Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016842.1

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1340

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016842.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 892 bp

atggccttgaactgggaagtacctcagttttttgactcagacatgacttgtatccagcagaatctagaagcagagctagtaggagacttccttcaatgtgttaattcagactattccaatccccataactttctcgatccctggtatgacccctgttatcttcttaacctcgaaaatcctgactttgatcatctgcttccacctttttctctcaaacctgacatgtttccagtacaagatttcgaaccttacccccaaccgaaacgccaaaagtgctcaaaagagtactattgccgggatcttacacccactttctctaatggcatccggaggttgttgatggcaattccagaaaaactagtgttgaaaatgtggggaagaaagtggaagaaagaagtgtatcgccgcagagtatcgcggcaagagaaaggaggaggaaaatcacggagaagactcaagagctttccaaacccatgtgctaggcccgagtttttttccggggcctttactactccggtgctctactttcagcatccggaggttgttgatggcaattccagaaaaactagtgttgaaaatgtggggaagaaagtggaagaaagaagtgtatcgccgcagagtatcgcggcaagagaaaggaggaggaaaatcacagagaagactcaagagctagggaagcttgttcctggaggaagcaagatgaacacagctgagatgctcactgccgcttacaactatgtcaagttcttgcaagctcagatggggattctcgagttcatggggtcctttcaggaaatgaaggcagatcatacacctaccaaggaactacatgtcgttgcatctcctactattcaagagaagctctatttggagcataagtgcttggtcccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

297

Amino Acids

34.5

Weight (kDa)

