Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Reverse (-)

30540011 .. 30542709

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTCCTTTCAGGTATCATCAATACCAGGTGGTGGGGAGAGCTCTCCCAACTGAGAAGGATGAGCATCCCAAGATCTTCCGCATGAAGCTCTGGCACACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAAAAGGTGAAGAAGAGCAACGGGCAAATCTTAGCCATTAATGAGATCTTTGAGAAAAATCCAACTACCATCAACAACTACGGAATCTGGCTGCGATACCAGAGTAGGACTGGTTATCACAACATGTACAAGGAGTACAGAAACACCACTCTTAATGGTGCTGTTGAAGACATGTACACTGAGATGGCATCTCGTCACAGGGTGAGGTCTCCGTGCATCCAAATCATCAAGACTGCAACTATCCCAGCAAAACTTTGCAAGAGGGAGAGCACTAAGCAGTTCCACAACTCCAAGATCAAGTTCCCATTGGTGCTCAGGAAGATTAGGCCCCCATCTAGGAAGCTGAAGACAACTTACAAGGCATCCAGGCCAAACATCTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

179

Amino Acids

21.34

Weight (kDa)

10.45

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	33 - 76	1.4e-18	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AciI	CCGC	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	515
AdeI	CACNNNGTG	1 cut(s)	352
AfaI	GTAC	4 cut(s)	134, 278, 287, 326
AfiI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
AflIII	ACRYGT	2 cut(s)	273, 321
AgsI	TTSAA	2 cut(s)	151, 317
AjnI	CCWGG	2 cut(s)	27, 515
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 434, 466
AluBI	AGCT	3 cut(s)	44, 91, 493
AluI	AGCT	3 cut(s)	44, 91, 493
Alw21I	GWGCWC	3 cut(s)	46, 422, 465
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	2 cut(s)	476, 518
ApeKI	GCWGC	1 cut(s)	241
AseI	ATTAAT	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	109, 477
AsuHPI	GGTGA	2 cut(s)	169, 364
AvaII	GGWCC	1 cut(s)	109
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbsI	GAAGAC	2 cut(s)	324, 503
Bbv12I	GWGCWC	3 cut(s)	46, 422, 465
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	3 cut(s)	227, 328, 490
BciT130I	CCWGG	2 cut(s)	29, 517
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	486
BglII	AGATCT	2 cut(s)	75, 195
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	29, 517
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	109, 477
BmiI	GGNNCC	2 cut(s)	6, 479
BmrFI	CCNGG	2 cut(s)	29, 517
BmsI	GCATC	4 cut(s)	76, 347, 375, 521
BpiI	GAAGAC	2 cut(s)	324, 503
Bpu10I	CCTNAGC	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 129, 486
Bse1I	ACTGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	29, 517
BseGI	GGATG	4 cut(s)	67, 67, 366, 512
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
BseMII	CTCAG	3 cut(s)	45, 321, 478
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	394
BshFI	GGCC	2 cut(s)	478, 520
BsiHKAI	GWGCWC	3 cut(s)	46, 422, 465
BslI	CCNNNNNNNGG	3 cut(s)	34, 129, 486
BsmAI	GTCTC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	478, 520
Bso31I	GGTCTC	1 cut(s)	363
Bsp1286I	GDGCHC	3 cut(s)	46, 422, 465
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	3 cut(s)	75, 195, 444
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	478, 520
BspCNI	CTCAG	3 cut(s)	46, 322, 477
BspLI	GGNNCC	2 cut(s)	6, 479
BspQI	GCTCTTC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	363
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	75, 195, 444
Bst2UI	CCWGG	2 cut(s)	29, 517
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	2 cut(s)	276, 324
BstDEI	CTNAG	5 cut(s)	54, 181, 330, 423, 464
BstF5I	GGATG	4 cut(s)	67, 67, 366, 512
BstKTI	GATC	3 cut(s)	78, 198, 447
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	3 cut(s)	75, 195, 444
BstNI	CCWGG	2 cut(s)	29, 517
BstNSI	RCATGY	2 cut(s)	277, 325
BstSCI	CCNGG	2 cut(s)	27, 515
BstV1I	GCAGC	1 cut(s)	228
BstV2I	GAAGAC	2 cut(s)	324, 503
