Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Reverse (-)

36272402 .. 36273851

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1228800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCCTTGAGTCCATTGCCTCCTCAGGCTTTCGACTCAGAGATGACGATCACTAATTGTTTCCAACAAAACTTGGAAGCAGAGCTCTTAACAGCAGACTTCCTTCAATATTATTATTATTCCGAGTATAATATTAATTCCAACTTTTCCAACAGCTTTGTTGATGAATATCATTCATGGTATGACCCCTACGATCTTCTAAACCTTGAAAATCATGATCATGATACTACTACTGATGATCATCTTCTTCTCCCACATAATAGTTTCTCTCTCACTGCCCCTGATTTCAATCCCTACCCCAACCCGAAACGCCAAAAATGTTTCCAAGATTGCTTCTACCCGGATTTTACTCTTTCTAATGGGTTTGTTCCAAATTTGTGTCCGCTACCCTCGTTGATGCCTGTCCCCAAGTTTTTTGCTACTCCACTTCCCAAATACGATCAACTTCCGGAGGATATAACTAATAGCGCAGGAGCAAACATTGATCATGGACACGAGAGTATAACTAATGTTGCTAATAAGAAAAAAGTGGGTGAAAAATGTGTGTCAGCTCAGAGTATAGCGGCTAGAGAAAGGAGGAGGAAGATCACAGAGAAGACTCAAGCGCTAGGGAAGCTTGTTCCTGGAGGAAGTAAGATGAACACAGCTGAGATGCTCACTGCTGCTTACAACTATGTCAAGTACTTGCAGGCCCAAGTTGGGATTCTTCAACTCATGGGGTCATTCAAGGAATTGAAAGAAGCTCCTCCCATTGAAGAGCTGCAAGTAGTTGCATCTCCTGTTCTTCAAGAGAAGCTATATTTGGAGAATAACTGCCTGGTCCCAAAGAAGTTTGTGGCGATACTAGCAGAACACTTTGATGCTCAATCAAAGCCTTCACTCTCCAACAATCTCAACCTACTGCTCACATCTACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

307

Amino Acids

34.53

Weight (kDa)

