Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Forward (+)

7423072 .. 7424164

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G134200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCCTTGAGTTCATTTTCGAACCCGGAAATGGTACCACCTCAGTCTTTTGGCTCAGTGATGACGAACTTTTTCCAGCCAAATATAGAAGCAGAGCTATTAGCAGCAGAAGAGCTTCTCAAATATTACCAACTAGATTACAATCGTTCCATCCTTCCCAACAACTTATTTCTTGATGATCATCCATGCCATGACCCCTACAATCTTGTCAACCTCGAAAACTATCATCTTGACACTACCAGTGATGATCATCTTTTTCTTCCACATCTCACTACCCCAGACATGTTTCCACAACTTGATTTCTATTCGCACCCGTACCCGAAACGTCAAAAATGCTTCCAAGATTTCGTTTACCCGGAGTTCACACCCGCAACTTTCTATGATGCGTTTCCTCCAGATTCTTGTCCCTTGCCCGAGTTGCTTCCGGCACCAGGGGTCTTTGCTACTCCATTGCTTACATTTAATCAGCATCTGGAGGAGACAGTCACTGATAGCAACAAGTCAAAAGTTAATGACTATGAGATTGGTTTTACTGCTAAGAAGAAAGTGGAAGAAAAATGCGTATCTGCGCAGAGTATTGCGGCTAGAGAAAGGAGGAGGAAGATCACAGAGAAGACTCAAGAGCTAGGGAAGCTTGTTCCTGGAGGAAGCAAGATGAACACAGCTGAGATGCTCACTGCTGCTTACAACTTTGTCAAGTACTTGCGGGCTCAAGTTGGCATTCTTGAATTCATGGGGTCATTTCAGGAATTGAAGGGAGCTCCTCCTGCTGAAGAGCTGCAAGTAGTTGCATTTCCTATTATTCAAGAGAAGCTATATTTGAAGAACAATTGCTTGGTTCCGGAGAAGTTTGTGGAGATATTAGCAAAACACTTTGATGCTCAATCAAAACCTTCGCTCTCCAACAATCTCCACCAGCTGCTCACATCTAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

313

Amino Acids

35.44

Weight (kDa)

