Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Reverse (-)

10879173 .. 10880188

Gene Structure 1016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATTATCCCTGAAACTGACAGTTTCTTCTTCCAAGAGCAACCGCAACATCAGCCATTGTATCCCGACGAAGCTCTTTCACCGTCTCTCTTCGGGTTTGATCACTATGATCATTTCTACGAGTCGTTTCTTCCATCTCAAGAAATCTTCCTTCCTAGCCCTAAGACCCGAGTCTTCAACGAGTCACAGGAATTAGATTCCTTCCACACGCCAAAACACCAGAAACTCATTGACTCCAGCTTCCATTTCAACAGTCACGACCCTTTTTCCCCTAGCCCTGAATCTAATTACCTCTTGGATTCTTACATCACAGAAGCTTCCAACATTTCCAAGTTTCAAGCTCCTGATTTCTCATCGACGTTCAAGGTTGGGTGGACTGAACAAGGCGACACCAAGAAGCGAGAGCTATCTGCTCAGAGCATCGCAGCACGAAAGAGGAGAAGAAGAATCACAGAGAAGACTCAAGAGCTGGGAAAACTAATCCCTGGAAGCCAGAAACACAACACTGCCGAAATGTTCAATGCCGCAGCTAAATATGTCAAGTTCTTGCAGGCTCAAATTGAGATTCTCCAACTGAAGCAGACCAAAATGCAGACTCTGGATAGTTCAAAGGTGGGAAGAGAAATGCAGTTTTTGCTTGGTTCTCAAGAAATCCAGGAGAAGCTATCTACAGAAGAAGTGTGTGTGGTTCCAAGGGAAATGGTTCAAGTCCTAAAAGCCGAAGAATGCATCTTGACAAACCCTAAGATTTCTCGAGACATTAACAAATTGTTGTCAACAAATCTGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

264

Amino Acids

30.44

Weight (kDa)

5.94

Isoelectric Point (pI)

