Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Forward (+)

41910334 .. 41912250

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1285200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGCGACAACTCCAAGACCAGAACTCTCTCCGGCGACCAGCAGGGCCAGAGCCAGCAGCAGTACTACGGCACTTTCCAAGGCGTCGCCAACTACTACCCTCCGCCTCCGCAGCCTCCACCTGAGCCGGTCGTCGGTTTTCCTCAGCCCGTCCCACCTCCTGGTTACTCCGGCCGTCCTCCCTTGCCTCCCCATCACCACCACCACCACCAACATGGATACCAAACGGTCACTGGTTACGCTGTTGTGGAGGGAAGACCTGTTAGCGAACGCCGCCTTCCTTGCTGCGGCATCGGCATAGGCTGGTTATTGTTTATAACAGGGTTCTTTCTTGGAGGCATCCCCTGGTATGTTGGAACTTTCATCTTACTTTGTGTGCAGGTGGACTACAGAGAAAAGCCCGGATATGTAGCATGCACGATAGCTTCGATTCTTGCTGTGATTGCTGTTATTCTGAGCGTAACAAAGGGAAGCGAAAACCTGATGAGGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

166

Amino Acids

18.14

Weight (kDa)

8.37

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
AarI	CACCTGC	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	370
AccB7I	CCANNNNNTGG	1 cut(s)	161
AciI	CCGC	4 cut(s)	104, 110, 274, 288
AcoI	YGGCCR	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	134, 161, 287
AjnI	CCWGG	2 cut(s)	160, 344
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
AoxI	GGCC	2 cut(s)	46, 172
ApeKI	GCWGC	3 cut(s)	58, 112, 285
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	262
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	70, 124, 272
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	2 cut(s)	85, 159
BciT130I	CCWGG	2 cut(s)	162, 346
BciVI	GTATCC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	5 cut(s)	59, 113, 274, 286, 289
BlsI	GCNGC	5 cut(s)	60, 114, 275, 287, 290
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	3 cut(s)	162, 346, 402
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	3 cut(s)	162, 346, 402
BmsI	GCATC	2 cut(s)	300, 348
BpiI	GAAGAC	1 cut(s)	262
Bpu10I	CCTNAGC	2 cut(s)	123, 144
BpuMI	CCSGG	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	79, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 161, 287
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	162, 346
BseDI	CCNNGG	2 cut(s)	79, 344
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	134, 161, 287
BseMII	CTCAG	3 cut(s)	114, 158, 446
BseNI	ACTGG	1 cut(s)	238
BseX3I	CGGCCG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	70, 124, 272
BsgI	GTGCAG	1 cut(s)	398
Bsh1285I	CGRYCG	2 cut(s)	132, 175
BshFI	GGCC	2 cut(s)	48, 174
BsiEI	CGRYCG	2 cut(s)	132, 175
BsiSI	CCGG	4 cut(s)	33, 128, 171, 402
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	134, 161, 287
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	48, 174
BspACI	CCGC	4 cut(s)	104, 110, 274, 288
BspANI	GGCC	2 cut(s)	48, 174
BspCNI	CTCAG	3 cut(s)	115, 157, 447
BspMI	ACCTGC	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	79, 344
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	162, 346
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	56, 415
BstDEI	CTNAG	3 cut(s)	123, 144, 455
BstF5I	GGATG	1 cut(s)	339
BstMCI	CGRYCG	2 cut(s)	132, 175
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 273, 282, 294, 443
BstNI	CCWGG	2 cut(s)	162, 346
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	3 cut(s)	160, 344, 400
BstSFI	CTRYAG	1 cut(s)	388
BstV1I	GCAGC	3 cut(s)	70, 124, 272
BstV2I	GAAGAC	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstZI	CGGCCG	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	48, 174
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	56, 415
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	215, 414
CviJI	RGCY	9 cut(s)	48, 54, 115, 127, 148, 174, 303, 400, 425
CviKI_1	RGCY	9 cut(s)	48, 54, 115, 127, 148, 174, 303, 400, 425
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	123, 144, 455
EaeI	YGGCCR	1 cut(s)	172
EagI	CGGCCG	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	93
EclXI	CGGCCG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	160, 344
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	2 cut(s)	218, 417
FaiI	YATR	6 cut(s)	216, 299, 317, 351, 408, 415
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	214, 413
Fnu4HI	GCNGC	5 cut(s)	59, 113, 274, 286, 289
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	5 cut(s)	59, 113, 274, 286, 289
GluI	GCNGC	5 cut(s)	59, 113, 274, 286, 289
HaeIII	GGCC	2 cut(s)	48, 174
HapII	CCGG	4 cut(s)	33, 128, 171, 402
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	218, 417
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	4 cut(s)	33, 128, 171, 402
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	456
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	2 cut(s)	89, 137
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	379, 417
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 273, 282, 294, 443
HpyF3I	CTNAG	3 cut(s)	123, 144, 455
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	218, 417
Lsp1109I	GCAGC	3 cut(s)	70, 124, 272
LweI	GCATC	2 cut(s)	300, 348
MaeIII	GTNAC	4 cut(s)	164, 229, 236, 460
MboII	GAAGA	1 cut(s)	267
MluCI	AATT	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	334
MseI	TTAA	2 cut(s)	492, 496
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	4 cut(s)	33, 128, 171, 402
MspR9I	CCNGG	3 cut(s)	162, 346, 402
MvaI	CCWGG	2 cut(s)	162, 346
MwoI	GCNNNNNNNGC	5 cut(s)	112, 273, 282, 294, 443
NciI	CCSGG	1 cut(s)	402
NlaIII	CATG	2 cut(s)	218, 417
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	417
PacI	TTAATTAA	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	417
PaqCI	CACCTGC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	60, 114, 275, 287, 290
PsiI	TTATAA	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	160, 344
PspGI	CCWGG	2 cut(s)	160, 344
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	492, 496
SatI	GCNGC	5 cut(s)	59, 113, 274, 286, 289
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	162, 346, 402
SetI	ASST	7 cut(s)	124, 160, 262, 384, 427, 483, 491
SfaNI	GCATC	2 cut(s)	300, 348
SfcI	CTRYAG	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	417
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	4 cut(s)	104, 110, 274, 288
StyD4I	CCNGG	3 cut(s)	160, 344, 400
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	428
TasI	AATT	1 cut(s)	493
TatI	WGTACW	1 cut(s)	63
TauI	GCSGC	2 cut(s)	276, 291
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	492, 496
Tru9I	TTAA	2 cut(s)	492, 496
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	58, 112, 285
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	161
XceI	RCATGY	1 cut(s)	417
XcmI	CCANNNNNNNNNTGG	2 cut(s)	212, 230
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.