Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Reverse (-)

33799243 .. 33800312

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1243500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTATGAGTACTGCTACTTTTTGCTCTACTGATGACTGGGGGTCTGTTCAGCTTCTCAACCCACCAGAAATGAATATGCTTAGCTTCCCATCACAACAAGAGCTGCAGGCAGCTTCGTCGGGCATTTTCGGTCTGCAGGATTACTGCTATAGCTTAGCTAACATTAATCCAGACTACACCTGCATTGATCCACTCTTCCAGCCATACAAGTCCTCCGAAAACTTTTTCCTCCCCGATTTTTGTTCTCCCACAGATAACATCAATTTAGCCTCACTGTCGCCGGATATCTGTCCAACCCTAGATGAATATGACTACTCCTACCAGCCCTACCCAAAACGCCAAAAGCTCTTCCATGATCAGCAAGTCCAATATTACAATTCAAACTTCCCGATCGCCACTCCCAATTATTTCAATGCATATGATCAGTTCCTCCAGCCTGAAATTTTGGTTCCAACTCCTGAAATCCGAATTCAGAATCCACCTGCGGTTGCCAAGCTTAACAATAAGGCCGTCAGTGGTACTGGTACAGTGTCACCGCAGAGCATAGCTGCGCGCGAGAGGAGGAGGAGGATAACGGATAAGACTCAGGAGCTTGGGAGGTTGATTCCTGGTGCCACAAAGATGAACACTGCTGAAATGTTGCAAGCTGCGTACAAGTATGTCAAGTTCTTGCGGGCACAAGTTTCAGTTCTCAAACTCATGACGGACTCTCCAATTCAGCAGGAAAGGAAGGAAGAAGGGTTGCATATTAATCAAGAGAGTCTCCAAGTTGTTGCCTCCCCAATTGTTCAAGAGAAGCTCTACTCTGAAGAGAAGTGCTTAGTTTTGAAGGAGTTTGTTGAAGTGCTGGCAAAAGATGATGACATCCAATCCAAACCCTTGCTCAGAGACAAAGTTGCTGAGTTGCTGCAAACCAACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

309

Amino Acids

34.89

Weight (kDa)

