Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Forward (+)

19640527 .. 19651588

Gene Structure 11062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG209700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCGTGGCTCGCCGAGAGTCAGTAAGGATTTGGGGACGGTTATAAACGAGTCGTCGTCCCCAAGTTTCGATTCTGATGGCGGCGGCTCCAAGGGACATCCGCTGCCGCGGCTGTCGGTGTCGTCGACGCAGGGAGTGGGAAATGATCAGGGGATTGGTTTGGGATCTGCGTCCGGATCGGTTTCCAGCGTCGCCAACTACCCCCCTCCGCAGCCACCGTCCGAGCAGGTAGTCGGTTTCCCTACGCCAGTCCCTCCTCTCGGCTCCTCCGGCCTGCCTCTTCTACCTCCCCAGCGCCACCATCACCACCACCACCAGGGATACCAAACTGTCACCGGTTATGTTGTTGTTGAGGGAAGGCCTGTGAGGGAACGAAGGCTTCCGTGCTGTGGTCTTGGAAGCGGCTGGTTATTGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCGGGTATATTGGAACTTTTATTTTACTTTGTGTGAGGGTGGACTACAGAGAAAAACCTGGATATGTTGCATGCACATTAGCAGGGATACCACTCAATAGAAGGCAGAAGCTGAGCTACAATGGAATGGCCCGTCAAGGACCTATAGAGCAGGTGATATTTTGCTTGACAAGAGTATCAGTGTATCAGCCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

213

Amino Acids

22.71

Weight (kDa)