69.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	140 - 184	5.5e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 525
AcuI	CTGAAG	1 cut(s)	596
AgsI	TTSAA	7 cut(s)	178, 250, 338, 364, 520, 609, 707
AjnI	CCWGG	2 cut(s)	484, 654
AluBI	AGCT	8 cut(s)	74, 240, 317, 341, 406, 469, 530, 664
AluI	AGCT	8 cut(s)	74, 240, 317, 341, 406, 469, 530, 664
Alw26I	GTCTC	2 cut(s)	90, 750
AlwNI	CAGNNNCTG	1 cut(s)	598
Ama87I	CYCGRG	2 cut(s)	168, 753
ApeKI	GCWGC	2 cut(s)	425, 527
Asp700I	GAANNNNTTC	1 cut(s)	702
AsuHPI	GGTGA	1 cut(s)	72
AvaI	CYCGRG	2 cut(s)	168, 753
BbsI	GAAGAC	2 cut(s)	166, 464
BbvI	GCAGC	2 cut(s)	437, 539
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	486, 656
BciVI	GTATCC	1 cut(s)	72
BclI	TGATCA	2 cut(s)	100, 109
BcoDI	GTCTC	2 cut(s)	90, 750
BfaI	CTAG	2 cut(s)	156, 273
BfmI	CTRYAG	1 cut(s)	669
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	426, 525, 528
BlsI	GCNGC	3 cut(s)	427, 526, 529
Bme1390I	CCNGG	2 cut(s)	486, 656
BmeT110I	CYCGRG	2 cut(s)	168, 753
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	2 cut(s)	486, 656
BmsI	GCATC	2 cut(s)	429, 738
BoxI	GACNNNNGTC	1 cut(s)	170
BpiI	GAAGAC	2 cut(s)	166, 464
BpmI	CTGGAG	1 cut(s)	220
BpuEI	CTTGAG	3 cut(s)	123, 447, 630
BsaJI	CCNNGG	2 cut(s)	484, 692
BseBI	CCWGG	2 cut(s)	486, 656
BseDI	CCNNGG	2 cut(s)	484, 692
BseMII	CTCAG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	437, 539
BseYI	CCCAGC	1 cut(s)	469
BsiHKCI	CYCGRG	2 cut(s)	168, 753
BsmAI	GTCTC	2 cut(s)	90, 750
BsmBI	CGTCTC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	731
BsoBI	CYCGRG	2 cut(s)	168, 753
Bsp143I	GATC	2 cut(s)	100, 109
BspACI	CCGC	2 cut(s)	44, 525
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	690
BssECI	CCNNGG	2 cut(s)	484, 692
BssMI	GATC	2 cut(s)	100, 109
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	2 cut(s)	486, 656
Bst4CI	ACNGT	3 cut(s)	23, 84, 254
Bst6I	CTCTTC	2 cut(s)	95, 613
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	162, 414, 744
BstKTI	GATC	2 cut(s)	103, 112
BstMAI	GTCTC	2 cut(s)	90, 750
BstMBI	GATC	2 cut(s)	100, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 634
BstNI	CCWGG	2 cut(s)	486, 656
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	484, 654
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	437, 539
BstV2I	GAAGAC	2 cut(s)	166, 464
BsuI	GTATCC	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	552
CaiI	CAGNNNCTG	1 cut(s)	598
DdeI	CTNAG	3 cut(s)	162, 414, 744
DpnI	GATC	2 cut(s)	102, 111
DpnII	GATC	2 cut(s)	100, 109
Eam1104I	CTCTTC	2 cut(s)	95, 613
EarI	CTCTTC	2 cut(s)	95, 613
Eco130I	CCWWGG	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	2 cut(s)	168, 753
EcoRII	CCWGG	2 cut(s)	484, 654
EcoT14I	CCWWGG	1 cut(s)	692
EcoT22I	ATGCAT	1 cut(s)	731
ErhI	CCWWGG	1 cut(s)	692
Esp3I	CGTCTC	1 cut(s)	90
FaiI	YATR	2 cut(s)	108, 537
FbaI	TGATCA	2 cut(s)	100, 109
Fnu4HI	GCNGC	3 cut(s)	426, 525, 528
Fsp4HI	GCNGC	3 cut(s)	426, 525, 528
FspBI	CTAG	2 cut(s)	156, 273
GluI	GCNGC	3 cut(s)	426, 525, 528
GsaI	CCCAGC	1 cut(s)	473
GsuI	CTGGAG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HindIII	AAGCTT	1 cut(s)	315
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	375, 777
Hpy188I	TCNGA	2 cut(s)	417, 786
Hpy8I	GTNNAC	2 cut(s)	375, 777
Hpy99I	CGWCG	2 cut(s)	71, 361
HpyAV	CCTTC	2 cut(s)	161, 211
HpyCH4III	ACNGT	3 cut(s)	23, 84, 254
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	550, 592, 628, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 634
HpyF3I	CTNAG	3 cut(s)	162, 414, 744
HpySE526I	ACGT	1 cut(s)	359
Ksp22I	TGATCA	2 cut(s)	100, 109
Kzo9I	GATC	2 cut(s)	100, 109
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	2 cut(s)	437, 539
LweI	GCATC	2 cut(s)	429, 738
MaeI	CTAG	2 cut(s)	156, 273
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	183, 254
MalI	GATC	2 cut(s)	102, 111
MboI	GATC	2 cut(s)	100, 109
MluCI	AATT	5 cut(s)	191, 286, 558, 767, 790
MlyI	GAGTC	6 cut(s)	131, 180, 191, 227, 454, 589
MmeI	TCCRAC	2 cut(s)	345, 595
MnlI	CCTC	2 cut(s)	302, 429
Mph1103I	ATGCAT	1 cut(s)	731
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	1 cut(s)	762
MspR9I	CCNGG	2 cut(s)	486, 656
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	2 cut(s)	486, 656
MwoI	GCNNNNNNNGC	2 cut(s)	52, 634
NdeII	GATC	2 cut(s)	100, 109
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	2 cut(s)	183, 254
NsiI	ATGCAT	1 cut(s)	731
PaeR7I	CTCGAG	1 cut(s)	753
PctI	GAATGC	1 cut(s)	731
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	5 cut(s)	197, 281, 299, 447, 565
PfoI	TCCNGGA	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	427, 526, 529
PleI	GAGTC	6 cut(s)	130, 179, 190, 227, 454, 589
PpsI	GAGTC	6 cut(s)	130, 179, 190, 227, 454, 589
PshAI	GACNNNNGTC	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	484, 654
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	2 cut(s)	484, 654
PspN4I	GGNNCC	1 cut(s)	690
PstNI	CAGNNNCTG	1 cut(s)	598
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	3 cut(s)	426, 525, 528
Sau3AI	GATC	2 cut(s)	100, 109
SchI	GAGTC	6 cut(s)	131, 180, 191, 227, 454, 589
ScrFI	CCNGG	2 cut(s)	486, 656
SfaNI	GCATC	2 cut(s)	429, 738
SfcI	CTRYAG	1 cut(s)	669
Sfr274I	CTCGAG	1 cut(s)	753
SlaI	CTCGAG	1 cut(s)	753
SmlI	CTYRAG	4 cut(s)	138, 462, 645, 753
SmoI	CTYRAG	4 cut(s)	138, 462, 645, 753
Sse9I	AATT	5 cut(s)	191, 286, 558, 767, 790
SsiI	CCGC	2 cut(s)	44, 525
SspMI	CTAG	2 cut(s)	156, 273
StyD4I	CCNGG	2 cut(s)	484, 654
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	3 cut(s)	23, 84, 254
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	2 cut(s)	356, 754
TasI	AATT	5 cut(s)	191, 286, 558, 767, 790
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	5 cut(s)	197, 281, 299, 447, 565
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	183, 254
TseI	GCWGC	2 cut(s)	425, 527
Tsp45I	GTSAC	2 cut(s)	183, 254
TspRI	CASTG	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	753
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	2 cut(s)	156, 273
Zsp2I	ATGCAT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.