Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Reverse (-)

9787569 .. 9792076

Gene Structure 4508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAGCGACGACGCGAATTCCAAGGCCCGAGGACTTGCCGCCGACCACCAGAGCCAGCAGTACTACGGCACCTTCCAAGGCGTCGCTAACTACCCCCCTCCGCAGCCACCGTCCGAGCCCGTAGTCGGTTTCCCTACGCCGGTCCCTCCTCTCGGCTCCTCCGGCCGGCCTCCTCTACCTCCCCAGCGCCACCATCACCACCACCACCAGGGATACCAAACCGTCACCGGTTATGCTGTTGTTGAGGGAAGACCTGTGAGGGAACGAAGGCTTCCGTGCTGTGGTCTTGGAATTGGCTGGTTATTGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCTGGTATATTGGAACTTTTATTTTACTTTGTGTGAGGGTGGACTACAGAGAAAAACCTGGATATGTTGCATGCACATTAGCATTTCACCAGTACCAGGTGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCCAAGATCTACCGCATGAAGCTTTGGCACACCAATGAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGCTGAAGAAGGTCAAGAAGAGCAATGGCCAAATGCTTGCCATCAATGAGATTTTTGAGAAGAAACCTACTGTTGTTGAGAACTACGGTATTTGGTTGAGGTATCAAAGCAGGACAGGTTATCACAACATGTACAAGGAGTACCGTGACACCACTCTGAATGGGGCTGTGGATCAGATGTACACTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACTGCCACCATCCCGGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGATTTCCAGGAAGGTCAGGCCACCAACCAGGAAGTTGAAGACCACGTACAAGGCATCAAGGCCCAACTTGTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

313

Amino Acids

36.08

Weight (kDa)

