Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Forward (+)

5124679 .. 5125666

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G100400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGATGAGTAGTTTTTGCCCTGCAGATGACTGGGGCTCTCTTCAGTTTCTCAACCCAGATATGAATATGGTTAGCTTCCAAGCACAGCAAGAGCAGCTGGCAGCTGCTTCAGGCATCTTGGGTCTGCAGGACTATAGCTTACCTAACCTCCCAGACTACACTACTTGCATTGATCCACTCTTCGAAACCTACGAATCCTCCTCCTCCGAAAACTTTCTCCTCCCCGATTTCTATTTGCCAACAGAAAACATCAACTTATCCTCCTTCCAATCACCAGAAATCTTCCCTAGCCTTGATGAATATGGCTGCTCATATCAGCAGAACCCGAAACGCCAAAAGTTTGGTGTGTGCAGTTTTTTCAATGCATATGATGATCAGTTTCTCCAGCCTCAACTTTTGGCTCCAACTCCAAGTCCTCAAACCCAGATTCCGCAGCAGCCTTCCTATGAATGTGCTAAGATGAACAAGCCCAATGGTGGGGCAGTAACCCTGTCAGCGCAGAGCATTGCGGCGAGGGAGAGGAGGAGGAGGATTACAGAGAAGACTCAAGAGCTCGGAAGGCTCATTCCTGGTGCCACCAAGATGAACACTGCTGAAATGTTGCAAGCTGCTTACAAGTATGTCAAGTTCTTGCAGGCACAAGTTTCAGTTCTCAAGCTCATGACGGATTCCCCAGTTCATCAGGAAAAGAAGGATCTGCAAGCTGTTGCATCTCCAATTGTTCAAGAGAAGCTCTACGCTGAAGAGAAGTGCTTGGTTTCGAAAGAATTTGTTCAAGTCCTCGCAAATGATCACGACATCGAATCGAAACCCTTGCTCAAGGACAGTGTTGCTCAGTTGCTGCAAACCAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

286

Amino Acids

31.95

Weight (kDa)

4.78

Isoelectric Point (pI)