5.18

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	186 - 230	5.7e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	2 cut(s)	383, 563
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	1 cut(s)	683
AfeI	AGCGCT	1 cut(s)	606
AfiI	CCNNNNNNNGG	1 cut(s)	699
AgsI	TTSAA	8 cut(s)	107, 209, 289, 710, 727, 736, 755, 788
AjnI	CCWGG	2 cut(s)	622, 816
AjuI	GAANNNNNNNTTGG	4 cut(s)	687, 719, 785, 817
AluBI	AGCT	8 cut(s)	85, 156, 551, 616, 647, 743, 760, 796
AluI	AGCT	8 cut(s)	85, 156, 551, 616, 647, 743, 760, 796
Alw21I	GWGCWC	1 cut(s)	87
Aor13HI	TCCGGA	1 cut(s)	448
Aor51HI	AGCGCT	1 cut(s)	606
AoxI	GGCC	2 cut(s)	3, 690
ApeKI	GCWGC	2 cut(s)	662, 760
ApoI	RAATTY	1 cut(s)	373
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	470, 607
AspS9I	GGNCC	2 cut(s)	691, 820
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	820
AxyI	CCTNAGG	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	649, 747
BciT130I	CCWGG	2 cut(s)	624, 818
BclI	TGATCA	3 cut(s)	217, 238, 484
BcnI	CCSGG	1 cut(s)	341
BfaI	CTAG	3 cut(s)	567, 608, 845
BfoI	RGCGCY	1 cut(s)	608
BisI	GCNGC	3 cut(s)	564, 663, 761
BlsI	GCNGC	3 cut(s)	565, 664, 762
BmcAI	AGTACT	1 cut(s)	683
Bme1390I	CCNGG	3 cut(s)	341, 624, 818
Bme18I	GGWCC	1 cut(s)	820
BmgT120I	GGNCC	2 cut(s)	691, 820
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	3 cut(s)	341, 624, 818
BmsI	GCATC	4 cut(s)	387, 642, 782, 850
BpiI	GAAGAC	1 cut(s)	602
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	28, 585
BpuMI	CCSGG	1 cut(s)	341
BsaBI	GATNNNNATC	4 cut(s)	47, 168, 240, 288
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	4 cut(s)	47, 168, 240, 288
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	624, 818
BseJI	GATNNNNATC	4 cut(s)	47, 168, 240, 288
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	4 cut(s)	38, 51, 566, 639
BseRI	GAGGAG	3 cut(s)	12, 592, 735
BseXI	GCAGC	2 cut(s)	649, 747
BshFI	GGCC	2 cut(s)	5, 692
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	341, 449
BslFI	GGGAC	2 cut(s)	389, 806
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmFI	GGGAC	2 cut(s)	389, 806
BsnI	GGCC	2 cut(s)	5, 692
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	7 cut(s)	48, 193, 217, 238, 439, 484, 585
BspACI	CCGC	2 cut(s)	383, 563
BspANI	GGCC	2 cut(s)	5, 692
BspCNI	CTCAG	4 cut(s)	37, 50, 565, 640
BspEI	TCCGGA	1 cut(s)	448
BspHI	TCATGA	2 cut(s)	214, 220
BspLI	GGNNCC	1 cut(s)	822
BspQI	GCTCTTC	1 cut(s)	750
BsrDI	GCAATG	1 cut(s)	14
BssMI	GATC	7 cut(s)	48, 193, 217, 238, 439, 484, 585
BssSI	CACGAG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	624, 818
Bst6I	CTCTTC	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	4 cut(s)	24, 37, 552, 648
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	470, 607
BstKTI	GATC	7 cut(s)	51, 196, 220, 241, 442, 487, 588
BstMBI	GATC	7 cut(s)	48, 193, 217, 238, 439, 484, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	613, 845
BstNI	CCWGG	2 cut(s)	624, 818
BstSCI	CCNGG	3 cut(s)	339, 622, 816
BstV1I	GCAGC	2 cut(s)	649, 747
BstV2I	GAAGAC	1 cut(s)	602
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	5, 692
BtsI	GCAGTG	2 cut(s)	273, 657
BtsIMutI	CAGTG	2 cut(s)	273, 657
Cac8I	GCNNGC	1 cut(s)	690
CciI	TCATGA	2 cut(s)	214, 220
CfoI	GCGC	2 cut(s)	470, 607
Cfr13I	GGNCC	2 cut(s)	691, 820
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	5 cut(s)	177, 215, 221, 488, 715
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	4 cut(s)	24, 37, 552, 648
DpnI	GATC	7 cut(s)	50, 195, 219, 240, 441, 486, 587
DpnII	GATC	7 cut(s)	48, 193, 217, 238, 439, 484, 585
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	820
Eco47III	AGCGCT	1 cut(s)	606
Eco53kI	GAGCTC	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	622, 816
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	5 cut(s)	180, 218, 224, 491, 718
