Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Forward (+)

35758433 .. 35761474

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1263400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGCGACGACTCCAAGACCAGAGGCCTTTCCGGCGACCAGCAGGGGCAGAGCCAGAGCCAGCAGCAGTACTACGGCACCTTCCAAGGCGTCGCCAACTACTACCCTCCGCCTCCGCAGCCACCGCCTGAGCCGGTTGTCGGGTTTCCTCAGCCGGTCCCACCTCCCCGTTCTTCCGGCCGTCCTCCCTTGCCTCCCTTGCCTCCCTTGCCTCCCCATCATCACCACCACCACCACCACCATCACCAACATGGATACCAAACGGTTACTGGTTATGCTGTTGTGGAAGGAAGACCCGTAAGGGAACGACGCCTTCCTTGCTGTGGCATCGGCATAGGCTGGTTATTGTTTATAGCAGGTTTCTTTCTTGGAGGCATCCCCTGGTATGTTGGAACTTTCATCTTACTTTGTGTGCAGGTGGACTACAGAGAAAAACCTGGATATGTAGCATGCACAATAGCTGCGATTCTTGCTGTGATTGCTATTACTCTGGGCGTAACGAATGGAGCTGAAAACCTGATGAGCCTTCACTCGAAGGAGCTGTGGGGGGGATGGCTAGTGCCGATAATCCATATGTTGGTTTGTCTTGCACATGTACTTGACAGGAGAGTAGCGGGTGTTTGTTGTATCTATTCAATATGGTGTTCTATTTTCTCAGAATTTGCAAGCATTCATTACTCAAAACTACATACATACAATTATCTTGTGATTATATCCAGATGGCCAATGCCGTACACCTTTCTAGATTTCTTTCTCAATGAAAATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.69

Weight (kDa)

