Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Reverse (-)

9435778 .. 9440462

Gene Structure 4685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGCGACGACGCGAATTCCAAGGCCCGAGGACTTGCCGCCGACCACCAGAGCCAGCAGTACTACGGCACCTTCCAAGGCGTCGCCAACTACCCCCCTCCGCAGCCACCGTCCGAGCCGGTAGTCGGTTTCCCTACGCCGGTCCCTCCTCTCGGCTCCTCCGGCCGGCCTCCTCTACCTCCCCAGCGCCACCATCACCACCACCACCACCACCACCAGGGATACCAAACCGTCACCGGCTATGCTGTTGTTGAGGGAAGGCCGGTGAGGGAACGAAGGCTTCCGTGCTGTGGTCTTGGAAACGGCTGGTTATTGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCTGGTATATTGGAACTTTTATTTTCCTTTGTGTGAGGGTGGACTACAGAGAAAAACCTGGATATGTTGCATGCACATTAGCTTTTCACCAGTACCAGGTGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCCAAGATCTACCGCATGAAGCTGTGGCACACCAATGAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAAATGCTTGCCATCAATGAGATTTTTGAGAAGAAACCTACTGTTGTTGAGAACTATGGTATTTGGTTGAGGTATCAAAGCAGGACAGGGTATCACAACATGTACAAGGAGTACCGTGACACCACTCTGAATGGGGCTGTGGATCAGATGTACACTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACTGCCACTATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGATTTCCAGGAAGGTCAGGCCACCAACCAGGAAGTTGAAGACCACGTACAAGGCATCAAGGCCCAACTTGTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

316

Amino Acids

36.53

Weight (kDa)

