Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Forward (+)

14689624 .. 14690879

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCCATGGATTGCTTAAGCTACTTCTTTAACTACGATCCTCCTGTCCAGCTCCAGGATTGCTTTATTCCCGAGATGGATATGATTATCCCTGAAACCGATAGTTTCTTCTTCCAATCTCAACCGCAACTGGAGTTTCATCAGCCATTGTTTCAAGAAGAAGCTCCTTCACAGACCCACTTTGACCCTTTCTGCGACCAGTTTCTTTCTCCGCAAGAAATCTTTCTCCCTAACCCTAAAAACGAAATCTTCAACGAAACACACGACCTCGATTTCTTTCTCCCCACGCCAAAACGCCAGAGACTTGTTAACTCCAGCTACAATTGTAACACTCAAAACCATTTCCAGAGCCGTAACCCGAATTTCTTCGACCCTTTCGGCGACACTGATTTCGTTCCAGAATCTTGTACCTTCCAGGAGTTTCGAGTTCCGGATTTCTCTTTAGCTTTCAAGGTAGGCCGGGGAGATCAAGATGACTCAAAGAAACCGACGCTTTCATCTCAGAGCATCGCGGCTAGAGGGAGGAGAAGAAGAATTGCAGAGAAGACTCACGAGCTCGGAAAACTCATCCCCGGTGGCAATAAACTTAACACCGCCGAGATGTTCCAAGCCGCCGCTAAGTATGTCAAGTTTTTGCAGAGTCAAGTTGGGATTCTCCAACTGATGCAGACCACAAAGAAGGGTAGCTCTAATGTGCAAATGGAAACTCAGTATTTGCTTGAATCGCAAGCAATCCAGGAGAAGTTATCAACAGAGGAAGTGTGTTTGGTACCGTGTGAAATGGTTCAAGATCTAACAACTGAAGAAACCATTTGCAGAACCCCGAATATTTCTCGAGAAATCAACAAGTTACTGTCTAAACATCTGGCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

291

Amino Acids

33.57

Weight (kDa)

