Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Reverse (-)

70923146 .. 70925075

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG503400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTCCTTTCAGGTATCATCAGTACCAGGTGGTGGGGAGAGCTCTCCCAACTGAGAAGGATGAGCATCCCAAGATCTTCCGCATGAAGCTCTGGCACACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTCTTGAGGAAGTTGAAGAAAGTGAAGAAGAGCAATGGACAAATCTTGGCCATCAATGAGATTTTTGAGAAAAATCCAACTACAATCAACAACTATGGTATTTGGCTGCGATACCAGAGTAGGACTGGTTATCACAACATGTACAAGGAGTACAGAAATACAACTCTGAATGGTGCTGTAGAAGACATGTACACTGAGATGGCATCTCGTCACAGGGTGAGGTCTCCGTGCATCCAGATCATCAAGACAGCAACTATCCCAGCAAAACTCTGCAAGAGGGAGAGCACCAAGCAGTTCCATAACTCCAAGATCAAGTTCCCATTGGTGCTCAGGAAGATTAGGCCCCCATCTAGGAAGCTGAAGACAACTTACAAGGCATCCAGGCCCAACATCTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

178

Amino Acids

21.34

Weight (kDa)

10.45

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	7 - 128	6.8e-23	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	515
AdeI	CACNNNGTG	1 cut(s)	352
AfaI	GTAC	5 cut(s)	26, 134, 278, 287, 326
AfiI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
AflIII	ACRYGT	2 cut(s)	273, 321
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	27, 515
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 434, 466
AluBI	AGCT	3 cut(s)	44, 91, 493
AluI	AGCT	3 cut(s)	44, 91, 493
Alw21I	GWGCWC	3 cut(s)	46, 422, 465
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	3 cut(s)	183, 476, 518
ApeKI	GCWGC	1 cut(s)	241
AspS9I	GGNCC	3 cut(s)	109, 477, 519
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	109
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbsI	GAAGAC	2 cut(s)	324, 503
Bbv12I	GWGCWC	3 cut(s)	46, 422, 465
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	3 cut(s)	194, 328, 490
BciT130I	CCWGG	2 cut(s)	29, 517
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	312
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	29, 517
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	109, 477, 519
BmiI	GGNNCC	2 cut(s)	6, 479
BmrFI	CCNGG	2 cut(s)	29, 517
BmsI	GCATC	4 cut(s)	76, 347, 375, 521
BpiI	GAAGAC	2 cut(s)	324, 503
Bpu10I	CCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 129, 486
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	29, 517
BseGI	GGATG	4 cut(s)	67, 67, 366, 512
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	45, 321, 478
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	394
BshFI	GGCC	3 cut(s)	185, 478, 520
BsiHKAI	GWGCWC	3 cut(s)	46, 422, 465
BslI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
BsmAI	GTCTC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	185, 478, 520
Bso31I	GGTCTC	1 cut(s)	363
Bsp1286I	GDGCHC	3 cut(s)	46, 422, 465
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	3 cut(s)	75, 372, 444
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	3 cut(s)	185, 478, 520
BspCNI	CTCAG	3 cut(s)	46, 322, 477
BspLI	GGNNCC	2 cut(s)	6, 479
BspQI	GCTCTTC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	75, 372, 444
Bst2UI	CCWGG	2 cut(s)	29, 517
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	2 cut(s)	276, 324
BstDEI	CTNAG	3 cut(s)	54, 330, 464
BstF5I	GGATG	4 cut(s)	67, 67, 366, 512
BstKTI	GATC	3 cut(s)	78, 375, 447
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	3 cut(s)	75, 372, 444
BstNI	CCWGG	2 cut(s)	29, 517
BstNSI	RCATGY	2 cut(s)	277, 325
BstSCI	CCNGG	2 cut(s)	27, 515
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	228
BstV2I	GAAGAC	2 cut(s)	324, 503
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	185, 478, 520
BtsCI	GGATG	4 cut(s)	67, 67, 366, 512
BtsIMutI	CAGTG	1 cut(s)	327
Cfr13I	GGNCC	3 cut(s)	109, 477, 519
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	5 cut(s)	25, 133, 277, 286, 325
CviAII	CATG	3 cut(s)	85, 274, 322
CviJI	RGCY	8 cut(s)	5, 44, 91, 185, 241, 478, 493, 520
CviKI_1	RGCY	8 cut(s)	5, 44, 91, 185, 241, 478, 493, 520
CviQI	GTAC	5 cut(s)	25, 133, 277, 286, 325
DdeI	CTNAG	3 cut(s)	54, 330, 464
DpnI	GATC	3 cut(s)	77, 374, 446
DpnII	GATC	3 cut(s)	75, 372, 444
DraIII	CACNNNGTG	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	27, 515
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	3 cut(s)	88, 277, 325
FaiI	YATR	6 cut(s)	86, 231, 275, 323, 435, 533
FatI	CATG	3 cut(s)	84, 273, 321
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	4 cut(s)	54, 74, 353, 499
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	1 cut(s)	242
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	3 cut(s)	185, 478, 520
Hin1II	CATG	3 cut(s)	88, 277, 325
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	4 cut(s)	139, 370, 379, 466
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	366, 408
HpyF3I	CTNAG	3 cut(s)	54, 330, 464
Hsp92II	CATG	3 cut(s)	88, 277, 325
Kzo9I	GATC	3 cut(s)	75, 372, 444
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	4 cut(s)	76, 347, 375, 521
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	3 cut(s)	77, 374, 446
MboI	GATC	3 cut(s)	75, 372, 444
MboII	GAAGA	7 cut(s)	70, 163, 172, 175, 329, 481, 508
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	3 cut(s)	46, 422, 465
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	100, 135, 348, 405
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	3 cut(s)	102, 332, 530
Msp20I	TGGCCA	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	29, 517
MvaI	CCWGG	2 cut(s)	29, 517
NdeII	GATC	3 cut(s)	75, 372, 444
NlaIII	CATG	3 cut(s)	88, 277, 325
NlaIV	GGNNCC	2 cut(s)	6, 479
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	2 cut(s)	277, 325
PciI	ACATGT	2 cut(s)	273, 321
PciSI	GCTCTTC	1 cut(s)	158
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
PkrI	GCNGC	1 cut(s)	243
PscI	ACATGT	2 cut(s)	273, 321
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	27, 515
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	2 cut(s)	27, 515
PspN4I	GGNNCC	2 cut(s)	6, 479
PspPI	GGNCC	3 cut(s)	109, 477, 519
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	5 cut(s)	26, 134, 278, 287, 326
RsaNI	GTAC	5 cut(s)	25, 133, 277, 286, 325
RseI	CAYNNNNRTG	3 cut(s)	102, 332, 530
SacI	GAGCTC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	3 cut(s)	75, 372, 444
Sau96I	GGNCC	3 cut(s)	109, 477, 519
ScrFI	CCNGG	2 cut(s)	29, 517
SduI	GDGCHC	3 cut(s)	46, 422, 465
SetI	ASST	7 cut(s)	17, 33, 46, 93, 111, 359, 495
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	4 cut(s)	76, 347, 375, 521
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	3 cut(s)	102, 332, 530
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	2 cut(s)	27, 515
TatI	WGTACW	3 cut(s)	276, 285, 324
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	2 cut(s)	101, 351
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	2 cut(s)	277, 325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.