Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Reverse (-)

27299625 .. 27301893

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGGCAGCTCCAAGGGACATCCGCTGCCGCGGCTGTCGATGTCGTCAGCGCAGGGAGTGGGAAATGATCAGGGGATTGGTTTGGGATCTGCGTCCGGATCGGTTTCCAACCCGAGGACTTGTCGCCGACCACCAGAGCCAGCAGTACTACGACACCTTCCAAGGCGTCGCCAACTACCCCCCTTCGCAGCCACCGTCCGAGCCGGTAGTCGATTTCCCTACGCCAGTCCCTCCTCTAGGCTCCTCCGACCGACCTCCTCTACCTCCCCAGCGCCACCATCACCACCACCACCACCACCACCAGGGATACCAAACTGTCACCGGTTATGTTGTTGTTAAGGGAAGGCCTGTGAGGGAACGAAGGCTTCCGTGCTGTGGTCTTGGAAGCGGCTGGTTATTGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCTGGTATATTGGAACTTTTATTTTACTTTGTGTGAGGGTGGACTACAGAGAAAAACCTGGATATGTTGCATGCACATTAGCATCAATTATTGCAGTGCTAGCTATCACTCTTGGCGTTACAAAGCGAACTCACAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

191

Amino Acids

21.84

Weight (kDa)

