Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007053

Physical Location & Seq

Genomic Coordinates Reverse (-)

58198936 .. 58209419

Gene Structure 10484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG432800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTTCACTGGCACATGGAAGGAAGCTCTTGAATGGGCTTGTTATTTCGCTTTTACTTCCATGTTTGATATTCTCTCAACTCAGACAAGCAATCATTGGGGAGAAAATTCTCGAGTGGTTTATAATGGGGTTCTTTCTTGGTGGCATCCCCTGGTATATTGGAACTTTTATTTTACTTTGTGTGAGGGTGGACTACAGAGAAAAACCTGGATATGTTGCATGCACATTAGCATCAATTATTGCAGTGCTAGCTATCACTCTTGGCGTTACAAAGCGAACTCACAACTGGTATAAGAATGCCTTGGGAGGCTTCTGGGTGCCTATTTATACTATCAGGGGTATTGTTCAGTTTTGCTGTGAGGAGGAAGAGGACCTGCGTTTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.58

Weight (kDa)

8.66

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	7 - 78	1.2e-08	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29970 AT1G29970
fragaria_vesca	FvH4_3g05751
malus_domestica	MD05G1285200.v1.1 MD10G1263400.v1.1
prunus_persica	Prupe.4G079300_v2.0.a1
pyrus_communis	pycom05g26440 pycom10g21960
rosa_chinensis	RchiOBHm_Chr2g0090401 RchiOBHm_Chr2g0122421 RchiOBHm_Chr5g0013801 RchiOBHm_Chr5g0032921
rosa_laevigata	RLG00000032047
rosa_multiflora	Rmu_ssc0000256.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062850
rosa_samantha	Rh1BG190600 Rh2BG209700 Rh5AG107100 Rh5AG227500 Rh5BG103400 Rh5CG115200 Rh7AG432800
rosa_wichuraiana	Rw5G009340 Rw7G022070 Rw7G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	152, 208
AluBI	AGCT	2 cut(s)	28, 254
AluI	AGCT	2 cut(s)	28, 254
Ama87I	CYCGRG	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	108
ArsI	GACNNNNNNTTYG	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	373
AsuNHI	GCTAGC	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	319
BciT130I	CCWGG	2 cut(s)	154, 210
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	196
BfuAI	ACCTGC	1 cut(s)	384
Bme1390I	CCNGG	2 cut(s)	154, 210
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	154, 210
BmsI	GCATC	2 cut(s)	156, 242
BmtI	GCTAGC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	152, 303
Bse1I	ACTGG	2 cut(s)	15, 293
BseBI	CCWGG	2 cut(s)	154, 210
BseDI	CCNNGG	2 cut(s)	152, 303
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	2 cut(s)	15, 293
BseRI	GAGGAG	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	15, 293
BssECI	CCNNGG	2 cut(s)	152, 303
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	154, 210
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	223, 252
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 251
BstNI	CCWGG	2 cut(s)	154, 210
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	152, 208
BstSFI	CTRYAG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	8, 252
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	223, 252
Cfr13I	GGNCC	1 cut(s)	373
CviAII	CATG	3 cut(s)	17, 63, 222
CviJI	RGCY	5 cut(s)	5, 28, 40, 254, 312
CviKI_1	RGCY	5 cut(s)	5, 28, 40, 254, 312
DdeI	CTNAG	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	152, 208
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	20, 66, 225
FaiI	YATR	8 cut(s)	18, 64, 125, 159, 216, 223, 294, 330
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	3 cut(s)	16, 62, 221
FokI	GGATG	1 cut(s)	134
FspBI	CTAG	1 cut(s)	251
Hin1II	CATG	3 cut(s)	20, 66, 225
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	31, 113
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	221, 225, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 251
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	20, 66, 225
LpnPI	CCDG	7 cut(s)	139, 166, 195, 222, 274, 301, 322
LweI	GCATC	2 cut(s)	156, 242
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	380
MluCI	AATT	2 cut(s)	108, 237
MnlI	CCTC	5 cut(s)	180, 302, 355, 358, 364
MspR9I	CCNGG	2 cut(s)	154, 210
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	154, 210
MwoI	GCNNNNNNNGC	2 cut(s)	11, 251
NheI	GCTAGC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	20, 66, 225
NlaIV	GGNNCC	1 cut(s)	321
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	113
PctI	GAATGC	1 cut(s)	304
PpuMI	RGGWCCY	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	152, 208
PspGI	CCWGG	2 cut(s)	152, 208
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	154, 210
SetI	ASST	4 cut(s)	30, 211, 256, 378
SfaNI	GCATC	2 cut(s)	156, 242
SfcI	CTRYAG	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	108, 237
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	152, 208
StyI	CCWWGG	1 cut(s)	303
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	108, 237
TscAI	CASTG	2 cut(s)	15, 252
TspRI	CASTG	2 cut(s)	15, 252
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	225
XhoI	CTCGAG	1 cut(s)	113
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.