Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Reverse (-)

33000153 .. 33001934

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACGCGAATTCCAAGACCCGAGGACTTGCCGCCGACCACCAGAGCCAGCAGTACTACGACACCTTCCAAGGCGTCGCCAACTACCCCCTCCGCAGCCACCGTCCGAGCCGGTAGTCGGTTTCCCTACGCCAGTCCCTCCTCTCGGCTCCTCCGGCCGGCCTCCTCTACCTCCCCAGCGCCACCATCACCACCACCACCAGGGATACCAAACTGTTATGTTGTTGTTGAGGGAAGGCCTGTGAGGGAACGAAGGCTTCCGTGCTGTGGTCTTGGAAGCGGCTGGTTATTGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCTGGTATATTGGAACGTTTATTTTACTTTGTGTGAGGGTGGACTACAGAGAAAAACCTGGATATGTTGCATGCACATTAGCATCAATTATTGCAGTGCTAGCTATCACTCTTGGCGTTACAAAGCGAACTCACAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.57

Weight (kDa)

10.23

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	32, 93, 279
AclI	AACGTT	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	5 cut(s)	117, 144, 157, 200, 266
AjnI	CCWGG	3 cut(s)	199, 323, 379
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	3 cut(s)	155, 159, 236
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	180
AsuNHI	GCTAGC	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	3 cut(s)	201, 325, 381
BciVI	GTATCC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	3 cut(s)	32, 96, 280
BlsI	GCNGC	3 cut(s)	33, 97, 281
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	3 cut(s)	201, 325, 381
BmeT110I	CYCGRG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	3 cut(s)	201, 325, 381
BmsI	GCATC	2 cut(s)	327, 413
BmtI	GCTAGC	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	21, 69, 200, 323
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 144, 157, 200, 266
Bse118I	RCCGGY	2 cut(s)	110, 157
Bse1I	ACTGG	2 cut(s)	132, 464
BseBI	CCWGG	3 cut(s)	201, 325, 381
BseDI	CCNNGG	4 cut(s)	21, 69, 200, 323
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	5 cut(s)	117, 144, 157, 200, 266
BseNI	ACTGG	2 cut(s)	132, 464
BseRI	GAGGAG	3 cut(s)	130, 140, 154
BseX3I	CGGCCG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	107
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	3 cut(s)	157, 161, 238
BsiEI	CGRYCG	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	3 cut(s)	111, 154, 158
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	5 cut(s)	117, 144, 157, 200, 266
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	157, 161, 238
BsoBI	CYCGRG	1 cut(s)	20
BspACI	CCGC	3 cut(s)	32, 93, 279
BspANI	GGCC	3 cut(s)	157, 161, 238
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	149
BspOI	GCTAGC	1 cut(s)	425
BsrFI	RCCGGY	2 cut(s)	110, 157
BsrI	ACTGG	2 cut(s)	132, 464
BssAI	RCCGGY	2 cut(s)	110, 157
BssECI	CCNNGG	4 cut(s)	21, 69, 200, 323
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	3 cut(s)	201, 325, 381
Bst4CI	ACNGT	2 cut(s)	103, 215
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	4 cut(s)	49, 159, 394, 423
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 422
BstNI	CCWGG	3 cut(s)	201, 325, 381
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	3 cut(s)	199, 323, 379
BstSFI	CTRYAG	1 cut(s)	367
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	157, 161, 238
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	4 cut(s)	49, 159, 394, 423
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	2 cut(s)	110, 157
CseI	GACGC	2 cut(s)	13, 63
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	393
CviQI	GTAC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	155
EagI	CGGCCG	1 cut(s)	155
EclXI	CGGCCG	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	238
Eco52I	CGGCCG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	9
EcoRII	CCWGG	3 cut(s)	199, 323, 379
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	396
FaiI	YATR	5 cut(s)	219, 296, 330, 387, 394
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	32, 96, 280
FokI	GGATG	1 cut(s)	305
FseI	GGCCGGCC	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	32, 96, 280
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	3 cut(s)	32, 96, 280
GsaI	CCCAGC	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	157, 161, 238
HapII	CCGG	3 cut(s)	111, 154, 158
HgaI	GACGC	2 cut(s)	13, 63
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	396
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HpaII	CCGG	3 cut(s)	111, 154, 158
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	75, 228, 246
HpyCH4III	ACNGT	2 cut(s)	103, 215
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	3 cut(s)	392, 396, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 422
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	396
HspAI	GCGC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	2 cut(s)	327, 413
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	439
MluCI	AATT	2 cut(s)	9, 408
MroNI	GCCGGC	1 cut(s)	157
MspI	CCGG	3 cut(s)	111, 154, 158
MspR9I	CCNGG	3 cut(s)	201, 325, 381
MvaI	CCWGG	3 cut(s)	201, 325, 381
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	154, 422
NaeI	GCCGGC	1 cut(s)	159
NgoMIV	GCCGGC	1 cut(s)	157
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	1 cut(s)	396
NlaIV	GGNNCC	1 cut(s)	149
NmeAIII	GCCGAG	1 cut(s)	124
NspI	RCATGY	1 cut(s)	396
PaeI	GCATGC	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	238
PdiI	GCCGGC	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	33, 97, 281
PsiI	TTATAA	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	338
Psp6I	CCWGG	3 cut(s)	199, 323, 379
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	3 cut(s)	199, 323, 379
PspN4I	GGNNCC	1 cut(s)	149
RigI	GGCCGGCC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SatI	GCNGC	3 cut(s)	32, 96, 280
ScaI	AGTACT	1 cut(s)	55
ScrFI	CCNGG	3 cut(s)	201, 325, 381
SetI	ASST	5 cut(s)	67, 173, 341, 382, 427
SfaNI	GCATC	2 cut(s)	327, 413
SfcI	CTRYAG	1 cut(s)	367
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	2 cut(s)	9, 408
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	3 cut(s)	32, 93, 279
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	3 cut(s)	199, 323, 379
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	103, 215
TaiI	ACGT	1 cut(s)	341
TasI	AATT	2 cut(s)	9, 408
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	2 cut(s)	34, 282
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	1 cut(s)	396
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.