Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Forward (+)

27729104 .. 27730914

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGCGACAACTCCAAGACCAGAACTCTCTCCGGCGACCAGCAGGGCCAGAGCCAGAGCCAGAGCCAGCAGCAGTACTACGGCACTTTCCAAGGTGTCGCCAACTACTACCCTCCGCCTCCACAGCCTCCACCTGAGCCGGTCGTCGGTTTTCCTCAGCCCGTCCCACCTCCCGGTTACTCCGGCCGTCCTCCCTCGCCTCCCCATCACCACCACCATCACCAACATGGATACCAAACGGTCACTGGTTACGCTGTTGTGGAGGGAAGACCTGTTAGTGAACGCCGCCTTCCTTGCTGCGGCATCGGCGTAGGCTGGTTATTGTTTATAACAGGGTTCTTTCTTGGAGGCGTCCCCTGGTATGTTGGAACTTTCATCCTACTTTGTGTGCGGGTGGACTACAGAGAAAAACCCGGATATGTAGCATGCGCGATAGCTTCGATTCTTGCTGTGATGGCTATTATTCTGGGCGTAACAAAGGGAAGTGAAAACCTGATGAGGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.52

Weight (kDa)

8.72

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AccII	CGCG	1 cut(s)	431
AciI	CCGC	4 cut(s)	116, 286, 300, 391
AcoI	YGGCCR	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	3 cut(s)	146, 173, 299
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
AoxI	GGCC	2 cut(s)	46, 184
ApeKI	GCWGC	2 cut(s)	70, 297
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	2 cut(s)	174, 414
AsuHPI	GGTGA	2 cut(s)	200, 212
BbsI	GAAGAC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	82, 284
BccI	CCATC	3 cut(s)	213, 225, 448
BceAI	ACGGC	2 cut(s)	97, 171
BciT130I	CCWGG	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	224
BcnI	CCSGG	2 cut(s)	174, 414
BfmI	CTRYAG	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	4 cut(s)	71, 286, 298, 301
BlsI	GCNGC	4 cut(s)	72, 287, 299, 302
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	3 cut(s)	174, 358, 414
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	3 cut(s)	174, 358, 414
BmsI	GCATC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	274
Bpu10I	CCTNAGC	2 cut(s)	135, 156
BpuMI	CCSGG	2 cut(s)	174, 414
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	91, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 173, 299
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	91, 356
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	146, 173, 299
BseMII	CTCAG	2 cut(s)	126, 170
BseNI	ACTGG	1 cut(s)	250
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	82, 284
Bsh1236I	CGCG	1 cut(s)	431
Bsh1285I	CGRYCG	2 cut(s)	144, 187
BshFI	GGCC	2 cut(s)	48, 186
BsiEI	CGRYCG	2 cut(s)	144, 187
BsiSI	CCGG	5 cut(s)	33, 140, 174, 183, 414
BslFI	GGGAC	2 cut(s)	149, 338
BslI	CCNNNNNNNGG	3 cut(s)	146, 173, 299
BsmFI	GGGAC	2 cut(s)	149, 338
BsnI	GGCC	2 cut(s)	48, 186
BspACI	CCGC	4 cut(s)	116, 286, 300, 391
BspANI	GGCC	2 cut(s)	48, 186
BspCNI	CTCAG	2 cut(s)	127, 169
BspFNI	CGCG	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	91, 356
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	241
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	68, 427
BstDEI	CTNAG	2 cut(s)	135, 156
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	431
BstMCI	CGRYCG	2 cut(s)	144, 187
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 294, 306, 455
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	3 cut(s)	172, 356, 412
BstSFI	CTRYAG	1 cut(s)	400
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	82, 284
BstV2I	GAAGAC	1 cut(s)	274
BstZI	CGGCCG	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	48, 186
BtsCI	GGATG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	68, 427
CfoI	GCGC	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	227, 426
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	2 cut(s)	135, 156
EaeI	YGGCCR	1 cut(s)	184
EagI	CGGCCG	1 cut(s)	184
EciI	GGCGGA	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	230, 429
FaiI	YATR	5 cut(s)	228, 329, 363, 420, 427
FaqI	GGGAC	2 cut(s)	149, 338
FatI	CATG	2 cut(s)	226, 425
FauI	CCCGC	1 cut(s)	384
Fnu4HI	GCNGC	4 cut(s)	71, 286, 298, 301
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	71, 286, 298, 301
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	4 cut(s)	71, 286, 298, 301
HaeIII	GGCC	2 cut(s)	48, 186
HapII	CCGG	5 cut(s)	33, 140, 174, 183, 414
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	230, 429
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HinfI	GANTC	1 cut(s)	442
HpaII	CCGG	5 cut(s)	33, 140, 174, 183, 414
HphI	GGTGA	2 cut(s)	200, 212
Hpy166II	GTNNAC	2 cut(s)	281, 397
Hpy8I	GTNNAC	2 cut(s)	281, 397
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 294, 306, 455
HpyF3I	CTNAG	2 cut(s)	135, 156
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	230, 429
HspAI	GCGC	1 cut(s)	429
Lsp1109I	GCAGC	2 cut(s)	82, 284
LweI	GCATC	1 cut(s)	312
MaeIII	GTNAC	4 cut(s)	176, 241, 248, 472
MboII	GAAGA	1 cut(s)	279
MluCI	AATT	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	346
MseI	TTAA	2 cut(s)	504, 508
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	5 cut(s)	33, 140, 174, 183, 414
MspR9I	CCNGG	3 cut(s)	174, 358, 414
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	124, 294, 306, 455
NciI	CCSGG	2 cut(s)	174, 414
NlaIII	CATG	2 cut(s)	230, 429
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	429
PacI	TTAATTAA	1 cut(s)	508
PaeI	GCATGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	442
PkrI	GCNGC	4 cut(s)	72, 287, 299, 302
PsiI	TTATAA	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	504, 508
SatI	GCNGC	4 cut(s)	71, 286, 298, 301
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	174, 358, 414
SetI	ASST	7 cut(s)	97, 136, 172, 274, 439, 495, 503
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	4 cut(s)	116, 286, 300, 391
StyD4I	CCNGG	3 cut(s)	172, 356, 412
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	440
TasI	AATT	1 cut(s)	505
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	2 cut(s)	288, 303
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	2 cut(s)	504, 508
Tru9I	TTAA	2 cut(s)	504, 508
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	70, 297
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 242
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.