5.0

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	769
AccB1I	GGYRCC	1 cut(s)	769
AccII	CGCG	1 cut(s)	512
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	6 cut(s)	125, 212, 512, 594, 612, 615
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	2 cut(s)	409, 771
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflII	CTTAAG	1 cut(s)	16
AgsI	TTSAA	5 cut(s)	155, 253, 451, 722, 788
AjnI	CCWGG	3 cut(s)	54, 414, 735
AluBI	AGCT	7 cut(s)	21, 52, 164, 318, 446, 556, 687
AluI	AGCT	7 cut(s)	21, 52, 164, 318, 446, 556, 687
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	32
Ama87I	CYCGRG	2 cut(s)	71, 834
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
Asp700I	GAANNNNTTC	3 cut(s)	222, 365, 783
Asp718I	GGTACC	1 cut(s)	769
AsuC2I	CCSGG	2 cut(s)	461, 573
AvaI	CYCGRG	2 cut(s)	71, 834
BanI	GGYRCC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	558
BauI	CACGAG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	558
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	3 cut(s)	56, 416, 737
BcnI	CCSGG	2 cut(s)	461, 573
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	516, 874
BfrI	CTTAAG	1 cut(s)	16
BglII	AGATCT	1 cut(s)	790
BisI	GCNGC	3 cut(s)	513, 612, 615
BlsI	GCNGC	3 cut(s)	514, 613, 616
Bme1390I	CCNGG	5 cut(s)	56, 416, 461, 573, 737
BmeT110I	CYCGRG	2 cut(s)	71, 834
BmiI	GGNNCC	1 cut(s)	771
BmrFI	CCNGG	5 cut(s)	56, 416, 461, 573, 737
BmsI	GCATC	2 cut(s)	516, 654
BpiI	GAAGAC	1 cut(s)	551
BpmI	CTGGAG	3 cut(s)	38, 152, 298
BpuMI	CCSGG	2 cut(s)	461, 573
BsaJI	CCNNGG	3 cut(s)	6, 460, 571
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	135, 199
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	3 cut(s)	56, 416, 737
BseDI	CCNNGG	3 cut(s)	6, 460, 571
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	515, 722
BseNI	ACTGG	2 cut(s)	135, 199
BseRI	GAGGAG	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	1 cut(s)	459
BshNI	GGYRCC	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	2 cut(s)	71, 834
BsiSI	CCGG	3 cut(s)	431, 460, 573
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	459
BsoBI	CYCGRG	2 cut(s)	71, 834
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	37, 466, 790
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	6 cut(s)	125, 212, 512, 594, 612, 615
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	2 cut(s)	514, 721
BspEI	TCCGGA	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	1 cut(s)	771
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	769
BspTI	CTTAAG	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	135, 199
BssECI	CCNNGG	3 cut(s)	6, 460, 571
BssMI	GATC	3 cut(s)	37, 466, 790
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	551
Bst2UI	CCWGG	3 cut(s)	56, 416, 737
Bst4CI	ACNGT	2 cut(s)	774, 855
BstAFI	CTTAAG	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	3 cut(s)	501, 618, 708
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	567
BstFNI	CGCG	1 cut(s)	512
BstKTI	GATC	3 cut(s)	40, 469, 793
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	3 cut(s)	37, 466, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	724
BstNI	CCWGG	3 cut(s)	56, 416, 737
BstSCI	CCNGG	5 cut(s)	54, 414, 459, 571, 735
BstUI	CGCG	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	729
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	2 cut(s)	408, 770
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	2 cut(s)	408, 770
DdeI	CTNAG	3 cut(s)	501, 618, 708
DpnI	GATC	3 cut(s)	39, 468, 792
DpnII	GATC	3 cut(s)	37, 466, 790
Ecl136II	GAGCTC	1 cut(s)	556
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	822
Eco88I	CYCGRG	2 cut(s)	71, 834
EcoICRI	GAGCTC	1 cut(s)	556
EcoRII	CCWGG	3 cut(s)	54, 414, 735
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 83, 624
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	513, 612, 615
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	3 cut(s)	513, 612, 615
FspBI	CTAG	2 cut(s)	516, 874
GluI	GCNGC	3 cut(s)	513, 612, 615
GsuI	CTGGAG	3 cut(s)	38, 152, 298
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	3 cut(s)	431, 460, 573
HgaI	GACGC	1 cut(s)	499
Hin1II	CATG	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	6 cut(s)	401, 476, 547, 640, 652, 722
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	3 cut(s)	431, 460, 573
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	504, 560
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	3 cut(s)	177, 421, 673
HpyCH4III	ACNGT	2 cut(s)	774, 855
HpyCH4V	TGCA	5 cut(s)	539, 637, 667, 697, 816
HpyF10VI	GCNNNNNNNGC	1 cut(s)	724
HpyF3I	CTNAG	3 cut(s)	501, 618, 708
Hsp92II	CATG	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	430
KpnI	GGTACC	1 cut(s)	773
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	37, 466, 790
LmnI	GCTCC	2 cut(s)	57, 169
LweI	GCATC	2 cut(s)	516, 654
MaeI	CTAG	2 cut(s)	516, 874
MaeIII	GTNAC	3 cut(s)	326, 353, 849
MalI	GATC	3 cut(s)	39, 468, 792
MboI	GATC	3 cut(s)	37, 466, 790
MboII	GAAGA	9 cut(s)	100, 103, 170, 241, 358, 540, 543, 556, 815
MfeI	CAATTG	1 cut(s)	322
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	3 cut(s)	322, 361, 534
MlyI	GAGTC	3 cut(s)	470, 541, 649
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	5 cut(s)	51, 278, 512, 516, 748
MroI	TCCGGA	1 cut(s)	430
MroXI	GAANNNNTTC	3 cut(s)	222, 365, 783
MseI	TTAA	4 cut(s)	17, 30, 309, 588
MspCI	CTTAAG	1 cut(s)	16
MspI	CCGG	3 cut(s)	431, 460, 573
MspR9I	CCNGG	5 cut(s)	56, 416, 461, 573, 737
MunI	CAATTG	1 cut(s)	322
MvaI	CCWGG	3 cut(s)	56, 416, 737
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	724
NciI	CCSGG	2 cut(s)	461, 573
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	37, 466, 790
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	771
NmeAIII	GCCGAG	1 cut(s)	622
PaeR7I	CTCGAG	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdmI	GAANNNNTTC	3 cut(s)	222, 365, 783
PfeI	GAWTC	3 cut(s)	401, 652, 722
PfoI	TCCNGGA	3 cut(s)	54, 414, 735
PkrI	GCNGC	3 cut(s)	514, 613, 616
PleI	GAGTC	3 cut(s)	470, 541, 648
PpsI	GAGTC	3 cut(s)	470, 541, 648
Psp124BI	GAGCTC	1 cut(s)	558
Psp6I	CCWGG	3 cut(s)	54, 414, 735
PspGI	CCWGG	3 cut(s)	54, 414, 735
PspN4I	GGNNCC	1 cut(s)	771
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	2 cut(s)	409, 771
RsaNI	GTAC	2 cut(s)	408, 770
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	17, 30, 309, 588
SatI	GCNGC	3 cut(s)	513, 612, 615
Sau3AI	GATC	3 cut(s)	37, 466, 790
SchI	GAGTC	3 cut(s)	470, 541, 649
ScrFI	CCNGG	5 cut(s)	56, 416, 461, 573, 737
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	516, 654
Sfr274I	CTCGAG	1 cut(s)	834
SlaI	CTCGAG	1 cut(s)	834
SmlI	CTYRAG	2 cut(s)	16, 834
SmoI	CTYRAG	2 cut(s)	16, 834
Sse9I	AATT	3 cut(s)	322, 361, 534
SsiI	CCGC	6 cut(s)	125, 212, 512, 594, 612, 615
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	2 cut(s)	516, 874
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	5 cut(s)	54, 414, 459, 571, 735
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	774, 855
TaqI	TCGA	4 cut(s)	270, 369, 424, 835
TasI	AATT	3 cut(s)	322, 361, 534
TauI	GCSGC	3 cut(s)	515, 614, 617
TfiI	GAWTC	3 cut(s)	401, 652, 722
Tru1I	TTAA	4 cut(s)	17, 30, 309, 588
Tru9I	TTAA	4 cut(s)	17, 30, 309, 588
TscAI	CASTG	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	128, 486
TspRI	CASTG	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	834
XmnI	GAANNNNTTC	3 cut(s)	222, 365, 783
XspI	CTAG	2 cut(s)	516, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.