Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Forward (+)

24508813 .. 24510082

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGCAACGACTCCAAGACCAGAGGCCTTTCCGGCGACCAGCAGGGGCAGAGCCAGACCCAGCAGCAGTACTACGGCACCTTCCAAGGCGTCGCCAACTACTACCCTCCGCCGCCGCAGCCACCGCCTGAGCCGGTTGTCGGGTTTCCTCAGCCGGTCCCACCTCCCCGTTCATCCGGCCGTCCTCCGTTGCCTCCCCATCACCACCACCACCACCACCACCACCATCACCAACATGGATACCAAACGGTTACTGGTTATGCTGTTGTGGAAGGAAGACCTGTAAGGGAACGACGCCTTCCTTGCTGTGGCATCGGCATAGGCTGGTTATTGTTTATAGCAGGTTTCTTTCTTGGAGGCATCCCCTGGTATGTTGGAACTTTCATCTTACTTTGTGTGCAGGTGGACTACAGAGAAAAACCTGGATATGTAGCATGCACAATAGCTGTAAGTGTTCCTTCCTTATGTTTTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

160

Amino Acids

17.64

Weight (kDa)

8.66

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	2 cut(s)	332, 391
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	4 cut(s)	110, 113, 116, 125
AcoI	YGGCCR	1 cut(s)	178
AcyI	GRCGYC	2 cut(s)	90, 295
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	140, 308
AjnI	CCWGG	2 cut(s)	365, 421
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
AoxI	GGCC	2 cut(s)	25, 178
ApeKI	GCWGC	2 cut(s)	64, 118
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	194, 221
AvaII	GGWCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	76, 130
BccI	CCATC	2 cut(s)	207, 234
BceAI	ACGGC	2 cut(s)	91, 165
BciT130I	CCWGG	2 cut(s)	367, 423
BciVI	GTATCC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	409
BfuAI	ACCTGC	2 cut(s)	332, 391
BfuI	GTATCC	1 cut(s)	233
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	4 cut(s)	65, 113, 116, 119
BlsI	GCNGC	4 cut(s)	66, 114, 117, 120
BmcAI	AGTACT	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	367, 423
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	79, 159
BmrFI	CCNGG	2 cut(s)	367, 423
BmsI	GCATC	2 cut(s)	321, 369
BpiI	GAAGAC	1 cut(s)	283
Bpu10I	CCTNAGC	2 cut(s)	129, 150
BsaHI	GRCGYC	2 cut(s)	90, 295
BsaJI	CCNNGG	2 cut(s)	85, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 308
Bse118I	RCCGGY	2 cut(s)	133, 154
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	367, 423
BseDI	CCNNGG	2 cut(s)	85, 365
BseGI	GGATG	2 cut(s)	173, 360
BseLI	CCNNNNNNNGG	2 cut(s)	140, 308
BseMII	CTCAG	2 cut(s)	120, 164
BseNI	ACTGG	1 cut(s)	259
BseX3I	CGGCCG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	76, 130
BseYI	CCCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	419
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	27, 180
BshNI	GGYRCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	4 cut(s)	33, 134, 155, 177
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	140, 308
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	27, 180
BspACI	CCGC	4 cut(s)	110, 113, 116, 125
BspANI	GGCC	2 cut(s)	27, 180
BspCNI	CTCAG	2 cut(s)	121, 163
BspLI	GGNNCC	2 cut(s)	79, 159
BspMI	ACCTGC	2 cut(s)	332, 391
BspT107I	GGYRCC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	133, 154
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	2 cut(s)	133, 154
BssECI	CCNNGG	2 cut(s)	85, 365
BssNI	GRCGYC	2 cut(s)	90, 295
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	367, 423
Bst4CI	ACNGT	1 cut(s)	250
BstACI	GRCGYC	2 cut(s)	90, 295
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	129, 150
BstF5I	GGATG	2 cut(s)	173, 360
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 118, 124, 303
BstNI	CCWGG	2 cut(s)	367, 423
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	365, 421
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	76, 130
BstV2I	GAAGAC	1 cut(s)	283
BstZI	CGGCCG	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	27, 180
BtsCI	GGATG	2 cut(s)	173, 360
BveI	ACCTGC	2 cut(s)	332, 391
Cac8I	GCNNGC	1 cut(s)	436
Cfr10I	RCCGGY	2 cut(s)	133, 154
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	2 cut(s)	79, 303
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	236, 435
CviJI	RGCY	8 cut(s)	27, 54, 121, 133, 154, 180, 324, 446
CviKI_1	RGCY	8 cut(s)	27, 54, 121, 133, 154, 180, 324, 446
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	129, 150
EaeI	YGGCCR	1 cut(s)	178
EagI	CGGCCG	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	157
Eco52I	CGGCCG	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	365, 421
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	2 cut(s)	239, 438
FaiI	YATR	9 cut(s)	237, 261, 320, 338, 372, 429, 436, 466, 478
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	235, 434
Fnu4HI	GCNGC	4 cut(s)	65, 113, 116, 119
FokI	GGATG	2 cut(s)	160, 347
Fsp4HI	GCNGC	4 cut(s)	65, 113, 116, 119
GluI	GCNGC	4 cut(s)	65, 113, 116, 119
GsaI	CCCAGC	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	27, 180
HapII	CCGG	4 cut(s)	33, 134, 155, 177
HgaI	GACGC	2 cut(s)	79, 303
Hin1I	GRCGYC	2 cut(s)	90, 295
Hin1II	CATG	2 cut(s)	239, 438
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	4 cut(s)	33, 134, 155, 177
HphI	GGTGA	2 cut(s)	194, 221
Hpy166II	GTNNAC	1 cut(s)	406
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	2 cut(s)	95, 297
HpyAV	CCTTC	4 cut(s)	91, 266, 308, 468
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	400, 438
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 118, 124, 303
HpyF3I	CTNAG	2 cut(s)	129, 150
Hsp92I	GRCGYC	2 cut(s)	90, 295
Hsp92II	CATG	2 cut(s)	239, 438
Lsp1109I	GCAGC	2 cut(s)	76, 130
LweI	GCATC	2 cut(s)	321, 369
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	7 cut(s)	17, 117, 159, 174, 195, 204, 350
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	4 cut(s)	33, 134, 155, 177
MspR9I	CCNGG	2 cut(s)	367, 423
MvaI	CCWGG	2 cut(s)	367, 423
MwoI	GCNNNNNNNGC	4 cut(s)	33, 118, 124, 303
NlaIII	CATG	2 cut(s)	239, 438
NlaIV	GGNNCC	2 cut(s)	79, 159
NspI	RCATGY	1 cut(s)	438
PaeI	GCATGC	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	66, 114, 117, 120
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Psp6I	CCWGG	2 cut(s)	365, 421
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	2 cut(s)	365, 421
PspN4I	GGNNCC	2 cut(s)	79, 159
PspPI	GGNCC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	234
SatI	GCNGC	4 cut(s)	65, 113, 116, 119
Sau96I	GGNCC	1 cut(s)	157
ScaI	AGTACT	1 cut(s)	71
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	2 cut(s)	367, 423
SetI	ASST	7 cut(s)	83, 166, 283, 346, 405, 424, 448
SfaNI	GCATC	2 cut(s)	321, 369
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	438
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	4 cut(s)	110, 113, 116, 125
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	365, 421
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	2 cut(s)	115, 118
TseI	GCWGC	2 cut(s)	64, 118
TspDTI	ATGAA	2 cut(s)	162, 373
TspGWI	ACGGA	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	2 cut(s)	233, 251
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.