RLG00000032809

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003767
Physical Location & Seq
Forward (+)
19319219 .. 19320556
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032809

Sequence Viewer

Length: 852 bp
ATGGCCTTGAACTGGGAAGCACCACAGTTTTTTGACTCAGACATGACTTGTATCCAGCAGAATATAGAAGCAGAGCTAGTAGGAGACTTCCTTCAATGTGTTAATTCAGACTATTCCAATCCCCATAACTTCCTCGATCCATGGTATGACCCCTGTAATCTTCTTAACCTCGAAAATCCTGACTTTGATCATCTGCTTCCACCTTTTTCTCTCAAACCTGACATGTTTCCAGTACAAGATTTCGAACCTTACCCCCAACCGAAACGCCAAAAGTGCTCGAAAGAGTACTATTGCCGGGATCTTACACCCACTTTCTCTAATGGGTTTGCTCCGAATCCATGTCCTAGGCCCAAGTTTTTTCCCGGGGCCTTTACTACTCCGGTGATCAACTTTCAGCATCCGGAGGTTGTTGATGGCAATACCAGAAAAACTAGTGTTGAAAGTGTGGGGAAGAAAGTGGAAGAAAGAAGTGTATCACCGCAGAGTATCGCGGCAAGAGAAAGGAGGAGGAAAATCACAGAGAAGACTCAAGAGCTAGGGAAGCTTGTTCCTGGAGGAAGCAAGATGAACACAGCTGAGATGCTCACTGCCGCTTACAACTATGTCAAGTTCTTGCAGGCTCAGATGGGGATTCTCGAGTTCATGGGGTCCTTTCAGGAAATTAAGGCAGATCATACAGCTACCAAGGAACTACATGTCGTTGCATCTCCTACTATTCAAGAGAAGCTCTATATGGAGAATAAGTGCTTGGTCCCAAAGGAGTTCTTAGAGGTATTAGCAAACCATTTTGATGCTGAGTCGAAGCCTTCACTCTCCCACAAGCTCAACCAGCTGCTCAAATCTAGCGGATGA

Protein Analysis

284

Amino Acids

32.22

Weight (kDa)

