Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Reverse (-)

19415878 .. 19418120

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTACCTTCAGGTTTCATCAGTACCAGGTGGTGGGAAGAGCCCTCCCTTCTGAAAAAGATGAGCATCCCAAGATCTACCGTATGAAGCTCTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAAGTGAAGAAAAGCAATGGACAAGTTTTGGCCATTAATGAGATATTTGAGAAAAGTCCAACAACGATCAAGAACTACGGAATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATACCGGGACACTACTCTCAATGGTGCTGTTGAAGACATGTACACTGAGATGGCATCTCGTCACAGGGTGAGGTCTCCATGCATCCAAATCATTAAGACAGCCACTATCCCTGCAAAACTTTGCAAGAGGGAGAGCACCAAGCAGTTCCATAACTCCAAGATCAAATTCCCATTGGTGTTCAAGAAGGTTAGGCCCCCAACCAGGAAGCTCAAGACGACATACAAGGCAACTAGGCCCAACATCTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L18A TAXi_C TAXi_N

Protein Analysis

179

Amino Acids

21.25

Weight (kDa)

10.36

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	234, 449
AdeI	CACNNNGTG	1 cut(s)	352
AfaI	GTAC	4 cut(s)	26, 134, 278, 326
AfiI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
AflIII	ACRYGT	2 cut(s)	273, 321
AgsI	TTSAA	3 cut(s)	151, 317, 466
AjnI	CCWGG	2 cut(s)	27, 485
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 434, 466
AluBI	AGCT	2 cut(s)	91, 493
AluI	AGCT	2 cut(s)	91, 493
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	4 cut(s)	96, 183, 476, 518
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	2 cut(s)	234, 449
AseI	ATTAAT	1 cut(s)	189
AspS9I	GGNCC	4 cut(s)	96, 109, 477, 519
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	328
BciT130I	CCWGG	2 cut(s)	29, 487
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	516
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	3 cut(s)	29, 290, 487
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	4 cut(s)	96, 109, 477, 519
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	3 cut(s)	29, 290, 487
BmsI	GCATC	3 cut(s)	76, 347, 375
BpiI	GAAGAC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 129, 486
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	29, 487
BseGI	GGATG	2 cut(s)	67, 366
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	228
BshFI	GGCC	4 cut(s)	98, 185, 478, 520
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	98, 185, 478, 520
Bso31I	GGTCTC	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	46, 422
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	3 cut(s)	75, 219, 444
BspANI	GGCC	4 cut(s)	98, 185, 478, 520
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	479
BspQI	GCTCTTC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	75, 219, 444
Bst2UI	CCWGG	2 cut(s)	29, 487
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	34
BstAUI	TGTACA	2 cut(s)	276, 324
BstDEI	CTNAG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	67, 366
BstKTI	GATC	3 cut(s)	78, 222, 447
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	3 cut(s)	75, 219, 444
BstNI	CCWGG	2 cut(s)	29, 487
BstNSI	RCATGY	2 cut(s)	277, 325
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	3 cut(s)	27, 288, 485
BstV1I	GCAGC	1 cut(s)	228
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	98, 185, 478, 520
BtsCI	GGATG	2 cut(s)	67, 366
BtsIMutI	CAGTG	1 cut(s)	327
Cfr13I	GGNCC	4 cut(s)	96, 109, 477, 519
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	4 cut(s)	25, 133, 277, 325
CviAII	CATG	3 cut(s)	274, 322, 363
CviQI	GTAC	4 cut(s)	25, 133, 277, 325
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	77, 221, 446
DpnII	GATC	3 cut(s)	75, 219, 444
DraIII	CACNNNGTG	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	477
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	27, 485
EcoRV	GATATC	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	3 cut(s)	277, 325, 366
FaiI	YATR	6 cut(s)	86, 275, 323, 364, 435, 505
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	273, 321, 362
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	2 cut(s)	54, 353
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	98, 185, 478, 520
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	3 cut(s)	277, 325, 366
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	55, 252
Hpy188III	TCNNGA	3 cut(s)	223, 466, 496
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	3 cut(s)	19, 60, 463
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	366, 398, 408
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	277, 325, 366
Kzo9I	GATC	3 cut(s)	75, 219, 444
LguI	GCTCTTC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	3 cut(s)	76, 347, 375
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	2 cut(s)	4, 344
MalI	GATC	3 cut(s)	77, 221, 446
MboI	GATC	3 cut(s)	75, 219, 444
MboII	GAAGA	4 cut(s)	51, 163, 172, 329
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	46, 422
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	2 cut(s)	234, 449
MluNI	TGGCCA	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	5 cut(s)	56, 100, 135, 348, 405
Mox20I	TGGCCA	1 cut(s)	185
Mph1103I	ATGCAT	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	2 cut(s)	189, 378
MslI	CAYNNNNRTG	2 cut(s)	332, 530
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	3 cut(s)	29, 290, 487
MvaI	CCWGG	2 cut(s)	29, 487
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	3 cut(s)	75, 219, 444
NlaIII	CATG	3 cut(s)	277, 325, 366
NlaIV	GGNNCC	1 cut(s)	479
NmuCI	GTSAC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	2 cut(s)	277, 325
PciI	ACATGT	2 cut(s)	273, 321
PciSI	GCTCTTC	1 cut(s)	34
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
PkrI	GCNGC	1 cut(s)	243
PscI	ACATGT	2 cut(s)	273, 321
PshBI	ATTAAT	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	27, 485
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	2 cut(s)	27, 485
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	4 cut(s)	96, 109, 477, 519
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	4 cut(s)	26, 134, 278, 326
RsaNI	GTAC	4 cut(s)	25, 133, 277, 325
RseI	CAYNNNNRTG	2 cut(s)	332, 530
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	189, 378
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	3 cut(s)	75, 219, 444
Sau96I	GGNCC	4 cut(s)	96, 109, 477, 519
ScrFI	CCNGG	3 cut(s)	29, 290, 487
SduI	GDGCHC	2 cut(s)	46, 422
SetI	ASST	8 cut(s)	11, 17, 33, 93, 111, 359, 474, 495
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	3 cut(s)	76, 347, 375
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	332, 530
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	234, 449
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	27, 288, 485
TaaI	ACNGT	1 cut(s)	83
TasI	AATT	2 cut(s)	234, 449
TatI	WGTACW	2 cut(s)	276, 324
Tru1I	TTAA	2 cut(s)	189, 378
Tru9I	TTAA	2 cut(s)	189, 378
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	8, 101
TspGWI	ACGGA	2 cut(s)	101, 246
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
VpaK11BI	GGWCC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	2 cut(s)	234, 449
XceI	RCATGY	2 cut(s)	277, 325
XspI	CTAG	1 cut(s)	516
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.