9.4

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	44, 419
AarI	CACCTGC	1 cut(s)	586
Acc36I	ACCTGC	2 cut(s)	217, 586
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	173
AciI	CCGC	7 cut(s)	81, 84, 101, 107, 109, 209, 402
AclWI	GGATC	2 cut(s)	172, 184
AfiI	CCNNNNNNNGG	3 cut(s)	260, 316, 389
AgeI	ACCGGT	1 cut(s)	335
AjnI	CCWGG	2 cut(s)	315, 502
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	2 cut(s)	556, 561
AluI	AGCT	2 cut(s)	556, 561
AlwI	GGATC	2 cut(s)	172, 184
AlwNI	CAGNNNCTG	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	446
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	3 cut(s)	271, 359, 573
ApeKI	GCWGC	2 cut(s)	103, 211
AsiGI	ACCGGT	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	574, 584
AsuC2I	CCSGG	2 cut(s)	447, 448
AsuHPI	GGTGA	3 cut(s)	296, 325, 610
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	584
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BarI	GAAGNNNNNNTAC	2 cut(s)	545, 577
BbvI	GCAGC	2 cut(s)	90, 223
BccI	CCATC	2 cut(s)	71, 309
BciT130I	CCWGG	2 cut(s)	317, 504
BciVI	GTATCC	2 cut(s)	314, 525
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	2 cut(s)	447, 448
BfmI	CTRYAG	2 cut(s)	490, 588
BfoI	RGCGCY	1 cut(s)	298
BfuAI	ACCTGC	2 cut(s)	217, 586
BfuI	GTATCC	2 cut(s)	314, 525
BisI	GCNGC	7 cut(s)	82, 85, 104, 107, 110, 212, 403
BlpI	GCTNAGC	1 cut(s)	557
BlsI	GCNGC	7 cut(s)	83, 86, 105, 108, 111, 213, 404
Bme1390I	CCNGG	4 cut(s)	317, 447, 448, 504
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	574, 584
BmiI	GGNNCC	2 cut(s)	88, 265
BmrFI	CCNGG	4 cut(s)	317, 447, 448, 504
BmsI	GCATC	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	447, 448
BsaJI	CCNNGG	5 cut(s)	90, 107, 316, 445, 446
BsaWI	WCCGGW	2 cut(s)	173, 335
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 316, 389
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	317, 504
BseDI	CCNNGG	5 cut(s)	90, 107, 316, 445, 446
BseGI	GGATG	2 cut(s)	97, 441
BseLI	CCNNNNNNNGG	3 cut(s)	260, 316, 389
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	246, 256
BseXI	GCAGC	2 cut(s)	90, 223
BseYI	CCCAGC	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	273, 361, 575
BshTI	ACCGGT	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	4 cut(s)	174, 270, 336, 447
BslFI	GGGAC	4 cut(s)	43, 49, 108, 236
BslI	CCNNNNNNNGG	3 cut(s)	260, 316, 389
BsmFI	GGGAC	4 cut(s)	43, 49, 108, 236
BsnI	GGCC	3 cut(s)	273, 361, 575
BsoBI	CYCGRG	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	145, 164, 176
Bsp1720I	GCTNAGC	1 cut(s)	557
BspACI	CCGC	7 cut(s)	81, 84, 101, 107, 109, 209, 402
BspANI	GGCC	3 cut(s)	273, 361, 575
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	88, 265
BspMI	ACCTGC	2 cut(s)	217, 586
BspPI	GGATC	2 cut(s)	172, 184
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	5 cut(s)	90, 107, 316, 445, 446
BssMI	GATC	3 cut(s)	145, 164, 176
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	317, 504
Bst4CI	ACNGT	3 cut(s)	40, 219, 331
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	11, 275, 517
BstDEI	CTNAG	1 cut(s)	557
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	97, 441
BstFNI	CGCG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	3 cut(s)	148, 167, 179
BstMBI	GATC	3 cut(s)	145, 164, 176
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 109, 270
BstNI	CCWGG	2 cut(s)	317, 504
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	4 cut(s)	315, 445, 446, 502
BstSFI	CTRYAG	2 cut(s)	490, 588
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	90, 223
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuI	GTATCC	2 cut(s)	314, 525
BsuRI	GGCC	3 cut(s)	273, 361, 575
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	97, 441
BtsIMutI	CAGTG	1 cut(s)	630
BveI	ACCTGC	2 cut(s)	217, 586
Cac8I	GCNNGC	3 cut(s)	11, 275, 517
CaiI	CAGNNNCTG	1 cut(s)	556
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	574, 584
Cfr42I	CCGCGG	1 cut(s)	110
Cfr9I	CCCGGG	1 cut(s)	446
CseI	GACGC	3 cut(s)	136, 159, 178
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	2 cut(s)	516, 639
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	3 cut(s)	147, 166, 178
DpnII	GATC	3 cut(s)	145, 164, 176
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	315, 502
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	519, 642
FaiI	YATR	8 cut(s)	44, 342, 419, 453, 510, 517, 590, 640
FaqI	GGGAC	4 cut(s)	43, 49, 108, 236
FatI	CATG	2 cut(s)	515, 638
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	7 cut(s)	82, 85, 104, 107, 110, 212, 403
FokI	GGATG	2 cut(s)	84, 428
Fsp4HI	GCNGC	7 cut(s)	82, 85, 104, 107, 110, 212, 403
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	7 cut(s)	82, 85, 104, 107, 110, 212, 403
GsaI	CCCAGC	1 cut(s)	295
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	3 cut(s)	273, 361, 575
HapII	CCGG	4 cut(s)	174, 270, 336, 447
HgaI	GACGC	3 cut(s)	136, 159, 178
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	519, 642
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	18, 50, 71
HpaII	CCGG	4 cut(s)	174, 270, 336, 447
HphI	GGTGA	3 cut(s)	296, 325, 610
Hpy166II	GTNNAC	2 cut(s)	126, 487
Hpy188I	TCNGA	2 cut(s)	76, 223
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	126, 487
Hpy99I	CGWCG	4 cut(s)	58, 127, 130, 194
HpyAV	CCTTC	3 cut(s)	351, 369, 540
HpyCH4III	ACNGT	3 cut(s)	40, 219, 331
HpyCH4V	TGCA	2 cut(s)	515, 519
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 109, 270
HpyF3I	CTNAG	1 cut(s)	557
Hsp92II	CATG	2 cut(s)	519, 642
HspAI	GCGC	1 cut(s)	295
Kpn2I	TCCGGA	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	145
KspI	CCGCGG	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	145, 164, 176
LmnI	GCTCC	2 cut(s)	92, 269
Lsp1109I	GCAGC	2 cut(s)	90, 223
LweI	GCATC	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	147, 166, 178
MboI	GATC	3 cut(s)	145, 164, 176
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	1 cut(s)	164
MlyI	GAGTC	2 cut(s)	27, 59
MnlI	CCTC	9 cut(s)	216, 264, 267, 277, 288, 297, 346, 360, 474
MroI	TCCGGA	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	103, 109
MspI	CCGG	4 cut(s)	174, 270, 336, 447
MspR9I	CCNGG	4 cut(s)	317, 447, 448, 504
MvaI	CCWGG	2 cut(s)	317, 504
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	3 cut(s)	10, 109, 270
NciI	CCSGG	2 cut(s)	447, 448
NdeII	GATC	3 cut(s)	145, 164, 176
NlaIII	CATG	2 cut(s)	519, 642
NlaIV	GGNNCC	2 cut(s)	88, 265
NmeAIII	GCCGAG	2 cut(s)	39, 240
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	519
PaqCI	CACCTGC	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	71
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	7 cut(s)	83, 86, 105, 108, 111, 213, 404
PleI	GAGTC	2 cut(s)	26, 58
PpsI	GAGTC	2 cut(s)	26, 58
PpuMI	RGGWCCY	1 cut(s)	584
PsiI	TTATAA	2 cut(s)	44, 419
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	315, 502
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	2 cut(s)	315, 502
PspN4I	GGNNCC	2 cut(s)	88, 265
PspPI	GGNCC	2 cut(s)	574, 584
PspPPI	RGGWCCY	1 cut(s)	584
PstNI	CAGNNNCTG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	164
SacII	CCGCGG	1 cut(s)	110
SalI	GTCGAC	1 cut(s)	124
SatI	GCNGC	7 cut(s)	82, 85, 104, 107, 110, 212, 403
Sau3AI	GATC	3 cut(s)	145, 164, 176
Sau96I	GGNCC	2 cut(s)	574, 584
SchI	GAGTC	2 cut(s)	27, 59
ScrFI	CCNGG	4 cut(s)	317, 447, 448, 504
SetI	ASST	7 cut(s)	231, 289, 505, 558, 563, 589, 600
SfaNI	GCATC	1 cut(s)	450
SfcI	CTRYAG	2 cut(s)	490, 588
Sfr303I	CCGCGG	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	110
SgrDI	CGTCGACG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	584
SmaI	CCCGGG	1 cut(s)	448
SphI	GCATGC	1 cut(s)	519
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	7 cut(s)	81, 84, 101, 107, 109, 209, 402
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	4 cut(s)	315, 445, 446, 502
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	40, 219, 331
TaqI	TCGA	2 cut(s)	69, 125
TauI	GCSGC	5 cut(s)	84, 87, 109, 112, 405
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	103, 211
Tsp45I	GTSAC	1 cut(s)	331
TspGWI	ACGGA	1 cut(s)	372
TspMI	CCCGGG	1 cut(s)	446
TspRI	CASTG	1 cut(s)	630
VpaK11BI	GGWCC	1 cut(s)	584
XceI	RCATGY	1 cut(s)	519
XmaI	CCCGGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.