Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Forward (+)

25859501 .. 25861255

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCATCCCTCCTCTCGGCTCCTCCGACCGGCCTCTCTACCTCCCACACCCCCAGTTATGTTGTTGTTGAGGGAAGGCCTGTGAGAACGAGGCTTCCGTGCTGTGGTCTTGGAAGCGGCTGGTTATTGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCTGGTATATTGGAACGTTTATTTTACTTTGTGTGAGGGTGGACTCAGAGAAAAACCTGGATATTGAGGTTTTTTACATTTCGTGCCCTAACATGGAACTATATACTTCATTTTCAGTCAATATTGCAGTGCTAGCTATCACTCTTGGCGTTACAAAGCGAACTCACAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.23

Weight (kDa)

7.68

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	134
AciI	CCGC	1 cut(s)	117
AclI	AACGTT	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	16, 29, 104, 253
AjnI	CCWGG	2 cut(s)	161, 216
AloI	GAACNNNNNNTCC	2 cut(s)	79, 111
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
AoxI	GGCC	2 cut(s)	31, 77
AsuNHI	GCTAGC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	163, 218
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	163, 218
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	163, 218
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	14, 165
BmtI	GCTAGC	1 cut(s)	296
BmuI	ACTGGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 29, 104, 253
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	54, 335
BseBI	CCWGG	2 cut(s)	163, 218
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	5, 156
BseLI	CCNNNNNNNGG	4 cut(s)	16, 29, 104, 253
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	54, 335
BseRI	GAGGAG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	33, 79
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	4 cut(s)	16, 29, 104, 253
BsnI	GGCC	2 cut(s)	33, 79
Bsp1286I	GDGCHC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	33, 79
BspCNI	CTCAG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	21
BspOI	GCTAGC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	54, 335
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	161
Bst2UI	CCWGG	2 cut(s)	163, 218
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	5, 156
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	2 cut(s)	163, 218
BstSCI	CCNGG	2 cut(s)	161, 216
BstSLI	GKGCMC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	33, 79
BtsCI	GGATG	2 cut(s)	5, 156
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	29
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	20, 33, 79, 94, 120, 296
CviKI_1	RGCY	6 cut(s)	20, 33, 79, 94, 120, 296
DdeI	CTNAG	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	161, 216
FaeI	CATG	1 cut(s)	256
FaiI	YATR	6 cut(s)	60, 134, 168, 254, 262, 264
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	33, 79
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	27, 208
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	69
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	9 cut(s)	43, 67, 93, 106, 148, 175, 203, 230, 316
LweI	GCATC	2 cut(s)	14, 165
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	9 cut(s)	20, 23, 33, 44, 52, 64, 84, 189, 220
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	163, 218
MvaI	CCWGG	2 cut(s)	163, 218
MwoI	GCNNNNNNNGC	1 cut(s)	293
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 95
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PsiI	TTATAA	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	161, 216
PspGI	CCWGG	2 cut(s)	161, 216
PspN4I	GGNNCC	1 cut(s)	21
SatI	GCNGC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	163, 218
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	5 cut(s)	44, 179, 219, 231, 298
SfaNI	GCATC	2 cut(s)	14, 165
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	2 cut(s)	161, 216
TaiI	ACGT	1 cut(s)	179
TauI	GCSGC	1 cut(s)	120
TscAI	CASTG	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	294
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.