10.01

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	142 - 263	4.6e-23	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	2 cut(s)	439, 534
AccII	CGCG	2 cut(s)	14, 519
AciI	CCGC	3 cut(s)	39, 101, 487
AclWI	GGATC	1 cut(s)	729
AcoI	YGGCCR	2 cut(s)	163, 577
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	2 cut(s)	566, 575
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	7 cut(s)	62, 431, 683, 692, 731, 826, 911
AfiI	CCNNNNNNNGG	9 cut(s)	125, 139, 152, 165, 208, 281, 433, 439, 534
AflIII	ACRYGT	1 cut(s)	678
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	901
AjnI	CCWGG	6 cut(s)	207, 338, 394, 432, 869, 890
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
AluBI	AGCT	3 cut(s)	496, 553, 808
AluI	AGCT	3 cut(s)	496, 553, 808
AlwI	GGATC	1 cut(s)	729
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	6 cut(s)	24, 163, 167, 577, 881, 923
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	16
AsiGI	ACCGGT	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	189, 521
AspS9I	GGNCC	3 cut(s)	25, 142, 924
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	3 cut(s)	188, 217, 416
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	120, 451
BarI	GAAGNNNNNNTAC	2 cut(s)	893, 925
BbsI	GAAGAC	2 cut(s)	256, 908
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	4 cut(s)	201, 599, 733, 803
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	6 cut(s)	209, 340, 396, 434, 871, 892
BciVI	GTATCC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	800
BfmI	CTRYAG	1 cut(s)	382
BfoI	RGCGCY	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	2 cut(s)	39, 104
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	2 cut(s)	40, 105
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	7 cut(s)	209, 340, 396, 434, 800, 871, 892
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	3 cut(s)	25, 142, 924
BmiI	GGNNCC	3 cut(s)	70, 144, 157
BmrFI	CCNGG	7 cut(s)	209, 340, 396, 434, 800, 871, 892
BmsI	GCATC	4 cut(s)	342, 451, 780, 926
BpiI	GAAGAC	2 cut(s)	256, 908
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuMI	CCSGG	1 cut(s)	800
BsaAI	YACGTR	1 cut(s)	909
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	7 cut(s)	21, 28, 76, 208, 338, 456, 465
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	9 cut(s)	125, 139, 152, 165, 208, 281, 433, 439, 534
Bse118I	RCCGGY	3 cut(s)	139, 165, 227
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	580
BseBI	CCWGG	6 cut(s)	209, 340, 396, 434, 871, 892
BseDI	CCNNGG	7 cut(s)	21, 28, 76, 208, 338, 456, 465
BseGI	GGATG	4 cut(s)	333, 466, 771, 795
BseLI	CCNNNNNNNGG	9 cut(s)	125, 139, 152, 165, 208, 281, 433, 439, 534
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	3 cut(s)	138, 148, 162
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	183
Bsh1236I	CGCG	2 cut(s)	14, 519
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	6 cut(s)	26, 165, 169, 579, 883, 925
BshNI	GGYRCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	5 cut(s)	140, 162, 166, 228, 800
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	9 cut(s)	125, 139, 152, 165, 208, 281, 433, 439, 534
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	6 cut(s)	26, 165, 169, 579, 883, 925
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	120, 451
Bsp1407I	TGTACA	2 cut(s)	681, 729
Bsp143I	GATC	3 cut(s)	480, 721, 849
Bsp1720I	GCTNAGC	1 cut(s)	804
BspACI	CCGC	3 cut(s)	39, 101, 487
BspANI	GGCC	6 cut(s)	26, 165, 169, 579, 883, 925
BspCNI	CTCAG	1 cut(s)	727
BspFNI	CGCG	2 cut(s)	14, 519
BspLI	GGNNCC	3 cut(s)	70, 144, 157
BspPI	GGATC	1 cut(s)	729
BspQI	GCTCTTC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	580
BsrFI	RCCGGY	3 cut(s)	139, 165, 227
BsrGI	TGTACA	2 cut(s)	681, 729
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	3 cut(s)	139, 165, 227
BssECI	CCNNGG	7 cut(s)	21, 28, 76, 208, 338, 456, 465
BssMI	GATC	3 cut(s)	480, 721, 849
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	3 cut(s)	21, 76, 456
Bst2UI	CCWGG	6 cut(s)	209, 340, 396, 434, 871, 892
Bst4CI	ACNGT	5 cut(s)	111, 223, 622, 638, 695
Bst6I	CTCTTC	1 cut(s)	563
BstACI	GRCGYC	1 cut(s)	81
BstAUI	TGTACA	2 cut(s)	681, 729
BstBAI	YACGTR	1 cut(s)	909
BstC8I	GCNNGC	4 cut(s)	56, 167, 409, 588
BstDEI	CTNAG	2 cut(s)	735, 804
BstF5I	GGATG	4 cut(s)	333, 466, 771, 795
BstFNI	CGCG	2 cut(s)	14, 519
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	189, 521
BstKTI	GATC	3 cut(s)	483, 724, 852
BstMBI	GATC	3 cut(s)	480, 721, 849
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	6 cut(s)	209, 340, 396, 434, 871, 892
BstNSI	RCATGY	2 cut(s)	411, 682
BstSCI	CCNGG	7 cut(s)	207, 338, 394, 432, 798, 869, 890
BstSFI	CTRYAG	1 cut(s)	382
BstUI	CGCG	2 cut(s)	14, 519
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	2 cut(s)	256, 908
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BstZI	CGGCCG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	6 cut(s)	26, 165, 169, 579, 883, 925
BtsCI	GGATG	4 cut(s)	333, 466, 771, 795
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	4 cut(s)	56, 167, 409, 588
CfoI	GCGC	2 cut(s)	189, 521
Cfr10I	RCCGGY	3 cut(s)	139, 165, 227
Cfr13I	GGNCC	3 cut(s)	25, 142, 924