7.7

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	2 cut(s)	347, 406
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	577
AciI	CCGC	4 cut(s)	110, 116, 125, 614
AcoI	YGGCCR	2 cut(s)	178, 722
AcsI	RAATTY	1 cut(s)	659
AcyI	GRCGYC	2 cut(s)	90, 310
AfaI	GTAC	3 cut(s)	71, 597, 734
AfiI	CCNNNNNNNGG	3 cut(s)	140, 323, 577
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	1 cut(s)	636
AjnI	CCWGG	2 cut(s)	380, 436
AluBI	AGCT	3 cut(s)	461, 509, 541
AluI	AGCT	3 cut(s)	461, 509, 541
AoxI	GGCC	3 cut(s)	25, 178, 722
ApeKI	GCWGC	3 cut(s)	64, 118, 461
ApoI	RAATTY	1 cut(s)	659
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	215, 236
AvaII	GGWCC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	298
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	76, 130, 448
BccI	CCATC	4 cut(s)	225, 249, 546, 714
BceAI	ACGGC	3 cut(s)	91, 165, 715
BciT130I	CCWGG	2 cut(s)	382, 438
BciVI	GTATCC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	557, 743
BfmI	CTRYAG	1 cut(s)	424
BfuAI	ACCTGC	2 cut(s)	347, 406
BfuI	GTATCC	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	3 cut(s)	65, 119, 462
BlsI	GCNGC	3 cut(s)	66, 120, 463
BmcAI	AGTACT	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	382, 438
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	79, 159
BmrFI	CCNGG	2 cut(s)	382, 438
BmsI	GCATC	2 cut(s)	336, 384
BpiI	GAAGAC	1 cut(s)	298
Bpu10I	CCTNAGC	2 cut(s)	129, 150
BsaHI	GRCGYC	2 cut(s)	90, 310
BsaJI	CCNNGG	2 cut(s)	85, 380
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 323, 577
Bse118I	RCCGGY	2 cut(s)	133, 154
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	382, 438
BseDI	CCNNGG	2 cut(s)	85, 380
BseGI	GGATG	2 cut(s)	375, 557
BseLI	CCNNNNNNNGG	3 cut(s)	140, 323, 577
BseMII	CTCAG	3 cut(s)	120, 164, 669
BseNI	ACTGG	1 cut(s)	274
BseX3I	CGGCCG	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	76, 130, 448
BsgI	GTGCAG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	3 cut(s)	27, 180, 724
BshNI	GGYRCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	4 cut(s)	33, 134, 155, 177
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	140, 323, 577
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	3 cut(s)	27, 180, 724
BspACI	CCGC	4 cut(s)	110, 116, 125, 614
BspANI	GGCC	3 cut(s)	27, 180, 724
BspCNI	CTCAG	3 cut(s)	121, 163, 668
BspLI	GGNNCC	2 cut(s)	79, 159
BspMI	ACCTGC	2 cut(s)	347, 406
BspT107I	GGYRCC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	133, 154
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	2 cut(s)	133, 154
BssECI	CCNNGG	2 cut(s)	85, 380
BssNI	GRCGYC	2 cut(s)	90, 310
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	382, 438
Bst4CI	ACNGT	1 cut(s)	265
BstACI	GRCGYC	2 cut(s)	90, 310
BstC8I	GCNNGC	3 cut(s)	62, 451, 667
BstDEI	CTNAG	3 cut(s)	129, 150, 655
BstF5I	GGATG	2 cut(s)	375, 557
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 118, 124, 199, 208, 318, 470, 479
BstNI	CCWGG	2 cut(s)	382, 438
BstNSI	RCATGY	2 cut(s)	453, 596
BstSCI	CCNGG	2 cut(s)	380, 436
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	3 cut(s)	76, 130, 448
BstV2I	GAAGAC	1 cut(s)	298
BstZI	CGGCCG	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	27, 180, 724
BtsCI	GGATG	2 cut(s)	375, 557
BveI	ACCTGC	2 cut(s)	347, 406
Cac8I	GCNNGC	3 cut(s)	62, 451, 667
Cfr10I	RCCGGY	2 cut(s)	133, 154
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	2 cut(s)	79, 318
Csp6I	GTAC	3 cut(s)	70, 596, 733
CviAII	CATG	3 cut(s)	251, 450, 593
CviQI	GTAC	3 cut(s)	70, 596, 733
DdeI	CTNAG	3 cut(s)	129, 150, 655
EaeI	YGGCCR	2 cut(s)	178, 722
EagI	CGGCCG	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	157
Eco52I	CGGCCG	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	380, 436
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	3 cut(s)	254, 453, 596
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	3 cut(s)	250, 449, 592
FauI	CCCGC	1 cut(s)	607
FauNDI	CATATG	1 cut(s)	573
Fnu4HI	GCNGC	3 cut(s)	65, 119, 462
FokI	GGATG	2 cut(s)	362, 564
Fsp4HI	GCNGC	3 cut(s)	65, 119, 462
FspBI	CTAG	2 cut(s)	557, 743
GluI	GCNGC	3 cut(s)	65, 119, 462
HaeIII	GGCC	3 cut(s)	27, 180, 724
HapII	CCGG	4 cut(s)	33, 134, 155, 177
HgaI	GACGC	2 cut(s)	79, 318
Hin1I	GRCGYC	2 cut(s)	90, 310
Hin1II	CATG	3 cut(s)	254, 453, 596
HinfI	GANTC	2 cut(s)	11, 466
HpaII	CCGG	4 cut(s)	33, 134, 155, 177
HphI	GGTGA	2 cut(s)	215, 236
Hpy166II	GTNNAC	2 cut(s)	421, 735
Hpy188I	TCNGA	1 cut(s)	658
Hpy188III	TCNNGA	2 cut(s)	717, 743
Hpy8I	GTNNAC	2 cut(s)	421, 735
Hpy99I	CGWCG	3 cut(s)	11, 95, 312
HpyAV	CCTTC	5 cut(s)	91, 281, 323, 529, 536
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	415, 453, 590, 665
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 118, 124, 199, 208, 318, 470, 479
HpyF3I	CTNAG	3 cut(s)	129, 150, 655
Hsp92I	GRCGYC	2 cut(s)	90, 310
Hsp92II	CATG	3 cut(s)	254, 453, 596
LmnI	GCTCC	2 cut(s)	506, 538
Lsp1109I	GCAGC	3 cut(s)	76, 130, 448
LweI	GCATC	2 cut(s)	336, 384
MaeI	CTAG	2 cut(s)	557, 743
MaeIII	GTNAC	2 cut(s)	265, 496
MboII	GAAGA	2 cut(s)	165, 303
MlsI	TGGCCA	1 cut(s)	724
MluCI	AATT	2 cut(s)	659, 697
MluNI	TGGCCA	1 cut(s)	724
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	370
Mox20I	TGGCCA	1 cut(s)	724
MscI	TGGCCA	1 cut(s)	724
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	724
MspI	CCGG	4 cut(s)	33, 134, 155, 177
MspR9I	CCNGG	2 cut(s)	382, 438
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	2 cut(s)	382, 438
MwoI	GCNNNNNNNGC	8 cut(s)	33, 118, 124, 199, 208, 318, 470, 479
NdeI	CATATG	1 cut(s)	573
NlaIII	CATG	3 cut(s)	254, 453, 596
NlaIV	GGNNCC	2 cut(s)	79, 159
NspI	RCATGY	2 cut(s)	453, 596
PaeI	GCATGC	1 cut(s)	453
PaqCI	CACCTGC	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	27
PciI	ACATGT	1 cut(s)	592
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	66, 120, 463
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PscI	ACATGT	1 cut(s)	592
Psp6I	CCWGG	2 cut(s)	380, 436
PspGI	CCWGG	2 cut(s)	380, 436
PspN4I	GGNNCC	2 cut(s)	79, 159
PspPI	GGNCC	1 cut(s)	157
RsaI	GTAC	3 cut(s)	71, 597, 734
RsaNI	GTAC	3 cut(s)	70, 596, 733
RseI	CAYNNNNRTG	1 cut(s)	249
SatI	GCNGC	3 cut(s)	65, 119, 462
Sau96I	GGNCC	1 cut(s)	157
ScaI	AGTACT	1 cut(s)	71
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	2 cut(s)	382, 438
SfaNI	GCATC	2 cut(s)	336, 384
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	249
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	2 cut(s)	659, 697
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	4 cut(s)	110, 116, 125, 614
SspMI	CTAG	2 cut(s)	557, 743
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	380, 436
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	533
TasI	AATT	2 cut(s)	659, 697
TatI	WGTACW	2 cut(s)	69, 595
TfiI	GAWTC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	64, 118, 461
TspDTI	ATGAA	2 cut(s)	388, 662
TspGWI	ACGGA	1 cut(s)	756
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	659
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	2 cut(s)	453, 596
XcmI	CCANNNNNNNNNTGG	2 cut(s)	248, 266
XspI	CTAG	2 cut(s)	557, 743
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.