RchiOBHm_Chr2g0090401

60S ribosomal protein L18a-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
4252103 .. 4253869
1767 bp
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UTR
Exon/CDS
Intron
PRQ46565

Sequence Viewer

Length: 258 bp
ATGATCCGTTATGTTGTTGTTGAGGGAAGGCCTGTGAGGGAACGAAGGCTTCCGTGCTGTGGTCTTGGAAGCGGCTGGTTATTGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCTGGTATATTGGAACTTTTATTTTACTTTGTGTGAGGGTGGACTACAGAGAAAAACCTGGATATGTTGCATGCACATTAGCATTAATTATTGCAGTGCTAGCTATCACTCTTGGCGTTACAAAGCGAACTCACAACTGGTGA

Protein Analysis

85

Amino Acids

9.63

Weight (kDa)

9.61

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AciI CCGC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 59
AjnI CCWGG 2 cut(s) 116, 172
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
AoxI GGCC 1 cut(s) 29
AseI ATTAAT 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 214
BciT130I CCWGG 2 cut(s) 118, 174
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 118, 174
BmrFI CCNGG 2 cut(s) 118, 174
BmsI GCATC 1 cut(s) 120
BmtI GCTAGC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 257
BseBI CCWGG 2 cut(s) 118, 174
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 257
BshFI GGCC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 118, 174
BstC8I GCNNGC 2 cut(s) 187, 216
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 2 cut(s) 118, 174
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 116, 172
BstSFI CTRYAG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 187, 216
CviAII CATG 1 cut(s) 186
CviJI RGCY 4 cut(s) 31, 49, 75, 218
CviKI_1 RGCY 4 cut(s) 31, 49, 75, 218
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 116, 172
FaeI CATG 1 cut(s) 189
FaiI YATR 5 cut(s) 12, 89, 123, 180, 187
FatI CATG 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 73
HaeIII GGCC 1 cut(s) 31
Hin1II CATG 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 21, 39
HpyCH4V TGCA 3 cut(s) 185, 189, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
Hsp92II CATG 1 cut(s) 189
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 7 cut(s) 45, 61, 103, 130, 159, 186, 238
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 1 cut(s) 201
MnlI CCTC 3 cut(s) 16, 30, 144
MseI TTAA 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 118, 174
MvaI CCWGG 2 cut(s) 118, 174
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 1 cut(s) 3
NheI GCTAGC 1 cut(s) 214
NlaIII CATG 1 cut(s) 189
NspI RCATGY 1 cut(s) 189
PaeI GCATGC 1 cut(s) 189
PceI AGGCCT 1 cut(s) 31
PkrI GCNGC 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 200
PsiI TTATAA 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 116, 172
PspGI CCWGG 2 cut(s) 116, 172
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 118, 174
SetI ASST 2 cut(s) 175, 220
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 160
SphI GCATGC 1 cut(s) 189
Sse9I AATT 1 cut(s) 201
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 215
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 2 cut(s) 116, 172
TasI AATT 1 cut(s) 201
TauI GCSGC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 1 cut(s) 216
VspI ATTAAT 1 cut(s) 200
XceI RCATGY 1 cut(s) 189
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.