4.91

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	185 - 226	7.6e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	191, 493
Acc36I	ACCTGC	2 cut(s)	191, 493
AccB1I	GGYRCC	1 cut(s)	614
AccII	CGCG	2 cut(s)	556, 558
AciI	CCGC	3 cut(s)	488, 539, 676
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	444, 471
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	4 cut(s)	13, 523, 529, 656
AgsI	TTSAA	5 cut(s)	384, 415, 794, 832, 845
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	770, 885
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	5 cut(s)	106, 113, 551, 650, 910
ApoI	RAATTY	2 cut(s)	444, 471
AseI	ATTAAT	2 cut(s)	168, 753
AspLEI	GCGC	2 cut(s)	556, 558
AsuHPI	GGTGA	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	614
BbvI	GCAGC	5 cut(s)	93, 125, 538, 637, 897
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	2 cut(s)	358, 424
BcoDI	GTCTC	2 cut(s)	770, 885
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	3 cut(s)	107, 137, 151
BfuAI	ACCTGC	2 cut(s)	191, 493
BisI	GCNGC	5 cut(s)	107, 114, 552, 651, 911
BlpI	GCTNAGC	2 cut(s)	83, 157
BlsI	GCNGC	5 cut(s)	108, 115, 553, 652, 912
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	612
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	453, 616
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	419
Bpu1102I	GCTNAGC	2 cut(s)	83, 157
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 697, 727
Bse1I	ACTGG	2 cut(s)	44, 529
BseBI	CCWGG	1 cut(s)	612
BseGI	GGATG	1 cut(s)	867
BseMII	CTCAG	3 cut(s)	602, 894, 901
BseNI	ACTGG	2 cut(s)	44, 529
BsePI	GCGCGC	1 cut(s)	554
BseRI	GAGGAG	3 cut(s)	577, 580, 583
BseSI	GKGCMC	1 cut(s)	682
BseXI	GCAGC	5 cut(s)	93, 125, 538, 637, 897
Bsh1236I	CGCG	2 cut(s)	556, 558
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	512
BshNI	GGYRCC	1 cut(s)	614
BsiEI	CGRYCG	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	770, 885
BsnI	GGCC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	4 cut(s)	190, 358, 393, 424
Bsp1720I	GCTNAGC	2 cut(s)	83, 157
BspACI	CCGC	3 cut(s)	488, 539, 676
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	3 cut(s)	601, 895, 900
BspFNI	CGCG	2 cut(s)	556, 558
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	453, 616
BspMAI	CTGCAG	2 cut(s)	111, 141
BspMI	ACCTGC	2 cut(s)	191, 493
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	44, 529
BssHII	GCGCGC	1 cut(s)	554
BssMI	GATC	4 cut(s)	190, 358, 393, 424
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	279, 532
Bst6I	CTCTTC	3 cut(s)	203, 356, 807
BstC8I	GCNNGC	5 cut(s)	111, 556, 648, 678, 852
BstDEI	CTNAG	6 cut(s)	83, 157, 588, 823, 887, 903
BstF5I	GGATG	1 cut(s)	867
BstFNI	CGCG	2 cut(s)	556, 558
BstHHI	GCGC	2 cut(s)	556, 558
BstKTI	GATC	4 cut(s)	193, 361, 396, 427
BstMAI	GTCTC	2 cut(s)	770, 885
BstMBI	GATC	4 cut(s)	190, 358, 393, 424
BstMCI	CGRYCG	1 cut(s)	396
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	3 cut(s)	107, 137, 151
BstSLI	GKGCMC	1 cut(s)	682
BstUI	CGCG	2 cut(s)	556, 558
BstV1I	GCAGC	5 cut(s)	93, 125, 538, 637, 897
BsuRI	GGCC	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	867
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	4 cut(s)	275, 523, 537, 630
BveI	ACCTGC	2 cut(s)	191, 493
Cac8I	GCNNGC	5 cut(s)	111, 556, 648, 678, 852
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	2 cut(s)	556, 558
Csp6I	GTAC	4 cut(s)	12, 522, 528, 655
CviAII	CATG	2 cut(s)	356, 703
CviQI	GTAC	4 cut(s)	12, 522, 528, 655
DdeI	CTNAG	6 cut(s)	83, 157, 588, 823, 887, 903
DpnI	GATC	4 cut(s)	192, 360, 395, 426
DpnII	GATC	4 cut(s)	190, 358, 393, 424
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	203, 356, 807
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	3 cut(s)	203, 356, 807
Eco32I	GATATC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	831
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	421
FaeI	CATG	2 cut(s)	359, 706
FatI	CATG	2 cut(s)	355, 702
FauI	CCCGC	1 cut(s)	669
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	2 cut(s)	358, 424
Fnu4HI	GCNGC	5 cut(s)	107, 114, 552, 651, 911
FokI	GGATG	1 cut(s)	854
Fsp4HI	GCNGC	5 cut(s)	107, 114, 552, 651, 911
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	2 cut(s)	555, 557
GluI	GCNGC	5 cut(s)	107, 114, 552, 651, 911
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	2 cut(s)	556, 558
Hin1II	CATG	2 cut(s)	359, 706
Hin6I	GCGC	2 cut(s)	554, 556
HinP1I	GCGC	2 cut(s)	554, 556
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	5 cut(s)	478, 586, 607, 710, 763
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	528
Hpy188I	TCNGA	5 cut(s)	220, 470, 477, 811, 890
Hpy188III	TCNNGA	7 cut(s)	173, 391, 461, 590, 703, 758, 794
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	727, 734, 826
HpyCH4III	ACNGT	2 cut(s)	279, 532
HpyCH4V	TGCA	7 cut(s)	109, 139, 186, 419, 646, 748, 913
HpyF3I	CTNAG	6 cut(s)	83, 157, 588, 823, 887, 903
Hsp92II	CATG	2 cut(s)	359, 706
HspAI	GCGC	2 cut(s)	554, 556
Ksp22I	TGATCA	2 cut(s)	358, 424
Kzo9I	GATC	4 cut(s)	190, 358, 393, 424
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	5 cut(s)	93, 125, 538, 637, 897
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	4 cut(s)	192, 360, 395, 426
MboI	GATC	4 cut(s)	190, 358, 393, 424
MboII	GAAGA	4 cut(s)	190, 343, 749, 824
MfeI	CAATTG	1 cut(s)	786
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	7 cut(s)	265, 379, 406, 444, 471, 717, 786
MlyI	GAGTC	3 cut(s)	580, 704, 772
MmeI	TCCRAC	2 cut(s)	320, 479
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	3 cut(s)	168, 501, 753
MslI	CAYNNNNRTG	1 cut(s)	623
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	2 cut(s)	556, 558
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	4 cut(s)	190, 358, 393, 424
NlaIII	CATG	2 cut(s)	359, 706
NlaIV	GGNNCC	2 cut(s)	453, 616
NmuCI	GTSAC	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	421
PagI	TCATGA	1 cut(s)	702
PaqCI	CACCTGC	2 cut(s)	191, 493
PauI	GCGCGC	1 cut(s)	554
PciSI	GCTCTTC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	478, 607
PkrI	GCNGC	5 cut(s)	108, 115, 553, 652, 912
Ple19I	CGATCG	1 cut(s)	396
PleI	GAGTC	3 cut(s)	580, 704, 771
PpsI	GAGTC	3 cut(s)	580, 704, 771
PshBI	ATTAAT	2 cut(s)	168, 753
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	453, 616
PsrI	GAACNNNNNNTAC	2 cut(s)	653, 685
PstI	CTGCAG	2 cut(s)	111, 141
PteI	GCGCGC	1 cut(s)	554
PvuI	CGATCG	1 cut(s)	396
RsaI	GTAC	4 cut(s)	13, 523, 529, 656
RsaNI	GTAC	4 cut(s)	12, 522, 528, 655
RseI	CAYNNNNRTG	1 cut(s)	623
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	168, 501, 753
SatI	GCNGC	5 cut(s)	107, 114, 552, 651, 911
Sau3AI	GATC	4 cut(s)	190, 358, 393, 424
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	3 cut(s)	580, 704, 772
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	682
SfcI	CTRYAG	3 cut(s)	107, 137, 151
SmiMI	CAYNNNNRTG	1 cut(s)	623
Sse9I	AATT	7 cut(s)	265, 379, 406, 444, 471, 717, 786
SsiI	CCGC	3 cut(s)	488, 539, 676
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	279, 532
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	7 cut(s)	265, 379, 406, 444, 471, 717, 786
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	478, 607
Tru1I	TTAA	3 cut(s)	168, 501, 753
Tru9I	TTAA	3 cut(s)	168, 501, 753
TscAI	CASTG	4 cut(s)	282, 523, 537, 637
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	5 cut(s)	106, 113, 551, 650, 910
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	3 cut(s)	89, 321, 641
TspGWI	ACGGA	2 cut(s)	593, 722
TspRI	CASTG	4 cut(s)	282, 523, 537, 637
VspI	ATTAAT	2 cut(s)	168, 753
XapI	RAATTY	2 cut(s)	444, 471
XspI	CTAG	1 cut(s)	302
ZrmI	AGTACT	1 cut(s)	13
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.