5.7

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 165 - 206 7.6e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 491
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 4 cut(s) 479, 491, 591, 846
AclWI GGATC 2 cut(s) 131, 306
AfaI GTAC 2 cut(s) 234, 287
AfiI CCNNNNNNNGG 1 cut(s) 12
AflIII ACRYGT 2 cut(s) 222, 694
AgsI TTSAA 4 cut(s) 10, 95, 440, 719
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 731, 763
AluBI AGCT 8 cut(s) 76, 535, 544, 575, 680, 727, 823, 832
AluI AGCT 8 cut(s) 76, 535, 544, 575, 680, 727, 823, 832
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 2 cut(s) 131, 306
Ama87I CYCGRG 2 cut(s) 362, 635
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 3 cut(s) 3, 347, 366
ApeKI GCWGC 1 cut(s) 832
AspA2I CCTAGG 1 cut(s) 344
AspS9I GGNCC 4 cut(s) 348, 366, 648, 751
AsuC2I CCSGG 3 cut(s) 296, 363, 364
AsuHPI GGTGA 2 cut(s) 394, 468
AsuII TTCGAA 1 cut(s) 243
AvaI CYCGRG 2 cut(s) 362, 635
AvaII GGWCC 2 cut(s) 648, 751
AvrII CCTAGG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 819
BccI CCATC 2 cut(s) 407, 619
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 62
BclI TGATCA 2 cut(s) 187, 384
BcnI CCSGG 3 cut(s) 296, 363, 364
BcoDI GTCTC 1 cut(s) 78
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 5 cut(s) 77, 345, 432, 536, 843
BfuI GTATCC 1 cut(s) 62
BisI GCNGC 3 cut(s) 492, 591, 833
BlnI CCTAGG 1 cut(s) 344
BlsI GCNGC 3 cut(s) 493, 592, 834
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 4 cut(s) 296, 363, 364, 552
Bme18I GGWCC 2 cut(s) 648, 751
BmeT110I CYCGRG 2 cut(s) 362, 635
BmgT120I GGNCC 4 cut(s) 348, 366, 648, 751
BmiI GGNNCC 3 cut(s) 367, 649, 753
BmrFI CCNGG 4 cut(s) 296, 363, 364, 552
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 4 cut(s) 406, 570, 713, 781
BmuI ACTGGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 3 cut(s) 296, 363, 364
BsaJI CCNNGG 5 cut(s) 140, 344, 362, 363, 684
BsaWI WCCGGW 2 cut(s) 379, 400
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 17, 230
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 5 cut(s) 140, 344, 362, 363, 684
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 4 cut(s) 51, 567, 635, 786
BseNI ACTGG 2 cut(s) 17, 230
BseRI GAGGAG 1 cut(s) 520
BseXI GCAGC 1 cut(s) 819
Bsh1236I CGCG 1 cut(s) 491
BshFI GGCC 3 cut(s) 5, 349, 368
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 2 cut(s) 362, 635
BsiSI CCGG 4 cut(s) 295, 363, 380, 401
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 3 cut(s) 5, 349, 368
BsoBI CYCGRG 2 cut(s) 362, 635
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 278
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 5 cut(s) 136, 187, 298, 384, 670
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 4 cut(s) 479, 491, 591, 846
BspANI GGCC 3 cut(s) 5, 349, 368
BspCNI CTCAG 4 cut(s) 50, 568, 634, 787
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 1 cut(s) 491
BspLI GGNNCC 3 cut(s) 367, 649, 753
BspPI GGATC 2 cut(s) 131, 306
BspT104I TTCGAA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 17, 230
BssECI CCNNGG 5 cut(s) 140, 344, 362, 363, 684
BssMI GATC 5 cut(s) 136, 187, 298, 384, 670
BssT1I CCWWGG 3 cut(s) 140, 344, 684
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 5 cut(s) 37, 576, 621, 766, 795
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 491
BstKTI GATC 5 cut(s) 139, 190, 301, 387, 673
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 5 cut(s) 136, 187, 298, 384, 670
BstMWI GCNNNNNNNGC 3 cut(s) 273, 541, 829
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 226, 698
BstSCI CCNGG 4 cut(s) 294, 361, 362, 550
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 1 cut(s) 819
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 3 cut(s) 5, 349, 368
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 618
Cfr13I GGNCC 4 cut(s) 348, 366, 648, 751
Cfr9I CCCGGG 1 cut(s) 362
Csp6I GTAC 2 cut(s) 233, 286
CviAII CATG 6 cut(s) 43, 141, 223, 339, 643, 695
CviQI GTAC 2 cut(s) 233, 286
DdeI CTNAG 5 cut(s) 37, 576, 621, 766, 795
DpnI GATC 5 cut(s) 138, 189, 300, 386, 672
DpnII GATC 5 cut(s) 136, 187, 298, 384, 670
Eco130I CCWWGG 3 cut(s) 140, 344, 684
Eco47I GGWCC 2 cut(s) 648, 751
Eco88I CYCGRG 2 cut(s) 362, 635
EcoO109I RGGNCCY 2 cut(s) 366, 648