8.93

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	418, 626
AccIII	TCCGGA	2 cut(s)	327, 535
AciI	CCGC	5 cut(s)	406, 418, 614, 626, 726
AclWI	GGATC	2 cut(s)	131, 306
AfaI	GTAC	3 cut(s)	21, 234, 287
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	2 cut(s)	222, 829
AgsI	TTSAA	5 cut(s)	10, 95, 367, 575, 854
AhlI	ACTAGT	2 cut(s)	358, 566
AjnI	CCWGG	2 cut(s)	140, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	851, 883
AluBI	AGCT	7 cut(s)	76, 462, 670, 679, 710, 755, 862
AluI	AGCT	7 cut(s)	76, 462, 670, 679, 710, 755, 862
Alw21I	GWGCWC	2 cut(s)	278, 522
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	131, 306
Ama87I	CYCGRG	2 cut(s)	485, 770
Aor13HI	TCCGGA	2 cut(s)	327, 535
AoxI	GGCC	3 cut(s)	3, 482, 501
AspS9I	GGNCC	4 cut(s)	483, 501, 783, 886
AsuC2I	CCSGG	2 cut(s)	296, 499
AsuII	TTCGAA	1 cut(s)	243
AvaI	CYCGRG	2 cut(s)	485, 770
AvaII	GGWCC	2 cut(s)	783, 886
BbsI	GAAGAC	2 cut(s)	457, 665
Bbv12I	GWGCWC	2 cut(s)	278, 522
BccI	CCATC	3 cut(s)	334, 542, 754
BciT130I	CCWGG	2 cut(s)	142, 687
BciVI	GTATCC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	2 cut(s)	296, 499
BcoDI	GTCTC	1 cut(s)	78
BcuI	ACTAGT	2 cut(s)	358, 566
BfaI	CTAG	6 cut(s)	65, 77, 359, 480, 567, 671
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	406, 419, 614, 627, 726
BlsI	GCNGC	5 cut(s)	407, 420, 615, 628, 727
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	4 cut(s)	142, 296, 499, 687
Bme18I	GGWCC	2 cut(s)	783, 886
BmeT110I	CYCGRG	2 cut(s)	485, 770
BmgT120I	GGNCC	4 cut(s)	483, 501, 783, 886
BmiI	GGNNCC	3 cut(s)	502, 784, 888
BmrFI	CCNGG	4 cut(s)	142, 296, 499, 687
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	4 cut(s)	333, 541, 705, 848
BmuI	ACTGGG	1 cut(s)	22
BpiI	GAAGAC	2 cut(s)	457, 665
BpmI	CTGGAG	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	440, 648
BpuMI	CCSGG	2 cut(s)	296, 499
BsaJI	CCNNGG	3 cut(s)	140, 498, 819
BsaWI	WCCGGW	3 cut(s)	327, 514, 535
BsaXI	ACNNNNNCTCC	1 cut(s)	863
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	17, 230
BseAI	TCCGGA	2 cut(s)	327, 535
BseBI	CCWGG	2 cut(s)	142, 687
BseDI	CCNNGG	3 cut(s)	140, 498, 819
BseGI	GGATG	2 cut(s)	324, 532
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	4 cut(s)	38, 51, 702, 770
BseNI	ACTGG	2 cut(s)	17, 230
BseRI	GAGGAG	2 cut(s)	447, 655
Bsh1236I	CGCG	2 cut(s)	418, 626
BshFI	GGCC	3 cut(s)	5, 484, 503
BsiHKAI	GWGCWC	2 cut(s)	278, 522
BsiHKCI	CYCGRG	2 cut(s)	485, 770
BsiSI	CCGG	5 cut(s)	295, 328, 498, 515, 536
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	872
BsnI	GGCC	3 cut(s)	5, 484, 503
BsoBI	CYCGRG	2 cut(s)	485, 770
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	278, 522
Bsp13I	TCCGGA	2 cut(s)	327, 535
Bsp143I	GATC	4 cut(s)	136, 187, 298, 805
BspACI	CCGC	5 cut(s)	406, 418, 614, 626, 726
BspANI	GGCC	3 cut(s)	5, 484, 503
BspCNI	CTCAG	4 cut(s)	37, 50, 703, 769
BspEI	TCCGGA	2 cut(s)	327, 535
BspFNI	CGCG	2 cut(s)	418, 626
BspLI	GGNNCC	3 cut(s)	502, 784, 888
BspPI	GGATC	2 cut(s)	131, 306
BspT104I	TTCGAA	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	17, 230
BssECI	CCNNGG	3 cut(s)	140, 498, 819
BssMI	GATC	4 cut(s)	136, 187, 298, 805
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	2 cut(s)	142, 687
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	4 cut(s)	24, 37, 711, 756
BstF5I	GGATG	2 cut(s)	324, 532
BstFNI	CGCG	2 cut(s)	418, 626
BstKTI	GATC	4 cut(s)	139, 190, 301, 808
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	4 cut(s)	136, 187, 298, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 676
BstNI	CCWGG	2 cut(s)	142, 687
BstNSI	RCATGY	2 cut(s)	226, 833
BstSCI	CCNGG	4 cut(s)	140, 294, 497, 685
BstUI	CGCG	2 cut(s)	418, 626
BstV2I	GAAGAC	2 cut(s)	457, 665
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	5, 484, 503
BtsCI	GGATG	2 cut(s)	324, 532
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	1 cut(s)	753
Cfr13I	GGNCC	4 cut(s)	483, 501, 783, 886
Csp6I	GTAC	3 cut(s)	20, 233, 286
CviAII	CATG	5 cut(s)	43, 223, 474, 778, 830
CviQI	GTAC	3 cut(s)	20, 233, 286
DdeI	CTNAG	4 cut(s)	24, 37, 711, 756
DpnI	GATC	4 cut(s)	138, 189, 300, 807
DpnII	GATC	4 cut(s)	136, 187, 298, 805
Eco130I	CCWWGG	1 cut(s)	819