10.01

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	145 - 266	4.7e-23	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	2 cut(s)	448, 543
AccII	CGCG	2 cut(s)	14, 528
AciI	CCGC	3 cut(s)	39, 101, 496
AclWI	GGATC	1 cut(s)	738
AcoI	YGGCCR	2 cut(s)	163, 586
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	2 cut(s)	575, 584
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	7 cut(s)	62, 440, 692, 701, 740, 835, 920
AfiI	CCNNNNNNNGG	9 cut(s)	125, 139, 152, 165, 217, 290, 442, 448, 543
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	1 cut(s)	910
AjnI	CCWGG	6 cut(s)	216, 347, 403, 441, 878, 899
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	5 cut(s)	428, 505, 562, 812, 817
AluI	AGCT	5 cut(s)	428, 505, 562, 812, 817
AlwI	GGATC	1 cut(s)	738
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	7 cut(s)	24, 163, 167, 260, 586, 890, 932
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	189, 530
AspS9I	GGNCC	3 cut(s)	25, 142, 933
AsuHPI	GGTGA	5 cut(s)	188, 226, 277, 425, 583
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	460
BarI	GAAGNNNNNNTAC	2 cut(s)	902, 934
BbsI	GAAGAC	1 cut(s)	917
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	3 cut(s)	201, 608, 742
BceAI	ACGGC	2 cut(s)	82, 319
BciT130I	CCWGG	6 cut(s)	218, 349, 405, 443, 880, 901
BciVI	GTATCC	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	391
BfoI	RGCGCY	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	2 cut(s)	39, 104
BlpI	GCTNAGC	1 cut(s)	813
BlsI	GCNGC	2 cut(s)	40, 105
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	6 cut(s)	218, 349, 405, 443, 880, 901
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	3 cut(s)	25, 142, 933
BmiI	GGNNCC	3 cut(s)	70, 144, 157
BmrFI	CCNGG	6 cut(s)	218, 349, 405, 443, 880, 901
BmsI	GCATC	4 cut(s)	351, 460, 789, 935
BpiI	GAAGAC	1 cut(s)	917
Bpu1102I	GCTNAGC	1 cut(s)	813
BsaAI	YACGTR	1 cut(s)	918
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	7 cut(s)	21, 28, 76, 217, 347, 465, 474
Bsc4I	CCNNNNNNNGG	9 cut(s)	125, 139, 152, 165, 217, 290, 442, 448, 543
Bse118I	RCCGGY	5 cut(s)	118, 139, 165, 236, 262
Bse1I	ACTGG	1 cut(s)	436
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	6 cut(s)	218, 349, 405, 443, 880, 901
BseDI	CCNNGG	7 cut(s)	21, 28, 76, 217, 347, 465, 474
BseGI	GGATG	3 cut(s)	342, 475, 780
BseLI	CCNNNNNNNGG	9 cut(s)	125, 139, 152, 165, 217, 290, 442, 448, 543
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	735
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	3 cut(s)	138, 148, 162
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	183, 808
Bsh1236I	CGCG	2 cut(s)	14, 528
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	7 cut(s)	26, 165, 169, 262, 588, 892, 934
BshNI	GGYRCC	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	6 cut(s)	119, 140, 162, 166, 237, 263
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	9 cut(s)	125, 139, 152, 165, 217, 290, 442, 448, 543
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	7 cut(s)	26, 165, 169, 262, 588, 892, 934
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp1407I	TGTACA	2 cut(s)	690, 738
Bsp143I	GATC	3 cut(s)	489, 730, 858
Bsp1720I	GCTNAGC	1 cut(s)	813
BspACI	CCGC	3 cut(s)	39, 101, 496
BspANI	GGCC	7 cut(s)	26, 165, 169, 262, 588, 892, 934
BspCNI	CTCAG	1 cut(s)	736
BspFNI	CGCG	2 cut(s)	14, 528
BspLI	GGNNCC	3 cut(s)	70, 144, 157
BspPI	GGATC	1 cut(s)	738
BspQI	GCTCTTC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	589
BsrFI	RCCGGY	5 cut(s)	118, 139, 165, 236, 262
BsrGI	TGTACA	2 cut(s)	690, 738
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	5 cut(s)	118, 139, 165, 236, 262
BssECI	CCNNGG	7 cut(s)	21, 28, 76, 217, 347, 465, 474
BssMI	GATC	3 cut(s)	489, 730, 858
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	3 cut(s)	21, 76, 465
Bst2UI	CCWGG	6 cut(s)	218, 349, 405, 443, 880, 901
Bst4CI	ACNGT	4 cut(s)	111, 232, 631, 704
Bst6I	CTCTTC	1 cut(s)	572
BstACI	GRCGYC	1 cut(s)	81
BstAUI	TGTACA	2 cut(s)	690, 738
BstBAI	YACGTR	1 cut(s)	918
BstC8I	GCNNGC	4 cut(s)	56, 167, 418, 597
BstDEI	CTNAG	2 cut(s)	744, 813
BstF5I	GGATG	3 cut(s)	342, 475, 780
BstFNI	CGCG	2 cut(s)	14, 528
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	189, 530
BstKTI	GATC	3 cut(s)	492, 733, 861
BstMBI	GATC	3 cut(s)	489, 730, 858
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	6 cut(s)	218, 349, 405, 443, 880, 901
BstNSI	RCATGY	2 cut(s)	420, 691
BstSCI	CCNGG	6 cut(s)	216, 347, 403, 441, 878, 899
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	2 cut(s)	14, 528
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	917
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BstZI	CGGCCG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	7 cut(s)	26, 165, 169, 262, 588, 892, 934
BtsCI	GGATG	3 cut(s)	342, 475, 780
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	4 cut(s)	56, 167, 418, 597
CfoI	GCGC	2 cut(s)	189, 530
Cfr10I	RCCGGY	5 cut(s)	118, 139, 165, 236, 262
