Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Reverse (-)

6591789 .. 6593300

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACTGCTATGAGTACTACATTTTGCTCAGACTGGGGGTCTCTTCAGCTTCTCAATAACAACCCCAACCCTAACCCAGATTATGATCAAATGTTTAGCTTCCAGACCCAACAGGATGAGCTGGCAGCAGCAAGTATCTTGGGTCTGGACTACAGCATAGCTAGCTCTCTTGACGATCCAAACCCACTACTTCTCTCCCAATCATTTTTCAGTGACCAAGATTTCCTTCTTGACGATCATGAATACTATTATCATGATGAGTACCCAAAACGCCAGAAAACCCAACAGCAATTCCATCCCAGCTTCAATGGGTTTGTCCCAAATCCAAGTTTCATCCCGGAGTTGGTGCGGCCTCAACTACCTCTGCCCCCTCCTGAATTTCAGATTCAACAGCAGCCAGCAGCCCAATTGTATGCTAATTATAGACTAAGCAATGAGGTTATTAGTACCGAGCCGAAAATGAAGGCCAACAGTAATGGAGGAGTGAGCTTGTCTCCACAGAGCATTGCGGCACGCGAGAGGAGGAGGAGGATAACAGAGAAGACTAATGAGCTTGGGAAGCTGGTTCCCTGCGGGAGCAAGATGAATACTGCTGAAATGTTCCAAGCTGCTTATAAGTACATCAAATTCTTGCAGGCACAAGTTGCGATGCTCAAACTCATGGATTCAGTGAAGGCAAATAAAGGCCATGGGTTGCATAATCAGGAAGGTCTCCAAGTTCTTGCATCCCCAATTGTTCAGGAGAAGTTGTACTCGGAAGAAAAGTGCTTGGTTTCAAGAGAATTTGTTGAAACCCTAGCAAATAATCAAGATTTCCAGTCGAAGCCATTGCTCAAGGACAACATTGCTAAGTTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

287

Amino Acids

32.43

Weight (kDa)

