Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Forward (+)

35761522 .. 35763915

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1263500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCAAATGGCAATCCATCCATCCAGAAATTGGTCGGCACGACTCTCAAACTGCCTATTAGTAATATCACGTGACAGTATATCTGTTACGTTGCAACTTTTGTTTTCATCGGTCCCATTTTTCCACCAGTACCAGGTCGTCGGGAGGAAGCTCCCTACCGAGACCGATGAGCAGCCGAAGATATACAGAATGAAGCTGTGGGCCACCAACGAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTTCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAAGTTCTTGCCATCAATGAGATCTTTGAGAAGAACCCAACAACCATCAAGAACTATGGTATCTGGTTGAGGTATCAAAGCAGGACGGGTTACCACAACATGTACAAAGAGTACCGTGACACCACTCTAAATGGTGCCGTGGAGCAGATGTACATTGAGATGGCATCTCGCCACAGGGTCAGGTTTCCTTGTATCCAGATCATCAAGACTGCCACCATCCCCGCTAAGCTTTGCAAGAGGGAAAGCACCAAGCAATTCCACAACTCCAAGATCAAGTTCCCGTTGGTGTTCAGGAAGGTTAGACCACCATCCAGGAAGTTGAAGACTACTTACAAGGCATCGAGGCCCAACTTGTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

214

Amino Acids

25.3

Weight (kDa)

