Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Forward (+)

3367781 .. 3370039

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGCGACGACGCGGACTCCAAGACCCGAGGACTCGCCGCCGACCACCAGAGCCAGCCTTACTACGGCACCTTCCAAGGCGTCGCCAACTACCCGCCTCCGCAGCCACTGTCCGAGCCGGTCGTCGGTTTCCCGTCGCCGGTACCCCCTCCCGGCGTCTCCGGCCGGCCTCCGCTACCTCCGCGGAGCCACCACCACCACCACCACCCCCCCCAGCATCACGGATACCAAACCGTCACCGGTTATGCTGTTGTTGAGGGAAGACCTGTGAGGGAACGAAGGCTACCGTGCTGCTGTGGTCTTGGAAGCGGCTGGGTATTGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCTGGTATATTGGAGCTTTTATTTTGCTTTGTGTGAGGGTGGACTACAGAGAAAAACCTGGATATGTCGCATGCACGATAGCATCAATTCTTGCTTTGCTAGCTATTACTCTTGGCGTTACAAAAGGAACTCACACCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

165

Amino Acids

17.86

Weight (kDa)

8.66

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
Acc65I	GGTACC	1 cut(s)	142
AccB1I	GGYRCC	2 cut(s)	68, 142
AccII	CGCG	2 cut(s)	14, 184
AciI	CCGC	8 cut(s)	14, 39, 95, 101, 173, 182, 184, 309
AcoI	YGGCCR	1 cut(s)	163
AcyI	GRCGYC	2 cut(s)	81, 156
AdeI	CACNNNGTG	1 cut(s)	492
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	4 cut(s)	65, 125, 139, 152
AgeI	ACCGGT	1 cut(s)	239
AjnI	CCWGG	3 cut(s)	353, 409, 488
AluBI	AGCT	2 cut(s)	368, 455
AluI	AGCT	2 cut(s)	368, 455
Alw26I	GTCTC	1 cut(s)	163
AlwNI	CAGNNNCTG	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	2 cut(s)	163, 167
ApeKI	GCWGC	2 cut(s)	103, 291
AsiGI	ACCGGT	1 cut(s)	239
Asp718I	GGTACC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	229
AsuNHI	GCTAGC	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	27
BanI	GGYRCC	2 cut(s)	68, 142
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	115, 278
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	3 cut(s)	355, 411, 490
BciVI	GTATCC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	39, 104, 292, 310
BlsI	GCNGC	4 cut(s)	40, 105, 293, 311
Bme1390I	CCNGG	4 cut(s)	153, 355, 411, 490
BmeT110I	CYCGRG	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	70, 144, 188
BmrFI	CCNGG	4 cut(s)	153, 355, 411, 490
BmsI	GCATC	3 cut(s)	226, 357, 443
BmtI	GCTAGC	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	81, 156
BsaJI	CCNNGG	4 cut(s)	28, 76, 182, 353
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 125, 139, 152
Bse118I	RCCGGY	4 cut(s)	118, 139, 165, 239
BseBI	CCWGG	3 cut(s)	355, 411, 490
BseDI	CCNNGG	4 cut(s)	28, 76, 182, 353
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	4 cut(s)	65, 125, 139, 152
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	115, 278
BseYI	CCCAGC	2 cut(s)	213, 312
Bsh1236I	CGCG	2 cut(s)	14, 184
Bsh1285I	CGRYCG	2 cut(s)	123, 166
BshFI	GGCC	2 cut(s)	165, 169
BshNI	GGYRCC	2 cut(s)	68, 142
BshTI	ACCGGT	1 cut(s)	239
BsiEI	CGRYCG	2 cut(s)	123, 166
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	6 cut(s)	119, 140, 153, 162, 166, 240
BslI	CCNNNNNNNGG	4 cut(s)	65, 125, 139, 152
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	165, 169
BsoBI	CYCGRG	1 cut(s)	27
BspACI	CCGC	8 cut(s)	14, 39, 95, 101, 173, 182, 184, 309
BspANI	GGCC	2 cut(s)	165, 169
BspFNI	CGCG	2 cut(s)	14, 184
BspLI	GGNNCC	3 cut(s)	70, 144, 188
BspOI	GCTAGC	1 cut(s)	455
BspT107I	GGYRCC	2 cut(s)	68, 142
BsrFI	RCCGGY	4 cut(s)	118, 139, 165, 239
BssAI	RCCGGY	4 cut(s)	118, 139, 165, 239
BssECI	CCNNGG	4 cut(s)	28, 76, 182, 353
BssNI	GRCGYC	2 cut(s)	81, 156
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	3 cut(s)	355, 411, 490
Bst4CI	ACNGT	3 cut(s)	111, 235, 288
BstACI	GRCGYC	2 cut(s)	81, 156
BstC8I	GCNNGC	4 cut(s)	56, 167, 424, 453
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	2 cut(s)	14, 184
BstMAI	GTCTC	1 cut(s)	163
BstMCI	CGRYCG	2 cut(s)	123, 166
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 162, 181, 452
BstNI	CCWGG	3 cut(s)	355, 411, 490
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	4 cut(s)	151, 353, 409, 488
BstSFI	CTRYAG	1 cut(s)	397