Eco47I	GGWCC	2 cut(s)	783, 886
Eco88I	CYCGRG	2 cut(s)	485, 770
EcoO109I	RGGNCCY	2 cut(s)	501, 783
EcoRII	CCWGG	2 cut(s)	140, 685
EcoT14I	CCWWGG	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	5 cut(s)	46, 226, 477, 781, 833
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	5 cut(s)	42, 222, 473, 777, 829
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	5 cut(s)	406, 419, 614, 627, 726
FokI	GGATG	2 cut(s)	311, 519
Fsp4HI	GCNGC	5 cut(s)	406, 419, 614, 627, 726
FspBI	CTAG	6 cut(s)	65, 77, 359, 480, 567, 671
GluI	GCNGC	5 cut(s)	406, 419, 614, 627, 726
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	5, 484, 503
HapII	CCGG	5 cut(s)	295, 328, 498, 515, 536
Hin1II	CATG	5 cut(s)	46, 226, 477, 781, 833
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	5 cut(s)	35, 61, 453, 661, 766
HpaII	CCGG	5 cut(s)	295, 328, 498, 515, 536
Hpy188I	TCNGA	3 cut(s)	40, 109, 759
HpyAV	CCTTC	2 cut(s)	101, 793
HpyCH4V	TGCA	2 cut(s)	751, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 676
HpyF3I	CTNAG	4 cut(s)	24, 37, 711, 756
Hsp92II	CATG	5 cut(s)	46, 226, 477, 781, 833
Kpn2I	TCCGGA	2 cut(s)	327, 535
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	136, 187, 298, 805
LmnI	GCTCC	1 cut(s)	871
LweI	GCATC	4 cut(s)	333, 541, 705, 848
MaeI	CTAG	6 cut(s)	65, 77, 359, 480, 567, 671
MalI	GATC	4 cut(s)	138, 189, 300, 807
MboI	GATC	4 cut(s)	136, 187, 298, 805
MboII	GAAGA	7 cut(s)	152, 390, 400, 462, 598, 608, 670
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	278, 522
MluCI	AATT	3 cut(s)	103, 345, 553
MlyI	GAGTC	3 cut(s)	29, 447, 655
MnlI	CCTC	9 cut(s)	33, 179, 324, 425, 428, 532, 633, 636, 683
MroI	TCCGGA	2 cut(s)	327, 535
MseI	TTAA	2 cut(s)	102, 165
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	5 cut(s)	295, 328, 498, 515, 536
MspR9I	CCNGG	4 cut(s)	142, 296, 499, 687
MvaI	CCWGG	2 cut(s)	142, 687
MvnI	CGCG	2 cut(s)	418, 626
MwoI	GCNNNNNNNGC	2 cut(s)	273, 676
NciI	CCSGG	2 cut(s)	296, 499
NdeII	GATC	4 cut(s)	136, 187, 298, 805
NlaIII	CATG	5 cut(s)	46, 226, 477, 781, 833
NlaIV	GGNNCC	3 cut(s)	502, 784, 888
NspI	RCATGY	2 cut(s)	226, 833
NspV	TTCGAA	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	770
PciI	ACATGT	2 cut(s)	222, 829
PfeI	GAWTC	2 cut(s)	61, 766
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	5 cut(s)	407, 420, 615, 628, 727
PleI	GAGTC	3 cut(s)	29, 447, 655
PpsI	GAGTC	3 cut(s)	29, 447, 655
PpuMI	RGGWCCY	1 cut(s)	783
PscI	ACATGT	2 cut(s)	222, 829
Psp5II	RGGWCCY	1 cut(s)	783
Psp6I	CCWGG	2 cut(s)	140, 685
PspGI	CCWGG	2 cut(s)	140, 685
PspN4I	GGNNCC	3 cut(s)	502, 784, 888
PspPI	GGNCC	4 cut(s)	483, 501, 783, 886
PspPPI	RGGWCCY	1 cut(s)	783
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	3 cut(s)	21, 234, 287
RsaNI	GTAC	3 cut(s)	20, 233, 286
SaqAI	TTAA	2 cut(s)	102, 165
SatI	GCNGC	5 cut(s)	406, 419, 614, 627, 726
Sau3AI	GATC	4 cut(s)	136, 187, 298, 805
Sau96I	GGNCC	4 cut(s)	483, 501, 783, 886
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	3 cut(s)	29, 447, 655
ScrFI	CCNGG	4 cut(s)	142, 296, 499, 687
SduI	GDGCHC	2 cut(s)	278, 522
SfaNI	GCATC	4 cut(s)	333, 541, 705, 848
Sfr274I	CTCGAG	1 cut(s)	770
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	2 cut(s)	783, 886
SlaI	CTCGAG	1 cut(s)	770
SmlI	CTYRAG	3 cut(s)	455, 663, 770
SmoI	CTYRAG	3 cut(s)	455, 663, 770
SpeI	ACTAGT	2 cut(s)	358, 566
Sse9I	AATT	3 cut(s)	103, 345, 553
SsiI	CCGC	5 cut(s)	406, 418, 614, 626, 726
SspMI	CTAG	6 cut(s)	65, 77, 359, 480, 567, 671
StyD4I	CCNGG	4 cut(s)	140, 294, 497, 685
StyI	CCWWGG	1 cut(s)	819
TaqI	TCGA	4 cut(s)	135, 171, 243, 771
TasI	AATT	3 cut(s)	103, 345, 553
TatI	WGTACW	2 cut(s)	232, 285
TauI	GCSGC	5 cut(s)	408, 421, 616, 629, 728
TfiI	GAWTC	2 cut(s)	61, 766
Tru1I	TTAA	2 cut(s)	102, 165
Tru9I	TTAA	2 cut(s)	102, 165
TscAI	CASTG	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	716, 766, 812
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	1 cut(s)	727
VpaK11BI	GGWCC	2 cut(s)	783, 886
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	2 cut(s)	226, 833
XhoI	CTCGAG	1 cut(s)	770
XspI	CTAG	6 cut(s)	65, 77, 359, 480, 567, 671
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.