9.63

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AccII	CGCG	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	5 cut(s)	5, 25, 31, 33, 390
AclWI	GGATC	2 cut(s)	96, 108
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	4 cut(s)	116, 239, 304, 377
AgeI	ACCGGT	1 cut(s)	323
AjnI	CCWGG	3 cut(s)	303, 434, 490
AluBI	AGCT	2 cut(s)	11, 536
AluI	AGCT	2 cut(s)	11, 536
AlwI	GGATC	2 cut(s)	96, 108
Ama87I	CYCGRG	1 cut(s)	114
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	3 cut(s)	8, 27, 190
AsiGI	ACCGGT	1 cut(s)	323
AspLEI	GCGC	2 cut(s)	54, 276
AsuHPI	GGTGA	2 cut(s)	275, 313
AsuNHI	GCTAGC	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	14, 20, 202
BccI	CCATC	1 cut(s)	288
BciT130I	CCWGG	3 cut(s)	305, 436, 492
BciVI	GTATCC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	69
BfaI	CTAG	2 cut(s)	239, 533
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	302
BisI	GCNGC	7 cut(s)	6, 9, 28, 31, 34, 191, 391
BlsI	GCNGC	7 cut(s)	7, 10, 29, 32, 35, 192, 392
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	3 cut(s)	305, 436, 492
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	3 cut(s)	305, 436, 492
BmsI	GCATC	2 cut(s)	438, 524
BmtI	GCTAGC	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	6 cut(s)	14, 31, 115, 163, 304, 434
BsaWI	WCCGGW	2 cut(s)	97, 323
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 239, 304, 377
Bse118I	RCCGGY	2 cut(s)	205, 323
Bse1I	ACTGG	2 cut(s)	227, 575
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	3 cut(s)	305, 436, 492
BseDI	CCNNGG	6 cut(s)	14, 31, 115, 163, 304, 434
BseGI	GGATG	2 cut(s)	21, 429
BseLI	CCNNNNNNNGG	4 cut(s)	116, 239, 304, 377
BseNI	ACTGG	2 cut(s)	227, 575
BseRI	GAGGAG	3 cut(s)	225, 235, 249
BseXI	GCAGC	3 cut(s)	14, 20, 202
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	98, 206, 324
BslFI	GGGAC	2 cut(s)	32, 215
BslI	CCNNNNNNNGG	4 cut(s)	116, 239, 304, 377
BsmFI	GGGAC	2 cut(s)	32, 215
BsnI	GGCC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	69, 88, 100
BspACI	CCGC	5 cut(s)	5, 25, 31, 33, 390
BspANI	GGCC	1 cut(s)	349
BspEI	TCCGGA	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	536
BspPI	GGATC	2 cut(s)	96, 108
BsrFI	RCCGGY	2 cut(s)	205, 323
BsrI	ACTGG	2 cut(s)	227, 575
BssAI	RCCGGY	2 cut(s)	205, 323
BssECI	CCNNGG	6 cut(s)	14, 31, 115, 163, 304, 434
BssMI	GATC	3 cut(s)	69, 88, 100
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	14, 163
Bst2UI	CCWGG	3 cut(s)	305, 436, 492
Bst4CI	ACNGT	2 cut(s)	198, 319
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	143, 505, 534
BstDSI	CCRYGG	1 cut(s)	31
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	21, 429
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	54, 276
BstKTI	GATC	3 cut(s)	72, 91, 103
BstMBI	GATC	3 cut(s)	69, 88, 100
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 533
BstNI	CCWGG	3 cut(s)	305, 436, 492
BstNSI	RCATGY	1 cut(s)	507
BstSCI	CCNGG	3 cut(s)	303, 434, 490
BstSFI	CTRYAG	1 cut(s)	478
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	14, 20, 202
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	21, 429
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	3 cut(s)	143, 505, 534
CfoI	GCGC	2 cut(s)	54, 276
Cfr10I	RCCGGY	2 cut(s)	205, 323
Cfr42I	CCGCGG	1 cut(s)	34
CseI	GACGC	2 cut(s)	83, 157
Csp6I	GTAC	1 cut(s)	148
CspAI	ACCGGT	1 cut(s)	323
CviAII	CATG	1 cut(s)	504
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	3 cut(s)	71, 90, 102
DpnII	GATC	3 cut(s)	69, 88, 100
Eco130I	CCWWGG	2 cut(s)	14, 163
Eco147I	AGGCCT	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	114
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRII	CCWGG	3 cut(s)	303, 434, 490
EcoT14I	CCWWGG	2 cut(s)	14, 163
ErhI	CCWWGG	2 cut(s)	14, 163
FaeI	CATG	1 cut(s)	507
FaiI	YATR	5 cut(s)	330, 407, 441, 498, 505
FaqI	GGGAC	2 cut(s)	32, 215
FatI	CATG	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	7 cut(s)	6, 9, 28, 31, 34, 191, 391
FokI	GGATG	2 cut(s)	8, 416
Fsp4HI	GCNGC	7 cut(s)	6, 9, 28, 31, 34, 191, 391
FspBI	CTAG	2 cut(s)	239, 533
GlaI	GCGC	2 cut(s)	53, 275
GluI	GCNGC	7 cut(s)	6, 9, 28, 31, 34, 191, 391
GsaI	CCCAGC	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	3 cut(s)	98, 206, 324
HgaI	GACGC	2 cut(s)	83, 157
HhaI	GCGC	2 cut(s)	54, 276
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	507
Hin6I	GCGC	2 cut(s)	52, 274
HinP1I	GCGC	2 cut(s)	52, 274
HpaII	CCGG	3 cut(s)	98, 206, 324
HphI	GGTGA	2 cut(s)	275, 313
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	2 cut(s)	202, 250
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	169, 195, 339, 357
HpyCH4III	ACNGT	2 cut(s)	198, 319
HpyCH4V	TGCA	3 cut(s)	503, 507, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 533
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	507
HspAI	GCGC	2 cut(s)	52, 274
Kpn2I	TCCGGA	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	69
KspI	CCGCGG	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	69, 88, 100
LmnI	GCTCC	2 cut(s)	16, 248
Lsp1109I	GCAGC	3 cut(s)	14, 20, 202
LweI	GCATC	2 cut(s)	438, 524
MaeI	CTAG	2 cut(s)	239, 533
MaeIII	GTNAC	2 cut(s)	319, 550
MalI	GATC	3 cut(s)	71, 90, 102
MboI	GATC	3 cut(s)	69, 88, 100
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	1 cut(s)	519
MmeI	TCCRAC	2 cut(s)	134, 273
MnlI	CCTC	9 cut(s)	110, 243, 246, 256, 267, 270, 276, 348, 462
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	2 cut(s)	27, 33
MspI	CCGG	3 cut(s)	98, 206, 324
MspR9I	CCNGG	3 cut(s)	305, 436, 492
MvaI	CCWGG	3 cut(s)	305, 436, 492
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	33, 533
NdeII	GATC	3 cut(s)	69, 88, 100
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	1 cut(s)	507
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	507
PaeI	GCATGC	1 cut(s)	507
PceI	AGGCCT	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	7 cut(s)	7, 10, 29, 32, 35, 192, 392
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	3 cut(s)	303, 434, 490
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	3 cut(s)	303, 434, 490
PspN4I	GGNNCC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacII	CCGCGG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	7 cut(s)	6, 9, 28, 31, 34, 191, 391
Sau3AI	GATC	3 cut(s)	69, 88, 100
ScaI	AGTACT	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	305, 436, 492
SetI	ASST	6 cut(s)	13, 161, 259, 268, 493, 538
SfaNI	GCATC	2 cut(s)	438, 524
SfcI	CTRYAG	1 cut(s)	478
Sfr303I	CCGCGG	1 cut(s)	34
SgrBI	CCGCGG	1 cut(s)	34
SphI	GCATGC	1 cut(s)	507
Sse9I	AATT	1 cut(s)	519
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	5 cut(s)	5, 25, 31, 33, 390
SspMI	CTAG	2 cut(s)	239, 533
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	3 cut(s)	303, 434, 490
StyI	CCWWGG	2 cut(s)	14, 163
TaaI	ACNGT	2 cut(s)	198, 319
TaqI	TCGA	2 cut(s)	40, 213
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	519
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	4 cut(s)	8, 33, 36, 393
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	8, 27, 190
Tsp45I	GTSAC	1 cut(s)	319
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	534
XagI	CCTNNNNNAGG	1 cut(s)	237
XceI	RCATGY	1 cut(s)	507
XspI	CTAG	2 cut(s)	239, 533
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.