66.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AciI	CCGC	2 cut(s)	431, 509
AclWI	GGATC	2 cut(s)	167, 702
AcsI	RAATTY	1 cut(s)	767
AcuI	CTGAAG	3 cut(s)	26, 93, 762
AfiI	CCNNNNNNNGG	2 cut(s)	476, 477
AgsI	TTSAA	3 cut(s)	361, 725, 776
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	9 cut(s)	75, 97, 104, 138, 553, 608, 658, 704, 733
AluI	AGCT	9 cut(s)	75, 97, 104, 138, 553, 608, 658, 704, 733
Alw21I	GWGCWC	1 cut(s)	555
AlwI	GGATC	2 cut(s)	167, 702
AlwNI	CAGNNNCTG	1 cut(s)	841
ApeKI	GCWGC	8 cut(s)	94, 101, 104, 306, 433, 436, 608, 841
ApoI	RAATTY	1 cut(s)	767
Asp700I	GAANNNNTTC	2 cut(s)	213, 771
AspLEI	GCGC	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	264
AsuII	TTCGAA	2 cut(s)	183, 761
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	2 cut(s)	38, 555
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	8 cut(s)	91, 106, 113, 293, 445, 448, 595, 828
BcgI	CGANNNNNNTGC	2 cut(s)	796, 830
BciT130I	CCWGG	1 cut(s)	570
BclI	TGATCA	2 cut(s)	373, 790
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	3 cut(s)	21, 125, 133
BisI	GCNGC	9 cut(s)	95, 102, 105, 307, 434, 437, 510, 609, 842
BlsI	GCNGC	9 cut(s)	96, 103, 106, 308, 435, 438, 511, 610, 843
Bme1390I	CCNGG	1 cut(s)	570
BmiI	GGNNCC	2 cut(s)	402, 574
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	2 cut(s)	40, 668
BmsI	GCATC	2 cut(s)	123, 719
BmuI	ACTGGG	2 cut(s)	40, 668
BpiI	GAAGAC	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	368
Bpu14I	TTCGAA	2 cut(s)	183, 761
BpuEI	CTTGAG	3 cut(s)	531, 638, 803
BsaXI	ACNNNNNCTCC	6 cut(s)	132, 162, 182, 212, 245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 477
Bse1I	ACTGG	2 cut(s)	35, 674
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	476, 477
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	848
BseNI	ACTGG	2 cut(s)	35, 674
BseRI	GAGGAG	6 cut(s)	190, 193, 209, 535, 538, 541
BseXI	GCAGC	8 cut(s)	91, 106, 113, 293, 445, 448, 595, 828
BsgI	GTGCAG	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	476, 477
Bsp119I	TTCGAA	2 cut(s)	183, 761
Bsp1286I	GDGCHC	2 cut(s)	38, 555
Bsp143I	GATC	4 cut(s)	172, 373, 694, 790
BspACI	CCGC	2 cut(s)	431, 509
BspCNI	CTCAG	1 cut(s)	847
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	402, 574
BspMAI	CTGCAG	2 cut(s)	25, 129
BspPI	GGATC	2 cut(s)	167, 702
BspT104I	TTCGAA	2 cut(s)	183, 761
BspT107I	GGYRCC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	35, 674
BssMI	GATC	4 cut(s)	172, 373, 694, 790
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	827
Bst6I	CTCTTC	3 cut(s)	45, 185, 738
BstBI	TTCGAA	2 cut(s)	183, 761
BstC8I	GCNNGC	4 cut(s)	99, 606, 636, 702
BstDEI	CTNAG	2 cut(s)	456, 834
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	4 cut(s)	175, 376, 697, 793
BstMBI	GATC	4 cut(s)	172, 373, 694, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 559
BstNI	CCWGG	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	3 cut(s)	21, 125, 133
BstV1I	GCAGC	8 cut(s)	91, 106, 113, 293, 445, 448, 595, 828
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	694
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	694
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	588, 832
Cac8I	GCNNGC	4 cut(s)	99, 606, 636, 702
CaiI	CAGNNNCTG	1 cut(s)	841
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	499
CviAII	CATG	1 cut(s)	661
DdeI	CTNAG	2 cut(s)	456, 834
DpnI	GATC	4 cut(s)	174, 375, 696, 792
DpnII	GATC	4 cut(s)	172, 373, 694, 790
Eam1104I	CTCTTC	3 cut(s)	45, 185, 738
EarI	CTCTTC	3 cut(s)	45, 185, 738
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	38, 555
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	3 cut(s)	26, 93, 762
EcoICRI	GAGCTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	2 cut(s)	38, 555
FaeI	CATG	1 cut(s)	664
FatI	CATG	1 cut(s)	660
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	2 cut(s)	373, 790
Fnu4HI	GCNGC	9 cut(s)	95, 102, 105, 307, 434, 437, 510, 609, 842
FriOI	GRGCYC	2 cut(s)	38, 555
Fsp4HI	GCNGC	9 cut(s)	95, 102, 105, 307, 434, 437, 510, 609, 842
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	9 cut(s)	95, 102, 105, 307, 434, 437, 510, 609, 842
GsuI	CTGGAG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	1 cut(s)	664
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	5 cut(s)	194, 427, 544, 668, 803
HphI	GGTGA	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	208, 557
Hpy188III	TCNNGA	5 cut(s)	548, 661, 683, 725, 794
HpyAV	CCTTC	4 cut(s)	274, 450, 552, 685
HpyCH4III	ACNGT	1 cut(s)	827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 559
HpyF3I	CTNAG	2 cut(s)	456, 834
Hsp92II	CATG	1 cut(s)	664
HspAI	GCGC	1 cut(s)	497
Ksp22I	TGATCA	2 cut(s)	373, 790
Kzo9I	GATC	4 cut(s)	172, 373, 694, 790
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	8 cut(s)	91, 106, 113, 293, 445, 448, 595, 828
LweI	GCATC	2 cut(s)	123, 719
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	4 cut(s)	174, 375, 696, 792
MboI	GATC	4 cut(s)	172, 373, 694, 790
MboII	GAAGA	5 cut(s)	32, 172, 274, 553, 755
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	2 cut(s)	38, 555
MluCI	AATT	2 cut(s)	717, 767
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	367
MroXI	GAANNNNTTC	2 cut(s)	213, 771
MslI	CAYNNNNRTG	1 cut(s)	581
MspA1I	CMGCKG	2 cut(s)	97, 104
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	94, 559
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	4 cut(s)	172, 373, 694, 790
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	2 cut(s)	402, 574
NsiI	ATGCAT	1 cut(s)	367
NspV	TTCGAA	2 cut(s)	183, 761
PagI	TCATGA	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	213, 771
PfeI	GAWTC	4 cut(s)	194, 427, 668, 803
PkrI	GCNGC	9 cut(s)	96, 103, 106, 308, 435, 438, 511, 610, 843
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	402, 574
PsrI	GAACNNNNNNTAC	2 cut(s)	611, 643
PstI	CTGCAG	2 cut(s)	25, 129
PstNI	CAGNNNCTG	1 cut(s)	841
PsuI	RGATCY	1 cut(s)	694
PvuII	CAGCTG	2 cut(s)	97, 104
RseI	CAYNNNNRTG	1 cut(s)	581
SacI	GAGCTC	1 cut(s)	555
SatI	GCNGC	9 cut(s)	95, 102, 105, 307, 434, 437, 510, 609, 842
Sau3AI	GATC	4 cut(s)	172, 373, 694, 790
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	2 cut(s)	38, 555
SfaNI	GCATC	2 cut(s)	123, 719
SfcI	CTRYAG	3 cut(s)	21, 125, 133
SfuI	TTCGAA	2 cut(s)	183, 761
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	3 cut(s)	546, 653, 818
SmoI	CTYRAG	3 cut(s)	546, 653, 818
Sse9I	AATT	2 cut(s)	717, 767
SsiI	CCGC	2 cut(s)	431, 509
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	1 cut(s)	827
TaqI	TCGA	4 cut(s)	183, 761, 801, 806
TasI	AATT	2 cut(s)	717, 767
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	4 cut(s)	194, 427, 668, 803
TscAI	CASTG	2 cut(s)	595, 832
TseI	GCWGC	8 cut(s)	94, 101, 104, 306, 433, 436, 608, 841
TspDTI	ATGAA	6 cut(s)	77, 312, 462, 476, 599, 668
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	2 cut(s)	595, 832
XapI	RAATTY	1 cut(s)	767
XmnI	GAANNNNTTC	2 cut(s)	213, 771
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.