CseI	GACGC	2 cut(s)	20, 70
CsiI	ACCWGGT	1 cut(s)	432
Csp6I	GTAC	7 cut(s)	61, 430, 682, 691, 730, 825, 910
CspAI	ACCGGT	1 cut(s)	227
CviAII	CATG	3 cut(s)	408, 490, 679
CviQI	GTAC	7 cut(s)	61, 430, 682, 691, 730, 825, 910
DdeI	CTNAG	2 cut(s)	735, 804
DpnI	GATC	3 cut(s)	482, 723, 851
DpnII	GATC	3 cut(s)	480, 721, 849
EaeI	YGGCCR	2 cut(s)	163, 577
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	21, 76, 456
Eco24I	GRGCYC	2 cut(s)	120, 451
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	566, 575
Eco88I	CYCGRG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	6 cut(s)	207, 338, 394, 432, 869, 890
EcoT14I	CCWWGG	3 cut(s)	21, 76, 456
EcoT38I	GRGCYC	2 cut(s)	120, 451
ErhI	CCWWGG	3 cut(s)	21, 76, 456
FaeI	CATG	3 cut(s)	411, 493, 682
FaiI	YATR	7 cut(s)	234, 311, 345, 402, 409, 491, 680
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	407, 489, 678
Fnu4HI	GCNGC	2 cut(s)	39, 104
FokI	GGATG	4 cut(s)	320, 473, 758, 782
FriOI	GRGCYC	2 cut(s)	120, 451
FseI	GGCCGGCC	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	39, 104
GlaI	GCGC	2 cut(s)	188, 520
GluI	GCNGC	2 cut(s)	39, 104
GsaI	CCCAGC	1 cut(s)	187
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	6 cut(s)	26, 165, 169, 579, 883, 925
HapII	CCGG	5 cut(s)	140, 162, 166, 228, 800
HgaI	GACGC	2 cut(s)	20, 70
HhaI	GCGC	2 cut(s)	189, 521
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	411, 493, 682
Hin6I	GCGC	2 cut(s)	187, 519
HinP1I	GCGC	2 cut(s)	187, 519
HindIII	AAGCTT	2 cut(s)	494, 806
HpaII	CCGG	5 cut(s)	140, 162, 166, 228, 800
HphI	GGTGA	3 cut(s)	188, 217, 416
Hpy166II	GTNNAC	2 cut(s)	379, 732
Hpy188I	TCNGA	3 cut(s)	115, 708, 726
Hpy188III	TCNNGA	3 cut(s)	544, 565, 784
Hpy8I	GTNNAC	2 cut(s)	379, 732
Hpy99I	CGWCG	3 cut(s)	11, 14, 86
HpyAV	CCTTC	4 cut(s)	82, 261, 553, 868
HpyCH4III	ACNGT	5 cut(s)	111, 223, 622, 638, 695
HpyCH4IV	ACGT	1 cut(s)	908
HpyCH4V	TGCA	4 cut(s)	407, 411, 771, 813
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	735, 804
HpySE526I	ACGT	1 cut(s)	908
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	411, 493, 682
HspAI	GCGC	2 cut(s)	187, 519
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	480, 721, 849
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	4 cut(s)	342, 451, 780, 926
MabI	ACCWGGT	1 cut(s)	432
MaeII	ACGT	1 cut(s)	908
MaeIII	GTNAC	2 cut(s)	223, 695
MalI	GATC	3 cut(s)	482, 723, 851
MboI	GATC	3 cut(s)	480, 721, 849
MboII	GAAGA	6 cut(s)	261, 559, 568, 580, 622, 913
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	2 cut(s)	120, 451
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	4 cut(s)	16, 291, 833, 841
MluNI	TGGCCA	1 cut(s)	579
Mox20I	TGGCCA	1 cut(s)	579
MroNI	GCCGGC	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	579
MslI	CAYNNNNRTG	2 cut(s)	507, 737
Msp20I	TGGCCA	1 cut(s)	579
MspI	CCGG	5 cut(s)	140, 162, 166, 228, 800
MspR9I	CCNGG	7 cut(s)	209, 340, 396, 434, 800, 871, 892
MvaI	CCWGG	6 cut(s)	209, 340, 396, 434, 871, 892
MvnI	CGCG	2 cut(s)	14, 519
MwoI	GCNNNNNNNGC	1 cut(s)	162
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	800
NdeII	GATC	3 cut(s)	480, 721, 849
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	3 cut(s)	411, 493, 682
NlaIV	GGNNCC	3 cut(s)	70, 144, 157
NmeAIII	GCCGAG	2 cut(s)	132, 490
NmuCI	GTSAC	2 cut(s)	223, 695
NspI	RCATGY	2 cut(s)	411, 682
PaeI	GCATGC	1 cut(s)	411
PciI	ACATGT	1 cut(s)	678
PciSI	GCTCTTC	1 cut(s)	563
PdiI	GCCGGC	1 cut(s)	167
PflMI	CCANNNNNTGG	2 cut(s)	439, 534
PfoI	TCCNGGA	1 cut(s)	869
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	40, 105
Ppu21I	YACGTR	1 cut(s)	909
PscI	ACATGT	1 cut(s)	678
PsiI	TTATAA	1 cut(s)	311
Psp6I	CCWGG	6 cut(s)	207, 338, 394, 432, 869, 890
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	6 cut(s)	207, 338, 394, 432, 869, 890
PspN4I	GGNNCC	3 cut(s)	70, 144, 157
PspPI	GGNCC	3 cut(s)	25, 142, 924
PsuI	RGATCY	1 cut(s)	480
RigI	GGCCGGCC	1 cut(s)	169
RsaI	GTAC	7 cut(s)	62, 431, 683, 692, 731, 826, 911
RsaNI	GTAC	7 cut(s)	61, 430, 682, 691, 730, 825, 910
RseI	CAYNNNNRTG	2 cut(s)	507, 737
SapI	GCTCTTC	1 cut(s)	563
SatI	GCNGC	2 cut(s)	39, 104
Sau3AI	GATC	3 cut(s)	480, 721, 849
Sau96I	GGNCC	3 cut(s)	25, 142, 924
ScaI	AGTACT	1 cut(s)	62
ScrFI	CCNGG	7 cut(s)	209, 340, 396, 434, 800, 871, 892
SduI	GDGCHC	2 cut(s)	120, 451
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	4 cut(s)	342, 451, 780, 926
SfcI	CTRYAG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	507, 737
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	4 cut(s)	16, 291, 833, 841
SsiI	CCGC	3 cut(s)	39, 101, 487
StyD4I	CCNGG	7 cut(s)	207, 338, 394, 432, 798, 869, 890
StyI	CCWWGG	3 cut(s)	21, 76, 456
TaaI	ACNGT	5 cut(s)	111, 223, 622, 638, 695
TaiI	ACGT	1 cut(s)	911
TasI	AATT	4 cut(s)	16, 291, 833, 841
TatI	WGTACW	3 cut(s)	60, 681, 729
TauI	GCSGC	1 cut(s)	41
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	2 cut(s)	223, 695
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	2 cut(s)	223, 695
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	739
Van91I	CCANNNNNTGG	2 cut(s)	439, 534
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	2 cut(s)	411, 682
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.