10.47

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	42 - 163	7e-24	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	413
AccB7I	CCANNNNNTGG	2 cut(s)	30, 234
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	275
AcvI	CACGTG	1 cut(s)	71
AfaI	GTAC	4 cut(s)	131, 383, 392, 431
AfiI	CCNNNNNNNGG	3 cut(s)	30, 133, 234
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	132, 590
AjuI	GAANNNNNNNTTGG	4 cut(s)	215, 247, 539, 571
AluBI	AGCT	4 cut(s)	151, 196, 253, 508
AluI	AGCT	4 cut(s)	151, 196, 253, 508
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	3 cut(s)	201, 277, 623
ApeKI	GCWGC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	112, 201, 624
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	112
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	413
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BbrPI	CACGTG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	7 cut(s)	24, 28, 299, 332, 433, 503, 595
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	134, 592
BciVI	GTATCC	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	173
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	134, 592
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	112, 201, 624
BmiI	GGNNCC	2 cut(s)	114, 415
BmrFI	CCNGG	2 cut(s)	134, 592
BmsI	GCATC	2 cut(s)	452, 626
BpiI	GAAGAC	1 cut(s)	608
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaAI	YACGTR	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 133, 234
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	134, 592
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	4 cut(s)	16, 20, 495, 587
BseLI	CCNNNNNNNGG	3 cut(s)	30, 133, 234
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	203, 279, 625
BshNI	GGYRCC	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	30, 133, 234
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	203, 279, 625
Bso31I	GGTCTC	1 cut(s)	155
Bsp1407I	TGTACA	2 cut(s)	381, 429
Bsp143I	GATC	3 cut(s)	300, 477, 549
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	1 cut(s)	501
BspANI	GGCC	3 cut(s)	203, 279, 625
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	114, 415
BspQI	GCTCTTC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	280
BsrGI	TGTACA	2 cut(s)	381, 429
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	3 cut(s)	300, 477, 549
Bst2UI	CCWGG	2 cut(s)	134, 592
Bst4CI	ACNGT	2 cut(s)	77, 395
Bst6I	CTCTTC	1 cut(s)	263
BstAUI	TGTACA	2 cut(s)	381, 429
BstBAI	YACGTR	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	245, 504
BstDSI	CCRYGG	1 cut(s)	417
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	4 cut(s)	16, 20, 495, 587
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	303, 480, 552
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	300, 477, 549
BstNI	CCWGG	2 cut(s)	134, 592
BstNSI	RCATGY	1 cut(s)	382
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	132, 590
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	3 cut(s)	203, 279, 625
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	4 cut(s)	16, 20, 495, 587
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	112, 201, 624
CsiI	ACCWGGT	1 cut(s)	132
Csp6I	GTAC	4 cut(s)	130, 382, 391, 430
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	8 cut(s)	151, 175, 196, 203, 253, 279, 508, 625
CviKI_1	RGCY	8 cut(s)	151, 175, 196, 203, 253, 279, 508, 625
CviQI	GTAC	4 cut(s)	130, 382, 391, 430
DdeI	CTNAG	2 cut(s)	245, 504
DpnI	GATC	3 cut(s)	302, 479, 551
DpnII	GATC	3 cut(s)	300, 477, 549
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	275
Eco72I	CACGTG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	132, 590
FaeI	CATG	1 cut(s)	382
FaiI	YATR	5 cut(s)	80, 184, 336, 380, 638
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	378
FauI	CCCGC	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	4 cut(s)	3, 7, 482, 574
Fsp4HI	GCNGC	1 cut(s)	173
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	203, 279, 625
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	6 cut(s)	24, 142, 328, 475, 484, 571
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	253, 568
HpyCH4III	ACNGT	2 cut(s)	77, 395
HpyCH4IV	ACGT	2 cut(s)	70, 89
HpyCH4V	TGCA	3 cut(s)	4, 94, 513
HpyF3I	CTNAG	2 cut(s)	245, 504
HpySE526I	ACGT	2 cut(s)	70, 89
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	300, 477, 549
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	156, 421
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	452, 626
MabI	ACCWGGT	1 cut(s)	132
MaeII	ACGT	2 cut(s)	70, 89
MaeIII	GTNAC	4 cut(s)	71, 85, 368, 395
MalI	GATC	3 cut(s)	302, 479, 551
MboI	GATC	3 cut(s)	300, 477, 549
MboII	GAAGA	6 cut(s)	190, 268, 277, 280, 322, 613
MflI	RGATCY	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	2 cut(s)	28, 533
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	138, 205, 240, 342, 510, 615
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	134, 592
MvaI	CCWGG	2 cut(s)	134, 592
MvnI	CGCG	1 cut(s)	219
NdeII	GATC	3 cut(s)	300, 477, 549
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	114, 415
NmuCI	GTSAC	2 cut(s)	71, 395
NspI	RCATGY	1 cut(s)	382
PciI	ACATGT	1 cut(s)	378
PciSI	GCTCTTC	1 cut(s)	263
PflMI	CCANNNNNTGG	2 cut(s)	30, 234
PfoI	TCCNGGA	1 cut(s)	590
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	36
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	71
PscI	ACATGT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	132, 590
PspCI	CACGTG	1 cut(s)	71
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	132, 590
PspN4I	GGNNCC	2 cut(s)	114, 415
PspPI	GGNCC	3 cut(s)	112, 201, 624
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	4 cut(s)	131, 383, 392, 431
RsaNI	GTAC	4 cut(s)	130, 382, 391, 430
RseI	CAYNNNNRTG	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	263
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	300, 477, 549
Sau96I	GGNCC	3 cut(s)	112, 201, 624
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	134, 592
SexAI	ACCWGGT	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	452, 626
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	28, 533
SsiI	CCGC	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	132, 590
TaaI	ACNGT	2 cut(s)	77, 395
TaiI	ACGT	2 cut(s)	73, 92
TaqI	TCGA	1 cut(s)	620
TaqII	GACCGA	2 cut(s)	100, 179
TasI	AATT	2 cut(s)	28, 533
TatI	WGTACW	2 cut(s)	381, 429
TseFI	GTSAC	2 cut(s)	71, 395
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	2 cut(s)	71, 395
TspDTI	ATGAA	2 cut(s)	96, 206
Van91I	CCANNNNNTGG	2 cut(s)	30, 234
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.