Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Reverse (-)

9522256 .. 9525167

Gene Structure 2912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGCGACGACGCGAATTCCAAGGCCCGAGGGCTTGCCGCCGACCACCAGAGCCAGCAGTACTACGGCACCTTCCAAGGCGTCGCTAACTACCCCCCTCCGCAGCCACCGTCCGAGCCGGTAGTCGGTTTCCCTACGCCGGTCCCTCCTCTCGGCGCCTCCGGCCGGCCTCCTCTACCTCCCCAGCGCCACCATCATCACCACCACCACCATCACCACCAGGGATACCAAACCGTCACCGGTTATGCTGTTGTTGAGGGAAGACCTGTGAGGGAACGAAGGCTTCCGTGCTGTGGTCTTGGAAGCGGCTGGTTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

106

Amino Acids

11.62

Weight (kDa)

8.75

Isoelectric Point (pI)

65.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	68, 155
AccII	CGCG	1 cut(s)	14
AciI	CCGC	3 cut(s)	39, 101, 306
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	16
AcyI	GRCGYC	2 cut(s)	81, 156
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	5 cut(s)	125, 139, 152, 165, 293
AgeI	ACCGGT	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	3 cut(s)	24, 163, 167
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	16
AsiGI	ACCGGT	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	158, 189
AspS9I	GGNCC	2 cut(s)	25, 142
AsuHPI	GGTGA	3 cut(s)	191, 206, 229
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	142
BanI	GGYRCC	2 cut(s)	68, 155
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	2 cut(s)	201, 219
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	218
BfoI	RGCGCY	2 cut(s)	159, 190
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	3 cut(s)	39, 104, 307
BlsI	GCNGC	3 cut(s)	40, 105, 308
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	25, 142
BmiI	GGNNCC	3 cut(s)	70, 144, 157
BmrFI	CCNGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	268
BsaHI	GRCGYC	2 cut(s)	81, 156
BsaJI	CCNNGG	4 cut(s)	21, 28, 76, 220
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 139, 152, 165, 293
Bse118I	RCCGGY	4 cut(s)	118, 139, 165, 239
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	4 cut(s)	21, 28, 76, 220
BseLI	CCNNNNNNNGG	5 cut(s)	125, 139, 152, 165, 293
BseRI	GAGGAG	2 cut(s)	138, 162
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	26, 165, 169
BshNI	GGYRCC	2 cut(s)	68, 155
BshTI	ACCGGT	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	5 cut(s)	119, 140, 162, 166, 240
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	5 cut(s)	125, 139, 152, 165, 293
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	26, 165, 169
BsoBI	CYCGRG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	39, 101, 306
BspANI	GGCC	3 cut(s)	26, 165, 169
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	70, 144, 157
BspT107I	GGYRCC	2 cut(s)	68, 155
BsrFI	RCCGGY	4 cut(s)	118, 139, 165, 239
BssAI	RCCGGY	4 cut(s)	118, 139, 165, 239
BssECI	CCNNGG	4 cut(s)	21, 28, 76, 220
BssNI	GRCGYC	2 cut(s)	81, 156
BssT1I	CCWWGG	2 cut(s)	21, 76
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	111, 235
BstACI	GRCGYC	2 cut(s)	81, 156
BstC8I	GCNNGC	3 cut(s)	36, 56, 167
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	2 cut(s)	159, 190
BstHHI	GCGC	2 cut(s)	158, 189
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	26, 165, 169
Cac8I	GCNNGC	3 cut(s)	36, 56, 167
CfoI	GCGC	2 cut(s)	158, 189
Cfr10I	RCCGGY	4 cut(s)	118, 139, 165, 239
Cfr13I	GGNCC	2 cut(s)	25, 142
CseI	GACGC	2 cut(s)	20, 70
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	239
CviJI	RGCY	9 cut(s)	26, 34, 54, 106, 118, 165, 169, 283, 309
CviKI_1	RGCY	9 cut(s)	26, 34, 54, 106, 118, 165, 169, 283, 309
CviQI	GTAC	1 cut(s)	61
DinI	GGCGCC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	21, 76
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	21, 76
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	21, 76
FaiI	YATR	1 cut(s)	246
FaqI	GGGAC	1 cut(s)	128
Fnu4HI	GCNGC	3 cut(s)	39, 104, 307
FseI	GGCCGGCC	1 cut(s)	169
Fsp4HI	GCNGC	3 cut(s)	39, 104, 307
GlaI	GCGC	2 cut(s)	157, 188
GluI	GCNGC	3 cut(s)	39, 104, 307
GsaI	CCCAGC	1 cut(s)	187
HaeII	RGCGCY	2 cut(s)	159, 190
HaeIII	GGCC	3 cut(s)	26, 165, 169
HapII	CCGG	5 cut(s)	119, 140, 162, 166, 240
HgaI	GACGC	2 cut(s)	20, 70
HhaI	GCGC	2 cut(s)	158, 189
Hin1I	GRCGYC	2 cut(s)	81, 156
Hin6I	GCGC	2 cut(s)	156, 187
HinP1I	GCGC	2 cut(s)	156, 187
HpaII	CCGG	5 cut(s)	119, 140, 162, 166, 240
HphI	GGTGA	3 cut(s)	191, 206, 229
Hpy188I	TCNGA	1 cut(s)	115
Hpy99I	CGWCG	3 cut(s)	11, 14, 86
HpyAV	CCTTC	2 cut(s)	82, 273
HpyCH4III	ACNGT	2 cut(s)	111, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
Hsp92I	GRCGYC	2 cut(s)	81, 156
HspAI	GCGC	2 cut(s)	156, 187
KasI	GGCGCC	1 cut(s)	155
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Lsp1109I	GCAGC	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	273
MluCI	AATT	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	156
MroNI	GCCGGC	1 cut(s)	165
MspI	CCGG	5 cut(s)	119, 140, 162, 166, 240
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	162
NaeI	GCCGGC	1 cut(s)	167
NarI	GGCGCC	1 cut(s)	156
NgoMIV	GCCGGC	1 cut(s)	165
NlaIV	GGNNCC	3 cut(s)	70, 144, 157
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	40, 105, 308
PluTI	GGCGCC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	70, 144, 157
PspPI	GGNCC	2 cut(s)	25, 142
RigI	GGCCGGCC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SatI	GCNGC	3 cut(s)	39, 104, 307
Sau96I	GGNCC	2 cut(s)	25, 142
ScaI	AGTACT	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	3 cut(s)	74, 181, 268
SfoI	GGCGCC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	3 cut(s)	39, 101, 306
SspDI	GGCGCC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	21, 76
TaaI	ACNGT	2 cut(s)	111, 235
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	2 cut(s)	41, 309
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	16
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.