5.44

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	171 - 212	8.7e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	349, 509, 573
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	3 cut(s)	377, 626, 782
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	5 cut(s)	16, 263, 448, 620, 752
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	4 cut(s)	307, 389, 777, 791
AhdI	GACNNNNNGTC	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
Alw26I	GTCTC	3 cut(s)	45, 498, 716
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	350, 465, 685
ApeKI	GCWGC	5 cut(s)	125, 128, 394, 401, 608
ApoI	RAATTY	3 cut(s)	377, 626, 782
AsuC2I	CCSGG	1 cut(s)	338
AsuNHI	GCTAGC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	5 cut(s)	137, 140, 406, 413, 595
BccI	CCATC	1 cut(s)	303
BcgI	CGANNNNNNTGC	2 cut(s)	811, 845
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	45, 498, 716
BfaI	CTAG	2 cut(s)	162, 797
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	7 cut(s)	126, 129, 350, 395, 402, 510, 609
BlsI	GCNGC	7 cut(s)	127, 130, 351, 396, 403, 511, 610
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	338
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	2 cut(s)	639, 734
BmtI	GCTAGC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
BpuEI	CTTGAG	1 cut(s)	818
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	84
BsaI	GGTCTC	2 cut(s)	45, 716
BsaJI	CCNNGG	1 cut(s)	688
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	38, 817
Bse3DI	GCAATG	4 cut(s)	439, 504, 827, 843
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	4 cut(s)	121, 295, 333, 725
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	4 cut(s)	439, 504, 827, 843
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	38, 817
BseRI	GAGGAG	4 cut(s)	495, 535, 538, 541
BseXI	GCAGC	5 cut(s)	137, 140, 406, 413, 595
BseYI	CCCAGC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	352, 467, 687
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	3 cut(s)	45, 498, 716
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	352, 467, 687
Bso31I	GGTCTC	2 cut(s)	45, 716
Bsp143I	GATC	3 cut(s)	85, 175, 235
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	3 cut(s)	349, 509, 573
BspANI	GGCC	3 cut(s)	352, 467, 687
BspCNI	CTCAG	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	2 cut(s)	238, 253
BspLI	GGNNCC	1 cut(s)	567
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	170
BspTNI	GGTCTC	2 cut(s)	45, 716
BsrDI	GCAATG	4 cut(s)	439, 504, 827, 843
BsrI	ACTGG	2 cut(s)	38, 817
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	3 cut(s)	85, 175, 235
BssT1I	CCWWGG	1 cut(s)	688
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	5 cut(s)	123, 163, 399, 514, 636
BstDEI	CTNAG	3 cut(s)	28, 428, 849
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	4 cut(s)	121, 295, 333, 725
BstFNI	CGCG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	88, 178, 238
BstMAI	GTCTC	3 cut(s)	45, 498, 716
BstMBI	GATC	3 cut(s)	85, 175, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 559, 644
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	5 cut(s)	137, 140, 406, 413, 595
BstV2I	GAAGAC	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	352, 467, 687
BtgI	CCRYGG	1 cut(s)	688
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	4 cut(s)	121, 295, 333, 725
BtsIMutI	CAGTG	2 cut(s)	217, 675
Cac8I	GCNNGC	5 cut(s)	123, 163, 399, 514, 636
CciI	TCATGA	2 cut(s)	238, 253
Csp6I	GTAC	5 cut(s)	15, 262, 447, 619, 751
CviAII	CATG	4 cut(s)	239, 254, 661, 689
CviQI	GTAC	5 cut(s)	15, 262, 447, 619, 751
DdeI	CTNAG	3 cut(s)	28, 428, 849
DpnI	GATC	3 cut(s)	87, 177, 237
DpnII	GATC	3 cut(s)	85, 175, 235
DriI	GACNNNNNGTC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	48
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	688
Eco31I	GGTCTC	2 cut(s)	45, 716
Eco57I	CTGAAG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	688
FaeI	CATG	4 cut(s)	242, 257, 664, 692
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	4 cut(s)	238, 253, 660, 688
FauI	CCCGC	1 cut(s)	566
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	7 cut(s)	126, 129, 350, 395, 402, 510, 609
FokI	GGATG	4 cut(s)	128, 282, 320, 712
Fsp4HI	GCNGC	7 cut(s)	126, 129, 350, 395, 402, 510, 609
FspBI	CTAG	2 cut(s)	162, 797
GluI	GCNGC	7 cut(s)	126, 129, 350, 395, 402, 510, 609
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	352, 467, 687
HapII	CCGG	1 cut(s)	338
Hin1II	CATG	4 cut(s)	242, 257, 664, 692
HinfI	GANTC	2 cut(s)	385, 665
HpaII	CCGG	1 cut(s)	338
Hpy188I	TCNGA	4 cut(s)	31, 384, 757, 860
HpyAV	CCTTC	4 cut(s)	236, 457, 667, 701
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4V	TGCA	3 cut(s)	634, 697, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 559, 644
HpyF3I	CTNAG	3 cut(s)	28, 428, 849
Hsp92II	CATG	4 cut(s)	242, 257, 664, 692
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	85, 175, 235
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	5 cut(s)	137, 140, 406, 413, 595
LweI	GCATC	2 cut(s)	639, 734
MaeI	CTAG	2 cut(s)	162, 797
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	3 cut(s)	87, 177, 237
MboI	GATC	3 cut(s)	85, 175, 235
MboII	GAAGA	3 cut(s)	35, 553, 770
MfeI	CAATTG	2 cut(s)	407, 732
MluCI	AATT	7 cut(s)	290, 377, 407, 418, 626, 732, 782
MnlI	CCTC	9 cut(s)	363, 372, 381, 430, 473, 513, 516, 519, 522
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	2 cut(s)	407, 732
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	162, 559, 644
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	3 cut(s)	85, 175, 235
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	242, 257, 664, 692
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	212
PagI	TCATGA	2 cut(s)	238, 253
PfeI	GAWTC	2 cut(s)	385, 665
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	7 cut(s)	127, 130, 351, 396, 403, 511, 610
PsiI	TTATAA	1 cut(s)	615
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	567
RsaI	GTAC	5 cut(s)	16, 263, 448, 620, 752
RsaNI	GTAC	5 cut(s)	15, 262, 447, 619, 751
SatI	GCNGC	7 cut(s)	126, 129, 350, 395, 402, 510, 609
Sau3AI	GATC	3 cut(s)	85, 175, 235
ScaI	AGTACT	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	338
SfaNI	GCATC	2 cut(s)	639, 734
SfcI	CTRYAG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	7 cut(s)	290, 377, 407, 418, 626, 732, 782
SsiI	CCGC	3 cut(s)	349, 509, 573
SspMI	CTAG	2 cut(s)	162, 797
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	821
TasI	AATT	7 cut(s)	290, 377, 407, 418, 626, 732, 782
TatI	WGTACW	3 cut(s)	14, 618, 750
TauI	GCSGC	2 cut(s)	352, 512
TfiI	GAWTC	2 cut(s)	385, 665
TscAI	CASTG	2 cut(s)	217, 675
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	5 cut(s)	125, 128, 394, 401, 608
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	255, 322, 476, 599
TspRI	CASTG	2 cut(s)	217, 675
XapI	RAATTY	3 cut(s)	377, 626, 782
XspI	CTAG	2 cut(s)	162, 797
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.