Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Reverse (-)

3844199 .. 3846738

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G079300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGCGACGATTCTAAGACCAGAGGACTCGCGGGGGACCAGCAGAGTCAGCAGTATTACGGCACCTTCCAAGGCGTTGCCAACTACTACCCCACGGTTCCTCCGCCACCGCCTGAGCCGGTCGTCGGTTTCCCTCAGCCGGTTCCTCCTCCCGGTTCGACTGGCCGCCCACCCTTGCCTCCCCATCACCAGCATCATCATCATCACCATCGTGGATACCAAACGGTCACTGGTTATGCTGTTGTTGAGGGAAGACCTGTGCATGAACGCCGCCTTCCTTGCTGTGGTATGGGCATCGGCTGGTTATTGTTTATAATTGGGTTCTTTCTTGGAGGCATCCCCTGGTATGTTGGAACTTTCATCTTACTTTGTGTGCGGGTGGACTACAGAGAAAAACCTGGATATGTAGCATGCACAATAGCTTCAATTCTTGCTGTGATTGCTGTTACTCTTGGCGCAACAAAGGGAGCTCGCACCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.54

Weight (kDa)

8.98

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	1 cut(s)	32
AciI	CCGC	6 cut(s)	32, 104, 110, 166, 271, 376
AcoI	YGGCCR	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	480
AfiI	CCNNNNNNNGG	4 cut(s)	125, 139, 152, 284
AgsI	TTSAA	1 cut(s)	426
AjnI	CCWGG	3 cut(s)	341, 397, 476
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	422, 470
AluI	AGCT	2 cut(s)	422, 470
Alw21I	GWGCWC	1 cut(s)	472
AoxI	GGCC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	179, 197
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	472
BbvCI	CCTCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	192, 216
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	3 cut(s)	343, 399, 478
BciVI	GTATCC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	166, 271
BlsI	GCNGC	2 cut(s)	167, 272
Bme1390I	CCNGG	4 cut(s)	153, 343, 399, 478
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	4 cut(s)	38, 64, 99, 144
BmrFI	CCNGG	4 cut(s)	153, 343, 399, 478
BmsI	GCATC	3 cut(s)	202, 303, 345
BpiI	GAAGAC	1 cut(s)	259
Bpu10I	CCTNAGC	2 cut(s)	114, 135
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	70, 93, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 139, 152, 284
Bse118I	RCCGGY	2 cut(s)	118, 139
Bse1I	ACTGG	2 cut(s)	166, 235
BseBI	CCWGG	3 cut(s)	343, 399, 478
BseDI	CCNNGG	3 cut(s)	70, 93, 341
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	4 cut(s)	125, 139, 152, 284
BseMII	CTCAG	2 cut(s)	105, 149
BseNI	ACTGG	2 cut(s)	166, 235
BseRI	GAGGAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	3 cut(s)	119, 140, 153
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	4 cut(s)	125, 139, 152, 284
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	472
BspACI	CCGC	6 cut(s)	32, 104, 110, 166, 271, 376
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	106, 148
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	4 cut(s)	38, 64, 99, 144
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	118, 139
BsrI	ACTGG	2 cut(s)	166, 235
BssAI	RCCGGY	2 cut(s)	118, 139
BssECI	CCNNGG	3 cut(s)	70, 93, 341
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	3 cut(s)	343, 399, 478
Bst4CI	ACNGT	2 cut(s)	97, 226
BstC8I	GCNNGC	2 cut(s)	412, 472
BstDEI	CTNAG	3 cut(s)	15, 114, 135
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	458
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 279, 440
BstNI	CCWGG	3 cut(s)	343, 399, 478
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	4 cut(s)	151, 341, 397, 476
BstSFI	CTRYAG	1 cut(s)	385
BstUI	CGCG	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	412, 472
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	2 cut(s)	118, 139
Cfr13I	GGNCC	1 cut(s)	37
CsiI	ACCWGGT	1 cut(s)	476
CviAII	CATG	2 cut(s)	263, 411
CviJI	RGCY	6 cut(s)	118, 139, 165, 300, 422, 470
CviKI_1	RGCY	6 cut(s)	118, 139, 165, 300, 422, 470
DdeI	CTNAG	3 cut(s)	15, 114, 135
DraIII	CACNNNGTG	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	470
EcoRII	CCWGG	3 cut(s)	341, 397, 476
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	2 cut(s)	266, 414
FaiI	YATR	7 cut(s)	237, 264, 290, 314, 348, 405, 412
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	262, 410
FauI	CCCGC	2 cut(s)	25, 369
Fnu4HI	GCNGC	2 cut(s)	166, 271
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	2 cut(s)	166, 271
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	2 cut(s)	166, 271
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	3 cut(s)	119, 140, 153
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	2 cut(s)	266, 414
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HinfI	GANTC	3 cut(s)	11, 27, 46
HpaII	CCGG	3 cut(s)	119, 140, 153
HphI	GGTGA	2 cut(s)	179, 197
Hpy166II	GTNNAC	1 cut(s)	382
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	2 cut(s)	11, 128
HpyAV	CCTTC	2 cut(s)	76, 284
HpyCH4III	ACNGT	2 cut(s)	97, 226
HpyCH4V	TGCA	2 cut(s)	262, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 279, 440
HpyF3I	CTNAG	3 cut(s)	15, 114, 135
Hsp92II	CATG	2 cut(s)	266, 414
HspAI	GCGC	1 cut(s)	456
LmnI	GCTCC	1 cut(s)	467
LweI	GCATC	3 cut(s)	202, 303, 345
MabI	ACCWGGT	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	226, 445
MboII	GAAGA	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	2 cut(s)	315, 426
MlyI	GAGTC	2 cut(s)	21, 55
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	8 cut(s)	17, 111, 144, 156, 159, 189, 241, 326
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	3 cut(s)	119, 140, 153
MspR9I	CCNGG	4 cut(s)	153, 343, 399, 478
MvaI	CCWGG	3 cut(s)	343, 399, 478
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	49, 279, 440
NciI	CCSGG	1 cut(s)	153
NlaIII	CATG	2 cut(s)	266, 414
NlaIV	GGNNCC	4 cut(s)	38, 64, 99, 144
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	414
OliI	CACNNNNGTG	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	167, 272
PleI	GAGTC	2 cut(s)	21, 54
PpsI	GAGTC	2 cut(s)	21, 54
PsiI	TTATAA	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	472
Psp6I	CCWGG	3 cut(s)	341, 397, 476
PspGI	CCWGG	3 cut(s)	341, 397, 476
PspN4I	GGNNCC	4 cut(s)	38, 64, 99, 144
PspPI	GGNCC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	472
SatI	GCNGC	2 cut(s)	166, 271
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	21, 55
ScrFI	CCNGG	4 cut(s)	153, 343, 399, 478
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	6 cut(s)	68, 259, 400, 424, 472, 479
SexAI	ACCWGGT	1 cut(s)	476
SfaNI	GCATC	3 cut(s)	202, 303, 345
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	210
SphI	GCATGC	1 cut(s)	414
Sse9I	AATT	2 cut(s)	315, 426
SsiI	CCGC	6 cut(s)	32, 104, 110, 166, 271, 376
SstI	GAGCTC	1 cut(s)	472
StyD4I	CCNGG	4 cut(s)	151, 341, 397, 476
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	97, 226
TaqI	TCGA	1 cut(s)	158
TasI	AATT	2 cut(s)	315, 426
TauI	GCSGC	2 cut(s)	168, 273
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	279, 349
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.