Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041018.1

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1129

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041018.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atttttgagaaaaatccaactacaatcaacaactatggtatttggctgcggtaccagagtaggactggttatcacaacatgtacaaggagtacagaaatacaactctgaatggtgctgtagaagacatgtacactgagatggcatctcgtcacagggtgaggtctccgtgcatccagatcatcaagacagcaactatcccagcaaaactctgcaagagggagagcaccaagcagttccataactccaagatcaagttcccattggtgctcaggaagattaggcccccatctaggaagctgaagacaacttacaaggcatccaggcccaacatctttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

113

Amino Acids

13.43

Weight (kDa)

10.42

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AciI	CCGC	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	4 cut(s)	53, 83, 92, 131
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	2 cut(s)	78, 126
AjnI	CCWGG	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw21I	GWGCWC	2 cut(s)	227, 270
Alw26I	GTCTC	1 cut(s)	168
AoxI	GGCC	2 cut(s)	281, 323
ApeKI	GCWGC	1 cut(s)	46
Asp718I	GGTACC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	282, 324
AsuHPI	GGTGA	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	43, 76
BanI	GGYRCC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BbsI	GAAGAC	2 cut(s)	129, 308
Bbv12I	GWGCWC	2 cut(s)	227, 270
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	2 cut(s)	133, 295
BciT130I	CCWGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	282, 324
BmiI	GGNNCC	2 cut(s)	53, 284
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	3 cut(s)	152, 180, 326
BpiI	GAAGAC	2 cut(s)	129, 308
Bpu10I	CCTNAGC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	171, 317
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	126, 283
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	33
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	2 cut(s)	283, 325
BshNI	GGYRCC	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	227, 270
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	283, 325
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	227, 270
Bsp1407I	TGTACA	2 cut(s)	81, 129
Bsp143I	GATC	2 cut(s)	177, 249
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	283, 325
BspCNI	CTCAG	2 cut(s)	127, 282
BspLI	GGNNCC	2 cut(s)	53, 284
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	168
BsrGI	TGTACA	2 cut(s)	81, 129
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	177, 249
Bst2UI	CCWGG	1 cut(s)	322
BstAUI	TGTACA	2 cut(s)	81, 129
BstDEI	CTNAG	2 cut(s)	135, 269
BstF5I	GGATG	2 cut(s)	171, 317
BstKTI	GATC	2 cut(s)	180, 252
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	177, 249
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	2 cut(s)	82, 130
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	129, 308
BsuRI	GGCC	2 cut(s)	283, 325
BtsCI	GGATG	2 cut(s)	171, 317
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	282, 324
Csp6I	GTAC	4 cut(s)	52, 82, 91, 130
CviAII	CATG	2 cut(s)	79, 127
CviJI	RGCY	4 cut(s)	46, 283, 298, 325
CviKI_1	RGCY	4 cut(s)	46, 283, 298, 325
CviQI	GTAC	4 cut(s)	52, 82, 91, 130
DdeI	CTNAG	2 cut(s)	135, 269
DpnI	GATC	2 cut(s)	179, 251
DpnII	GATC	2 cut(s)	177, 249
DraIII	CACNNNGTG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	82, 130
FaiI	YATR	5 cut(s)	36, 80, 128, 240, 338
FatI	CATG	2 cut(s)	78, 126
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	2 cut(s)	158, 304
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	283, 325
Hin1II	CATG	2 cut(s)	82, 130
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	3 cut(s)	175, 184, 271
Hpy8I	GTNNAC	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	171, 213
HpyF3I	CTNAG	2 cut(s)	135, 269
Hsp92II	CATG	2 cut(s)	82, 130
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	177, 249
LpnPI	CCDG	8 cut(s)	51, 68, 139, 188, 213, 256, 307, 334
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	3 cut(s)	152, 180, 326
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	2 cut(s)	179, 251
MboI	GATC	2 cut(s)	177, 249
MboII	GAAGA	3 cut(s)	134, 286, 313
MhlI	GDGCHC	2 cut(s)	227, 270
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	2 cut(s)	153, 210
MslI	CAYNNNNRTG	2 cut(s)	137, 335
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
NdeII	GATC	2 cut(s)	177, 249
NlaIII	CATG	2 cut(s)	82, 130
NlaIV	GGNNCC	2 cut(s)	53, 284
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	2 cut(s)	82, 130
PciI	ACATGT	2 cut(s)	78, 126
PkrI	GCNGC	1 cut(s)	48
PscI	ACATGT	2 cut(s)	78, 126
Psp6I	CCWGG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	53, 284
PspPI	GGNCC	2 cut(s)	282, 324
RsaI	GTAC	4 cut(s)	53, 83, 92, 131
RsaNI	GTAC	4 cut(s)	52, 82, 91, 130
RseI	CAYNNNNRTG	2 cut(s)	137, 335
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	177, 249
Sau96I	GGNCC	2 cut(s)	282, 324
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	2 cut(s)	227, 270
SetI	ASST	2 cut(s)	164, 300
SfaNI	GCATC	3 cut(s)	152, 180, 326
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	2 cut(s)	137, 335
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	320
TatI	WGTACW	3 cut(s)	81, 90, 129
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	139
XceI	RCATGY	2 cut(s)	82, 130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.