BstX2I	RGATCY	2 cut(s)	75, 195
BstYI	RGATCY	2 cut(s)	75, 195
BsuRI	GGCC	2 cut(s)	478, 520
BtsCI	GGATG	4 cut(s)	67, 67, 366, 512
BtsIMutI	CAGTG	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	109, 477
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	4 cut(s)	133, 277, 286, 325
CviAII	CATG	3 cut(s)	85, 274, 322
CviJI	RGCY	8 cut(s)	5, 44, 91, 185, 241, 478, 493, 520
CviKI_1	RGCY	8 cut(s)	5, 44, 91, 185, 241, 478, 493, 520
CviQI	GTAC	4 cut(s)	133, 277, 286, 325
DdeI	CTNAG	5 cut(s)	54, 181, 330, 423, 464
DpnI	GATC	3 cut(s)	77, 197, 446
DpnII	GATC	3 cut(s)	75, 195, 444
DraIII	CACNNNGTG	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	27, 515
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	3 cut(s)	88, 277, 325
FaiI	YATR	4 cut(s)	86, 275, 323, 533
FatI	CATG	3 cut(s)	84, 273, 321
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	4 cut(s)	54, 74, 353, 499
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	1 cut(s)	242
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	478, 520
Hin1II	CATG	3 cut(s)	88, 277, 325
HinfI	GANTC	1 cut(s)	234
HphI	GGTGA	2 cut(s)	169, 364
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188III	TCNNGA	2 cut(s)	379, 466
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	366, 386, 408
HpyF3I	CTNAG	5 cut(s)	54, 181, 330, 423, 464
Hsp92II	CATG	3 cut(s)	88, 277, 325
Kzo9I	GATC	3 cut(s)	75, 195, 444
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	4 cut(s)	76, 347, 375, 521
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	3 cut(s)	77, 197, 446
MboI	GATC	3 cut(s)	75, 195, 444
MboII	GAAGA	6 cut(s)	70, 172, 175, 329, 481, 508
MflI	RGATCY	2 cut(s)	75, 195
MhlI	GDGCHC	3 cut(s)	46, 422, 465
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	100, 135, 348, 405
MseI	TTAA	2 cut(s)	189, 303
MslI	CAYNNNNRTG	3 cut(s)	102, 332, 530
MspR9I	CCNGG	2 cut(s)	29, 517
MvaI	CCWGG	2 cut(s)	29, 517
NdeII	GATC	3 cut(s)	75, 195, 444
NlaIII	CATG	3 cut(s)	88, 277, 325
NlaIV	GGNNCC	2 cut(s)	6, 479
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	2 cut(s)	277, 325
PciI	ACATGT	2 cut(s)	273, 321
PciSI	GCTCTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
PkrI	GCNGC	1 cut(s)	243
PscI	ACATGT	2 cut(s)	273, 321
PshBI	ATTAAT	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	27, 515
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	2 cut(s)	27, 515
PspN4I	GGNNCC	2 cut(s)	6, 479
PspPI	GGNCC	2 cut(s)	109, 477
PsuI	RGATCY	2 cut(s)	75, 195
RsaI	GTAC	4 cut(s)	134, 278, 287, 326
RsaNI	GTAC	4 cut(s)	133, 277, 286, 325
RseI	CAYNNNNRTG	3 cut(s)	102, 332, 530
SacI	GAGCTC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	189, 303
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	3 cut(s)	75, 195, 444
Sau96I	GGNCC	2 cut(s)	109, 477
ScrFI	CCNGG	2 cut(s)	29, 517
SduI	GDGCHC	3 cut(s)	46, 422, 465
SetI	ASST	8 cut(s)	17, 33, 46, 93, 111, 159, 359, 495
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	4 cut(s)	76, 347, 375, 521
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	3 cut(s)	102, 332, 530
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	2 cut(s)	27, 515
TatI	WGTACW	3 cut(s)	276, 285, 324
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	189, 303
Tru9I	TTAA	2 cut(s)	189, 303
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	3 cut(s)	101, 246, 351
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
VpaK11BI	GGWCC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	189
XceI	RCATGY	2 cut(s)	277, 325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.