BstUI	CGCG	2 cut(s)	14, 184
BstV1I	GCAGC	2 cut(s)	115, 278
BstV2I	GAAGAC	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	165, 169
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	4 cut(s)	56, 167, 424, 453
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr10I	RCCGGY	4 cut(s)	118, 139, 165, 239
Cfr42I	CCGCGG	1 cut(s)	185
CseI	GACGC	3 cut(s)	20, 70, 145
CsiI	ACCWGGT	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	143
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	1 cut(s)	423
CviQI	GTAC	1 cut(s)	143
DraIII	CACNNNGTG	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	27
EcoRII	CCWGG	3 cut(s)	353, 409, 488
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	1 cut(s)	426
FaiI	YATR	5 cut(s)	246, 326, 360, 417, 424
FatI	CATG	1 cut(s)	422
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	39, 104, 292, 310
FokI	GGATG	1 cut(s)	335
FseI	GGCCGGCC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	39, 104, 292, 310
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	4 cut(s)	39, 104, 292, 310
GsaI	CCCAGC	2 cut(s)	217, 316
HaeIII	GGCC	2 cut(s)	165, 169
HapII	CCGG	6 cut(s)	119, 140, 153, 162, 166, 240
HgaI	GACGC	3 cut(s)	20, 70, 145
Hin1I	GRCGYC	2 cut(s)	81, 156
Hin1II	CATG	1 cut(s)	426
HinfI	GANTC	2 cut(s)	17, 33
HpaII	CCGG	6 cut(s)	119, 140, 153, 162, 166, 240
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	5 cut(s)	11, 14, 86, 128, 139
HpyAV	CCTTC	2 cut(s)	82, 273
HpyCH4III	ACNGT	3 cut(s)	111, 235, 288
HpyCH4V	TGCA	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 162, 181, 452
Hsp92I	GRCGYC	2 cut(s)	81, 156
Hsp92II	CATG	1 cut(s)	426
KpnI	GGTACC	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
KspI	CCGCGG	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	186, 365
Lsp1109I	GCAGC	2 cut(s)	115, 278
LweI	GCATC	3 cut(s)	226, 357, 443
MabI	ACCWGGT	1 cut(s)	488
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	235, 469
MboII	GAAGA	1 cut(s)	273
MluCI	AATT	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	11, 27
MnlI	CCTC	8 cut(s)	23, 108, 159, 180, 189, 250, 264, 381
MroNI	GCCGGC	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	6 cut(s)	119, 140, 153, 162, 166, 240
MspR9I	CCNGG	4 cut(s)	153, 355, 411, 490
MvaI	CCWGG	3 cut(s)	355, 411, 490
MvnI	CGCG	2 cut(s)	14, 184
MwoI	GCNNNNNNNGC	4 cut(s)	103, 162, 181, 452
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	153
NgoMIV	GCCGGC	1 cut(s)	165
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	3 cut(s)	70, 144, 188
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	426
PaeI	GCATGC	1 cut(s)	426
PdiI	GCCGGC	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	40, 105, 293, 311
PleI	GAGTC	2 cut(s)	11, 27
PpsI	GAGTC	2 cut(s)	11, 27
PsiI	TTATAA	1 cut(s)	326
Psp6I	CCWGG	3 cut(s)	353, 409, 488
PspFI	CCCAGC	2 cut(s)	213, 312
PspGI	CCWGG	3 cut(s)	353, 409, 488
PspN4I	GGNNCC	3 cut(s)	70, 144, 188
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
PstNI	CAGNNNCTG	1 cut(s)	109
RigI	GGCCGGCC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	185
SatI	GCNGC	4 cut(s)	39, 104, 292, 310
SchI	GAGTC	2 cut(s)	11, 27
ScrFI	CCNGG	4 cut(s)	153, 355, 411, 490
SetI	ASST	7 cut(s)	74, 181, 268, 370, 412, 457, 491
SexAI	ACCWGGT	1 cut(s)	488
SfaNI	GCATC	3 cut(s)	226, 357, 443
SfcI	CTRYAG	1 cut(s)	397
Sfr303I	CCGCGG	1 cut(s)	185
SgrBI	CCGCGG	1 cut(s)	185
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	1 cut(s)	438
SsiI	CCGC	8 cut(s)	14, 39, 95, 101, 173, 182, 184, 309
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	4 cut(s)	151, 353, 409, 488
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	111, 235, 288
TasI	AATT	1 cut(s)	438
TauI	GCSGC	2 cut(s)	41, 312
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	103, 291
Tsp45I	GTSAC	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	114
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.