Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Reverse (-)

10498351 .. 10501498

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACGAAGAGGCAGCAAAACCTAGAGACTCCACCGTGAATCAGCAACATCAATACTATTACGGAACGTTTCAAGGCGTTGCGAATTTTCCTACTCCTACTCCACCACCGCAATTTATGCAACCACAGCATCCGATTACTACGTTTCCTGGACATGCTTACCAAAATCTCCAAGGTCATGGTGGTGGTGTGAATTATGCTCAAGGATTCCCAGTTGTTGTTCCTGATTATACAGTGGTTGAGGTGAGACCAATGATAGAGCATGAACTTCCTTGTTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATCATGGGCTTCTTGTTCGGTGGGATCCCTTGGTACCTCGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCACCGCGAGAAAGCTGGTTACGTTGCCTGTTCAATCGCATCCGTTGTCTATTTGATTGCCGTCATGCTCGGGATGACTGGGGATATTAACATCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

158

Amino Acids

17.47

Weight (kDa)

5.29

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	339
AccII	CGCG	1 cut(s)	384
AciI	CCGC	2 cut(s)	110, 382
AclI	AACGTT	1 cut(s)	68
AclWI	GGATC	2 cut(s)	325, 338
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	74, 411
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
Alw26I	GTCTC	2 cut(s)	21, 241
AlwI	GGATC	2 cut(s)	325, 338
Ama87I	CYCGRG	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	85
Asp718I	GGTACC	1 cut(s)	339
AsuHPI	GGTGA	2 cut(s)	256, 371
AvaI	CYCGRG	1 cut(s)	446
BaeI	ACNNNNGTAYC	2 cut(s)	331, 364
BamHI	GGATCC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	21, 241
BfaI	CTAG	2 cut(s)	24, 362
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	332, 341
BmrFI	CCNGG	1 cut(s)	150
BmrI	ACTGGG	2 cut(s)	206, 465
BmsI	GCATC	2 cut(s)	139, 425
BmuI	ACTGGG	2 cut(s)	206, 465
BpuEI	CTTGAG	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	172, 335, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	212, 460
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	172, 335, 343
BseGI	GGATG	3 cut(s)	130, 416, 456
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	212, 460
BseXI	GCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	21, 241
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	330, 376
BspACI	CCGC	2 cut(s)	110, 382
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	332, 341
BspPI	GGATC	2 cut(s)	325, 338
BspT107I	GGYRCC	1 cut(s)	339
BspTNI	GGTCTC	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	212, 460
BssECI	CCNNGG	3 cut(s)	172, 335, 343
BssMI	GATC	2 cut(s)	330, 376
BssT1I	CCWWGG	2 cut(s)	172, 335
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	37, 235
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstF5I	GGATG	3 cut(s)	130, 416, 456
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	2 cut(s)	333, 379
BstMAI	GTCTC	2 cut(s)	21, 241
BstMBI	GATC	2 cut(s)	330, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 127
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	330
BstXI	CCANNNNNNTGG	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	130, 416, 456
BtsIMutI	CAGTG	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	6 cut(s)	155, 179, 263, 289, 310, 442
CviJI	RGCY	4 cut(s)	282, 294, 315, 392
CviKI_1	RGCY	4 cut(s)	282, 294, 315, 392
CviQI	GTAC	1 cut(s)	340
DpnI	GATC	2 cut(s)	332, 378
DpnII	GATC	2 cut(s)	330, 376
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	172, 335
Eco31I	GGTCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	172, 335
ErhI	CCWWGG	2 cut(s)	172, 335
FaeI	CATG	6 cut(s)	158, 182, 266, 292, 313, 445
FaiI	YATR	9 cut(s)	119, 156, 180, 198, 231, 264, 290, 311, 443
FatI	CATG	6 cut(s)	154, 178, 262, 288, 309, 441
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	3 cut(s)	117, 403, 463
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	24, 362
GluI	GCNGC	1 cut(s)	15
Hin1II	CATG	6 cut(s)	158, 182, 266, 292, 313, 445
HinfI	GANTC	3 cut(s)	29, 40, 207
HphI	GGTGA	2 cut(s)	256, 371
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	224, 448
HpyCH4III	ACNGT	2 cut(s)	37, 235
HpyCH4IV	ACGT	3 cut(s)	68, 143, 399
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 127
HpySE526I	ACGT	3 cut(s)	68, 143, 399
Hsp92II	CATG	6 cut(s)	158, 182, 266, 292, 313, 445
KpnI	GGTACC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	330, 376
LpnPI	CCDG	9 cut(s)	135, 162, 225, 237, 280, 378, 418, 441, 457
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	2 cut(s)	139, 425
MaeI	CTAG	2 cut(s)	24, 362
MaeII	ACGT	3 cut(s)	68, 143, 399
MaeIII	GTNAC	2 cut(s)	364, 395
MalI	GATC	2 cut(s)	332, 378
MboI	GATC	2 cut(s)	330, 376
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	330
MluCI	AATT	3 cut(s)	85, 113, 193
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	3 cut(s)	4, 235, 353
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	118, 127
NdeII	GATC	2 cut(s)	330, 376
NlaIII	CATG	6 cut(s)	158, 182, 266, 292, 313, 445
NlaIV	GGNNCC	2 cut(s)	332, 341
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	40, 207
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	332, 341
PsuI	RGATCY	1 cut(s)	330
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	330, 376
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	8 cut(s)	25, 71, 146, 178, 246, 345, 394, 402
SfaNI	GCATC	2 cut(s)	139, 425
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	3 cut(s)	85, 113, 193
SsiI	CCGC	2 cut(s)	110, 382
SspMI	CTAG	2 cut(s)	24, 362
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	172, 335
TaaI	ACNGT	2 cut(s)	37, 235
TaiI	ACGT	3 cut(s)	71, 146, 402
TasI	AATT	3 cut(s)	85, 113, 193
TfiI	GAWTC	2 cut(s)	40, 207
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	2 cut(s)	78, 409
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XspI	CTAG	2 cut(s)	24, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.