Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Forward (+)

30557078 .. 30557998

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG190600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGGCGGCTCCAAGGGACATCCGCTGCCGTGGCTGTCGGCCTAATCTTTATGACGCGAATTCCAAGACCCGAGGACTTGCCGCCGACCACCAGAGCCAGCAGTACTACGACACCTTCCAAGGCGTCGCCAACTACCCCCCTCCGCAGCCACCGTCCGAGCCGGTAGTCGGTTTCCTTACGCCAGTCCCTACTCTCGGCTCCTCCGGCCGGCCTCCTCTACCTCCCCAGCGCCACCACCACCACCAGGGATACCAAACTGTCACCGGTTATGCTGTTGTTGAGGGAAGGCCTGTGAGGGAACGAAGGCTTCCGTGCTGTGGTCTTGGAAGCGGCTGGTTATTGAATAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

118

Amino Acids

12.94

Weight (kDa)

9.5

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	59
AciI	CCGC	6 cut(s)	5, 8, 25, 84, 146, 333
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	5 cut(s)	170, 197, 210, 247, 320
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	4 cut(s)	41, 208, 212, 290
ApeKI	GCWGC	2 cut(s)	27, 148
ApoI	RAATTY	1 cut(s)	61
AsiGI	ACCGGT	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	14, 160
BceAI	ACGGC	1 cut(s)	15
BciT130I	CCWGG	1 cut(s)	248
BciVI	GTATCC	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	6 cut(s)	6, 9, 28, 84, 149, 334
BlsI	GCNGC	6 cut(s)	7, 10, 29, 85, 150, 335
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	12, 202
BmrFI	CCNGG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	5 cut(s)	14, 31, 73, 121, 247
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	5 cut(s)	170, 197, 210, 247, 320
Bse118I	RCCGGY	3 cut(s)	163, 210, 266
Bse1I	ACTGG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	5 cut(s)	14, 31, 73, 121, 247
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	5 cut(s)	170, 197, 210, 247, 320
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	193, 207
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	14, 160
BseYI	CCCAGC	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	4 cut(s)	43, 210, 214, 292
BshTI	ACCGGT	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	4 cut(s)	164, 207, 211, 267
BslFI	GGGAC	2 cut(s)	32, 173
BslI	CCNNNNNNNGG	5 cut(s)	170, 197, 210, 247, 320
BsmFI	GGGAC	2 cut(s)	32, 173
BsnI	GGCC	4 cut(s)	43, 210, 214, 292
BsoBI	CYCGRG	1 cut(s)	72
BspACI	CCGC	6 cut(s)	5, 8, 25, 84, 146, 333
BspANI	GGCC	4 cut(s)	43, 210, 214, 292
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	12, 202
BsrFI	RCCGGY	3 cut(s)	163, 210, 266
BsrI	ACTGG	1 cut(s)	185
BssAI	RCCGGY	3 cut(s)	163, 210, 266
BssECI	CCNNGG	5 cut(s)	14, 31, 73, 121, 247
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	14, 121
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	156, 262
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	101, 212
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	234
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 207
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	14, 160
BstZI	CGGCCG	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	4 cut(s)	43, 210, 214, 292
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	101, 212
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	3 cut(s)	163, 210, 266
CseI	GACGC	2 cut(s)	65, 115
Csp6I	GTAC	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	266
CviQI	GTAC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	208
EagI	CGGCCG	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	14, 121
Eco147I	AGGCCT	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	14, 121
ErhI	CCWWGG	2 cut(s)	14, 121
FaiI	YATR	2 cut(s)	54, 273
FaqI	GGGAC	2 cut(s)	32, 173
Fnu4HI	GCNGC	6 cut(s)	6, 9, 28, 84, 149, 334
FokI	GGATG	1 cut(s)	8
FseI	GGCCGGCC	1 cut(s)	214
Fsp4HI	GCNGC	6 cut(s)	6, 9, 28, 84, 149, 334
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	6 cut(s)	6, 9, 28, 84, 149, 334
GsaI	CCCAGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	4 cut(s)	43, 210, 214, 292
HapII	CCGG	4 cut(s)	164, 207, 211, 267
HgaI	GACGC	2 cut(s)	65, 115
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HpaII	CCGG	4 cut(s)	164, 207, 211, 267
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	127, 282, 300
HpyCH4III	ACNGT	2 cut(s)	156, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 207
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	1 cut(s)	232
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
LmnI	GCTCC	2 cut(s)	16, 206
Lsp1109I	GCAGC	2 cut(s)	14, 160
MaeIII	GTNAC	1 cut(s)	262
MluCI	AATT	1 cut(s)	61
MnlI	CCTC	8 cut(s)	68, 153, 214, 225, 228, 234, 277, 291
MroNI	GCCGGC	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	4 cut(s)	164, 207, 211, 267
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	33, 207
NaeI	GCCGGC	1 cut(s)	212
NgoMIV	GCCGGC	1 cut(s)	210
NlaIV	GGNNCC	2 cut(s)	12, 202
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	266
PkrI	GCNGC	6 cut(s)	7, 10, 29, 85, 150, 335
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	12, 202
RigI	GGCCGGCC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	6 cut(s)	6, 9, 28, 84, 149, 334
ScaI	AGTACT	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	2 cut(s)	119, 226
Sse9I	AATT	1 cut(s)	61
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	6 cut(s)	5, 8, 25, 84, 146, 333
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	2 cut(s)	14, 121
TaaI	ACNGT	2 cut(s)	156, 262
TasI	AATT	1 cut(s)	61
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	4 cut(s)	8, 11, 86, 336
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	27, 148
Tsp45I	GTSAC	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	303
XapI	RAATTY	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.