Cfr13I	GGNCC	3 cut(s)	25, 142, 933
CseI	GACGC	2 cut(s)	20, 70
CsiI	ACCWGGT	1 cut(s)	441
Csp6I	GTAC	7 cut(s)	61, 439, 691, 700, 739, 834, 919
CviAII	CATG	3 cut(s)	417, 499, 688
CviQI	GTAC	7 cut(s)	61, 439, 691, 700, 739, 834, 919
DdeI	CTNAG	2 cut(s)	744, 813
DpnI	GATC	3 cut(s)	491, 732, 860
DpnII	GATC	3 cut(s)	489, 730, 858
EaeI	YGGCCR	2 cut(s)	163, 586
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	21, 76, 465
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	575, 584
Eco88I	CYCGRG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	6 cut(s)	216, 347, 403, 441, 878, 899
EcoT14I	CCWWGG	3 cut(s)	21, 76, 465
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	3 cut(s)	21, 76, 465
FaeI	CATG	3 cut(s)	420, 502, 691
FaiI	YATR	8 cut(s)	243, 320, 354, 411, 418, 500, 645, 689
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	416, 498, 687
Fnu4HI	GCNGC	2 cut(s)	39, 104
FokI	GGATG	3 cut(s)	329, 482, 767
FriOI	GRGCYC	1 cut(s)	460
FseI	GGCCGGCC	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	39, 104
GlaI	GCGC	2 cut(s)	188, 529
GluI	GCNGC	2 cut(s)	39, 104
GsaI	CCCAGC	2 cut(s)	187, 812
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	7 cut(s)	26, 165, 169, 262, 588, 892, 934
HapII	CCGG	6 cut(s)	119, 140, 162, 166, 237, 263
HgaI	GACGC	2 cut(s)	20, 70
HhaI	GCGC	2 cut(s)	189, 530
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	420, 502, 691
Hin6I	GCGC	2 cut(s)	187, 528
HinP1I	GCGC	2 cut(s)	187, 528
HindIII	AAGCTT	1 cut(s)	815
HpaII	CCGG	6 cut(s)	119, 140, 162, 166, 237, 263
HphI	GGTGA	5 cut(s)	188, 226, 277, 425, 583
Hpy166II	GTNNAC	2 cut(s)	388, 741
Hpy188I	TCNGA	3 cut(s)	115, 717, 735
Hpy188III	TCNNGA	2 cut(s)	553, 793
Hpy8I	GTNNAC	2 cut(s)	388, 741
Hpy99I	CGWCG	3 cut(s)	11, 14, 86
HpyAV	CCTTC	5 cut(s)	82, 252, 270, 562, 877
HpyCH4III	ACNGT	4 cut(s)	111, 232, 631, 704
HpyCH4IV	ACGT	1 cut(s)	917
HpyCH4V	TGCA	4 cut(s)	416, 420, 780, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	744, 813
HpySE526I	ACGT	1 cut(s)	917
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	420, 502, 691
HspAI	GCGC	2 cut(s)	187, 528
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	489, 730, 858
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	4 cut(s)	351, 460, 789, 935
MabI	ACCWGGT	1 cut(s)	441
MaeII	ACGT	1 cut(s)	917
MaeIII	GTNAC	2 cut(s)	232, 704
MalI	GATC	3 cut(s)	491, 732, 860
MboI	GATC	3 cut(s)	489, 730, 858
MboII	GAAGA	6 cut(s)	568, 577, 586, 589, 631, 922
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	3 cut(s)	16, 842, 850
MluNI	TGGCCA	1 cut(s)	588
Mox20I	TGGCCA	1 cut(s)	588
MroNI	GCCGGC	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	588
MslI	CAYNNNNRTG	2 cut(s)	516, 746
Msp20I	TGGCCA	1 cut(s)	588
MspI	CCGG	6 cut(s)	119, 140, 162, 166, 237, 263
MspR9I	CCNGG	6 cut(s)	218, 349, 405, 443, 880, 901
MvaI	CCWGG	6 cut(s)	218, 349, 405, 443, 880, 901
MvnI	CGCG	2 cut(s)	14, 528
MwoI	GCNNNNNNNGC	1 cut(s)	162
NaeI	GCCGGC	1 cut(s)	167
NdeII	GATC	3 cut(s)	489, 730, 858
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	3 cut(s)	420, 502, 691
NlaIV	GGNNCC	3 cut(s)	70, 144, 157
NmeAIII	GCCGAG	2 cut(s)	132, 499
NmuCI	GTSAC	2 cut(s)	232, 704
NspI	RCATGY	2 cut(s)	420, 691
PaeI	GCATGC	1 cut(s)	420
PciI	ACATGT	1 cut(s)	687
PciSI	GCTCTTC	1 cut(s)	572
PdiI	GCCGGC	1 cut(s)	167
PflMI	CCANNNNNTGG	2 cut(s)	448, 543
PfoI	TCCNGGA	1 cut(s)	878
PkrI	GCNGC	2 cut(s)	40, 105
Ppu21I	YACGTR	1 cut(s)	918
PscI	ACATGT	1 cut(s)	687
PsiI	TTATAA	1 cut(s)	320
Psp6I	CCWGG	6 cut(s)	216, 347, 403, 441, 878, 899
PspFI	CCCAGC	2 cut(s)	183, 808
PspGI	CCWGG	6 cut(s)	216, 347, 403, 441, 878, 899
PspN4I	GGNNCC	3 cut(s)	70, 144, 157
PspPI	GGNCC	3 cut(s)	25, 142, 933
PsuI	RGATCY	1 cut(s)	489
RigI	GGCCGGCC	1 cut(s)	169
RsaI	GTAC	7 cut(s)	62, 440, 692, 701, 740, 835, 920
RsaNI	GTAC	7 cut(s)	61, 439, 691, 700, 739, 834, 919
RseI	CAYNNNNRTG	2 cut(s)	516, 746
SapI	GCTCTTC	1 cut(s)	572
SatI	GCNGC	2 cut(s)	39, 104
Sau3AI	GATC	3 cut(s)	489, 730, 858
Sau96I	GGNCC	3 cut(s)	25, 142, 933
ScaI	AGTACT	1 cut(s)	62
ScrFI	CCNGG	6 cut(s)	218, 349, 405, 443, 880, 901
SduI	GDGCHC	1 cut(s)	460
SexAI	ACCWGGT	1 cut(s)	441
SfaNI	GCATC	4 cut(s)	351, 460, 789, 935
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	516, 746
SphI	GCATGC	1 cut(s)	420
Sse9I	AATT	3 cut(s)	16, 842, 850
SsiI	CCGC	3 cut(s)	39, 101, 496
StyD4I	CCNGG	6 cut(s)	216, 347, 403, 441, 878, 899
StyI	CCWWGG	3 cut(s)	21, 76, 465
TaaI	ACNGT	4 cut(s)	111, 232, 631, 704
TaiI	ACGT	1 cut(s)	920
TasI	AATT	3 cut(s)	16, 842, 850
TatI	WGTACW	3 cut(s)	60, 690, 738
TauI	GCSGC	1 cut(s)	41
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	2 cut(s)	232, 704
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	2 cut(s)	232, 704
TspDTI	ATGAA	1 cut(s)	515
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	748
Van91I	CCANNNNNTGG	2 cut(s)	448, 543
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	2 cut(s)	420, 691
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.