCTTAAGACTACATACAAGGCATCAAAACCTAACCTTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010154 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0022414 GO:0022625 GO:0022626 GO:0030054 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040007 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044706 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0061458 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

178

Amino Acids

21.31

Weight (kDa)

10.35

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	7 - 128	1.3e-22	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	264
AccB7I	CCANNNNNTGG	1 cut(s)	129
AclWI	GGATC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	5 cut(s)	134, 266, 278, 287, 326
AfiI	CCNNNNNNNGG	2 cut(s)	28, 129
AflII	CTTAAG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	91, 403, 493
AluI	AGCT	3 cut(s)	91, 403, 493
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	11, 169, 412
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	3 cut(s)	194, 227, 328
BfmI	CTRYAG	1 cut(s)	79
BfrI	CTTAAG	1 cut(s)	494
BglII	AGATCT	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	266, 359
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	168, 521
BmuI	ACTGGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 129
Bse1I	ACTGG	2 cut(s)	22, 265
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	28, 129
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	22, 265
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	28, 129
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	46, 69
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	5 cut(s)	75, 234, 372, 417, 444
BspCNI	CTCAG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	266, 359
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	494
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	2 cut(s)	22, 265
BssMI	GATC	5 cut(s)	75, 234, 372, 417, 444
Bst4CI	ACNGT	2 cut(s)	290, 391
BstAFI	CTTAAG	1 cut(s)	494
BstAUI	TGTACA	2 cut(s)	276, 324
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	72, 330
BstF5I	GGATG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	5 cut(s)	78, 237, 375, 420, 447
BstMBI	GATC	5 cut(s)	75, 234, 372, 417, 444
BstNSI	RCATGY	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	75, 234
BstYI	RGATCY	2 cut(s)	75, 234
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	1 cut(s)	116
Csp6I	GTAC	5 cut(s)	133, 265, 277, 286, 325
CviAII	CATG	3 cut(s)	139, 274, 532
CviJI	RGCY	6 cut(s)	44, 91, 255, 338, 403, 493
CviKI_1	RGCY	6 cut(s)	44, 91, 255, 338, 403, 493
CviQI	GTAC	5 cut(s)	133, 265, 277, 286, 325
DdeI	CTNAG	2 cut(s)	72, 330
DpnI	GATC	5 cut(s)	77, 236, 374, 419, 446
DpnII	GATC	5 cut(s)	75, 234, 372, 417, 444
Eco24I	GRGCYC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	3 cut(s)	142, 277, 535
FaiI	YATR	7 cut(s)	112, 140, 275, 348, 435, 505, 533
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	3 cut(s)	138, 273, 531
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	46
GlaI	GCGC	1 cut(s)	115
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	142, 277, 535
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	3 cut(s)	89, 401, 491
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	11, 169, 412
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	252, 372, 476
Hpy188III	TCNNGA	6 cut(s)	49, 139, 202, 223, 379, 466
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	148, 463
HpyCH4III	ACNGT	2 cut(s)	290, 391
HpyCH4V	TGCA	3 cut(s)	366, 398, 408
HpyF3I	CTNAG	2 cut(s)	72, 330
Hsp92II	CATG	3 cut(s)	142, 277, 535
HspAI	GCGC	1 cut(s)	114
KpnI	GGTACC	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	75, 234, 372, 417, 444
LmnI	GCTCC	1 cut(s)	316
LweI	GCATC	2 cut(s)	168, 521
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	77, 236, 374, 419, 446
MboI	GATC	5 cut(s)	75, 234, 372, 417, 444
MboII	GAAGA	4 cut(s)	163, 172, 217, 454
MflI	RGATCY	2 cut(s)	75, 234
MhlI	GDGCHC	2 cut(s)	46, 69
MnlI	CCTC	4 cut(s)	56, 135, 348, 465
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	366
NdeII	GATC	5 cut(s)	75, 234, 372, 417, 444
NlaIII	CATG	3 cut(s)	142, 277, 535
NlaIV	GGNNCC	2 cut(s)	266, 359
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	277
PagI	TCATGA	1 cut(s)	138
PciI	ACATGT	1 cut(s)	273
PctI	GAATGC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	129
PscI	ACATGT	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	266, 359
PsuI	RGATCY	2 cut(s)	75, 234
RsaI	GTAC	5 cut(s)	134, 266, 278, 287, 326
RsaNI	GTAC	5 cut(s)	133, 265, 277, 286, 325
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	495
Sau3AI	GATC	5 cut(s)	75, 234, 372, 417, 444
SduI	GDGCHC	2 cut(s)	46, 69
SetI	ASST	9 cut(s)	33, 93, 159, 359, 405, 474, 495, 523, 528
SfaNI	GCATC	2 cut(s)	168, 521
SfcI	CTRYAG	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	290, 391
TaqI	TCGA	2 cut(s)	201, 440
TatI	WGTACW	2 cut(s)	276, 324
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	101, 120, 127, 520
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	494
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.