FaqI	GGGAC	2 cut(s)	389, 806
FatI	CATG	5 cut(s)	176, 214, 220, 487, 714
FbaI	TGATCA	3 cut(s)	217, 238, 484
Fnu4HI	GCNGC	3 cut(s)	564, 663, 761
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	564, 663, 761
FspBI	CTAG	3 cut(s)	567, 608, 845
GlaI	GCGC	2 cut(s)	469, 606
GluI	GCNGC	3 cut(s)	564, 663, 761
GsuI	CTGGAG	1 cut(s)	645
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	5, 692
HapII	CCGG	2 cut(s)	341, 449
HhaI	GCGC	2 cut(s)	470, 607
Hin1II	CATG	5 cut(s)	180, 218, 224, 491, 718
Hin6I	GCGC	2 cut(s)	468, 605
HinP1I	GCGC	2 cut(s)	468, 605
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	4 cut(s)	10, 35, 598, 703
HpaII	CCGG	2 cut(s)	341, 449
HphI	GGTGA	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	40, 124, 555
Hpy188III	TCNNGA	4 cut(s)	215, 221, 449, 788
HpyAV	CCTTC	2 cut(s)	113, 885
HpyCH4V	TGCA	3 cut(s)	688, 763, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	613, 845
HpyF3I	CTNAG	4 cut(s)	24, 37, 552, 648
Hsp92II	CATG	5 cut(s)	180, 218, 224, 491, 718
HspAI	GCGC	2 cut(s)	468, 605
Kpn2I	TCCGGA	1 cut(s)	448
Ksp22I	TGATCA	3 cut(s)	217, 238, 484
Kzo9I	GATC	7 cut(s)	48, 193, 217, 238, 439, 484, 585
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	2 cut(s)	473, 748
Lsp1109I	GCAGC	2 cut(s)	649, 747
LweI	GCATC	4 cut(s)	387, 642, 782, 850
MaeI	CTAG	3 cut(s)	567, 608, 845
MalI	GATC	7 cut(s)	50, 195, 219, 240, 441, 486, 587
MboI	GATC	7 cut(s)	48, 193, 217, 238, 439, 484, 585
MboII	GAAGA	8 cut(s)	188, 236, 239, 595, 607, 698, 767, 776
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	4 cut(s)	55, 136, 373, 731
MlyI	GAGTC	3 cut(s)	19, 29, 592
MmeI	TCCRAC	4 cut(s)	88, 165, 174, 909
MnlI	CCTC	8 cut(s)	30, 33, 400, 445, 570, 573, 620, 756
MroI	TCCGGA	1 cut(s)	448
MseI	TTAA	2 cut(s)	89, 135
MslI	CAYNNNNRTG	2 cut(s)	219, 858
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	2 cut(s)	341, 449
MspR9I	CCNGG	3 cut(s)	341, 624, 818
MvaI	CCWGG	2 cut(s)	624, 818
MwoI	GCNNNNNNNGC	2 cut(s)	613, 845
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	7 cut(s)	48, 193, 217, 238, 439, 484, 585
NlaIII	CATG	5 cut(s)	180, 218, 224, 491, 718
NlaIV	GGNNCC	1 cut(s)	822
PagI	TCATGA	2 cut(s)	214, 220
PciSI	GCTCTTC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	703
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	565, 664, 762
PleI	GAGTC	3 cut(s)	18, 29, 592
PpsI	GAGTC	3 cut(s)	18, 29, 592
PshBI	ATTAAT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	622, 816
PspGI	CCWGG	2 cut(s)	622, 816
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	2 cut(s)	691, 820
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	2 cut(s)	219, 858
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	2 cut(s)	89, 135
SatI	GCNGC	3 cut(s)	564, 663, 761
Sau3AI	GATC	7 cut(s)	48, 193, 217, 238, 439, 484, 585
Sau96I	GGNCC	2 cut(s)	691, 820
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	3 cut(s)	19, 29, 592
ScrFI	CCNGG	3 cut(s)	341, 624, 818
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	4 cut(s)	387, 642, 782, 850
SinI	GGWCC	1 cut(s)	820
SmiMI	CAYNNNNRTG	2 cut(s)	219, 858
SmlI	CTYRAG	2 cut(s)	7, 600
SmoI	CTYRAG	2 cut(s)	7, 600
Sse9I	AATT	4 cut(s)	55, 136, 373, 731
SsiI	CCGC	2 cut(s)	383, 563
SspI	AATATT	2 cut(s)	110, 133
SspMI	CTAG	3 cut(s)	567, 608, 845
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	339, 622, 816
TaqI	TCGA	1 cut(s)	33
TasI	AATT	4 cut(s)	55, 136, 373, 731
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	2 cut(s)	89, 135
Tru9I	TTAA	2 cut(s)	89, 135
TscAI	CASTG	2 cut(s)	280, 664
TseI	GCWGC	2 cut(s)	662, 760
TspDTI	ATGAA	3 cut(s)	165, 180, 653
TspRI	CASTG	2 cut(s)	280, 664
VpaK11BI	GGWCC	1 cut(s)	820
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	3 cut(s)	567, 608, 845
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.