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 3 cut(s) 140, 344, 684
ErhI CCWWGG 3 cut(s) 140, 344, 684
FaeI CATG 6 cut(s) 46, 144, 226, 342, 646, 698
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 1 cut(s) 737
FatI CATG 6 cut(s) 42, 140, 222, 338, 642, 694
FbaI TGATCA 2 cut(s) 187, 384
Fnu4HI GCNGC 3 cut(s) 492, 591, 833
FokI GGATG 1 cut(s) 384
Fsp4HI GCNGC 3 cut(s) 492, 591, 833
FspBI CTAG 5 cut(s) 77, 345, 432, 536, 843
GluI GCNGC 3 cut(s) 492, 591, 833
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 3 cut(s) 5, 349, 368
HapII CCGG 4 cut(s) 295, 363, 380, 401
Hin1II CATG 6 cut(s) 46, 144, 226, 342, 646, 698
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 5 cut(s) 35, 334, 526, 631, 797
HpaII CCGG 4 cut(s) 295, 363, 380, 401
HphI GGTGA 2 cut(s) 394, 468
Hpy188I TCNGA 4 cut(s) 40, 109, 333, 624
Hpy188III TCNNGA 6 cut(s) 179, 401, 530, 635, 656, 719
HpyAV CCTTC 2 cut(s) 101, 816
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 616, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 541, 829
HpyF3I CTNAG 5 cut(s) 37, 576, 621, 766, 795
Hsp92II CATG 6 cut(s) 46, 144, 226, 342, 646, 698
Kpn2I TCCGGA 1 cut(s) 400
Ksp22I TGATCA 2 cut(s) 187, 384
Kzo9I GATC 5 cut(s) 136, 187, 298, 384, 670
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 1 cut(s) 819
LweI GCATC 4 cut(s) 406, 570, 713, 781
MaeI CTAG 5 cut(s) 77, 345, 432, 536, 843
MalI GATC 5 cut(s) 138, 189, 300, 386, 672
MboI GATC 5 cut(s) 136, 187, 298, 384, 670
MboII GAAGA 4 cut(s) 152, 463, 473, 535
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 2 cut(s) 103, 660
MlyI GAGTC 3 cut(s) 29, 520, 806
MnlI CCTC 7 cut(s) 143, 179, 397, 498, 501, 548, 763
MroI TCCGGA 1 cut(s) 400
MseI TTAA 3 cut(s) 102, 165, 663
MslI CAYNNNNRTG 1 cut(s) 789
MspA1I CMGCKG 2 cut(s) 575, 832
MspI CCGG 4 cut(s) 295, 363, 380, 401
MspR9I CCNGG 4 cut(s) 296, 363, 364, 552
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 3 cut(s) 273, 541, 829
NciI CCSGG 3 cut(s) 296, 363, 364
NcoI CCATGG 1 cut(s) 140
NdeII GATC 5 cut(s) 136, 187, 298, 384, 670
NlaIII CATG 6 cut(s) 46, 144, 226, 342, 646, 698
NlaIV GGNNCC 3 cut(s) 367, 649, 753
NspI RCATGY 2 cut(s) 226, 698
NspV TTCGAA 1 cut(s) 243
PaeR7I CTCGAG 1 cut(s) 635
PciI ACATGT 2 cut(s) 222, 694
PfeI GAWTC 2 cut(s) 334, 631
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 3 cut(s) 493, 592, 834
PleI GAGTC 3 cut(s) 29, 520, 805
PpsI GAGTC 3 cut(s) 29, 520, 805
PpuMI RGGWCCY 1 cut(s) 648
PscI ACATGT 2 cut(s) 222, 694
Psp5II RGGWCCY 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 3 cut(s) 367, 649, 753
PspPI GGNCC 4 cut(s) 348, 366, 648, 751
PspPPI RGGWCCY 1 cut(s) 648
PsuI RGATCY 1 cut(s) 298
PvuII CAGCTG 2 cut(s) 575, 832
RsaI GTAC 2 cut(s) 234, 287
RsaNI GTAC 2 cut(s) 233, 286
RseI CAYNNNNRTG 1 cut(s) 789
SaqAI TTAA 3 cut(s) 102, 165, 663
SatI GCNGC 3 cut(s) 492, 591, 833
Sau3AI GATC 5 cut(s) 136, 187, 298, 384, 670
Sau96I GGNCC 4 cut(s) 348, 366, 648, 751
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 3 cut(s) 29, 520, 806
ScrFI CCNGG 4 cut(s) 296, 363, 364, 552
SduI GDGCHC 1 cut(s) 278
SfaNI GCATC 4 cut(s) 406, 570, 713, 781
Sfr274I CTCGAG 1 cut(s) 635
SfuI TTCGAA 1 cut(s) 243
SinI GGWCC 2 cut(s) 648, 751
SlaI CTCGAG 1 cut(s) 635
SmaI CCCGGG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 2 cut(s) 528, 635
SmoI CTYRAG 2 cut(s) 528, 635
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 2 cut(s) 103, 660
SsiI CCGC 4 cut(s) 479, 491, 591, 846
SspMI CTAG 5 cut(s) 77, 345, 432, 536, 843
StyD4I CCNGG 4 cut(s) 294, 361, 362, 550
StyI CCWWGG 3 cut(s) 140, 344, 684
TaaI ACNGT 1 cut(s) 27
TaqI TCGA 6 cut(s) 135, 171, 243, 278, 636, 800
TasI AATT 2 cut(s) 103, 660
TatI WGTACW 2 cut(s) 232, 285
TauI GCSGC 2 cut(s) 494, 593
TfiI GAWTC 2 cut(s) 334, 631
Tru1I TTAA 3 cut(s) 102, 165, 663
Tru9I TTAA 3 cut(s) 102, 165, 663
TscAI CASTG 1 cut(s) 592
TseI GCWGC 1 cut(s) 832
TspDTI ATGAA 2 cut(s) 581, 631
TspMI CCCGGG 1 cut(s) 362
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 2 cut(s) 648, 751
XceI RCATGY 2 cut(s) 226, 698
XhoI CTCGAG 1 cut(s) 635
XmaI CCCGGG 1 cut(s) 362
XmaJI CCTAGG 1 cut(s) 344
XspI CTAG 5 cut(s) 77, 345, 432, 536, 843
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.