5.23

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	570
Acc65I	GGTACC	1 cut(s)	34
AccB1I	GGYRCC	2 cut(s)	34, 427
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	3 cut(s)	369, 581, 706
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	3 cut(s)	36, 317, 701
AfiI	CCNNNNNNNGG	2 cut(s)	31, 431
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	728, 754, 806, 823
AjnI	CCWGG	2 cut(s)	430, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
AluBI	AGCT	9 cut(s)	97, 115, 625, 634, 665, 761, 778, 814, 919
AluI	AGCT	9 cut(s)	97, 115, 625, 634, 665, 761, 778, 814, 919
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	1 cut(s)	473
AlwNI	CAGNNNCTG	2 cut(s)	472, 488
Ama87I	CYCGRG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	104, 680, 778, 919
ApoI	RAATTY	1 cut(s)	728
Asp700I	GAANNNNTTC	2 cut(s)	71, 114
Asp718I	GGTACC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	571
AsuC2I	CCSGG	2 cut(s)	26, 356
AsuII	TTCGAA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	413
BanI	GGYRCC	2 cut(s)	34, 427
BanII	GRGCYC	2 cut(s)	712, 763
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	4 cut(s)	116, 667, 765, 906
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	432, 642
BclI	TGATCA	2 cut(s)	178, 247
BcnI	CCSGG	2 cut(s)	26, 356
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	4 cut(s)	134, 585, 626, 930
BisI	GCNGC	5 cut(s)	105, 582, 681, 779, 920
BlsI	GCNGC	5 cut(s)	106, 583, 682, 780, 921
BmcAI	AGTACT	1 cut(s)	701
Bme1390I	CCNGG	4 cut(s)	26, 356, 432, 642
BmeT110I	CYCGRG	1 cut(s)	413
BmiI	GGNNCC	3 cut(s)	36, 429, 840
BmrFI	CCNGG	4 cut(s)	26, 356, 432, 642
BmsI	GCATC	4 cut(s)	373, 478, 660, 868
BpiI	GAAGAC	1 cut(s)	620
BpmI	CTGGAG	3 cut(s)	378, 494, 663
Bpu14I	TTCGAA	1 cut(s)	20
BpuEI	CTTGAG	3 cut(s)	28, 603, 696
BpuMI	CCSGG	2 cut(s)	26, 356
BsaBI	GATNNNNATC	3 cut(s)	141, 180, 249
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	841
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 431
Bse1I	ACTGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	449
Bse8I	GATNNNNATC	3 cut(s)	141, 180, 249
BseAI	TCCGGA	1 cut(s)	841
BseBI	CCWGG	2 cut(s)	432, 642
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	150, 181
BseJI	GATNNNNATC	3 cut(s)	141, 180, 249
BseLI	CCNNNNNNNGG	2 cut(s)	31, 431
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	3 cut(s)	56, 69, 657
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	3 cut(s)	491, 610, 753
BseXI	GCAGC	4 cut(s)	116, 667, 765, 906
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	34, 427
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	4 cut(s)	26, 356, 425, 842
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	31, 431
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	720
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	712, 763
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	3 cut(s)	178, 247, 603
BspACI	CCGC	3 cut(s)	369, 581, 706
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	55, 68, 658
BspEI	TCCGGA	1 cut(s)	841
BspLI	GGNNCC	3 cut(s)	36, 429, 840
BspQI	GCTCTTC	2 cut(s)	105, 768
BspT104I	TTCGAA	1 cut(s)	20
BspT107I	GGYRCC	2 cut(s)	34, 427
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	178, 247, 603
Bst2UI	CCWGG	2 cut(s)	432, 642
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	2 cut(s)	105, 768
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	4 cut(s)	42, 55, 537, 666
BstF5I	GGATG	2 cut(s)	150, 181
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	3 cut(s)	181, 250, 606
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	3 cut(s)	178, 247, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	418, 631, 767
BstNI	CCWGG	2 cut(s)	432, 642
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	4 cut(s)	24, 354, 430, 640
BstV1I	GCAGC	4 cut(s)	116, 667, 765, 906
BstV2I	GAAGAC	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	150, 181
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	4 cut(s)	63, 247, 486, 675
Cac8I	GCNNGC	1 cut(s)	708
CaiI	CAGNNNCTG	2 cut(s)	472, 488
CfoI	GCGC	1 cut(s)	571
Csp6I	GTAC	3 cut(s)	35, 316, 700
CviAII	CATG	4 cut(s)	186, 191, 283, 733
CviQI	GTAC	3 cut(s)	35, 316, 700
DdeI	CTNAG	4 cut(s)	42, 55, 537, 666
DpnI	GATC	3 cut(s)	180, 249, 605
DpnII	GATC	3 cut(s)	178, 247, 603
Eam1104I	CTCTTC	2 cut(s)	105, 768
EarI	CTCTTC	2 cut(s)	105, 768
Ecl136II	GAGCTC	1 cut(s)	761
Eco24I	GRGCYC	2 cut(s)	712, 763
Eco53kI	GAGCTC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	2 cut(s)	430, 640
EcoT38I	GRGCYC	2 cut(s)	712, 763
FaeI	CATG	4 cut(s)	189, 194, 286, 736
FaiI	YATR	8 cut(s)	86, 187, 192, 284, 381, 519, 734, 817
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	4 cut(s)	185, 190, 282, 732
FauI	CCCGC	2 cut(s)	376, 699
FbaI	TGATCA	2 cut(s)	178, 247
Fnu4HI	GCNGC	5 cut(s)	105, 582, 681, 779, 920
FokI	GGATG	2 cut(s)	137, 168
FriOI	GRGCYC	2 cut(s)	712, 763
Fsp4HI	GCNGC	5 cut(s)	105, 582, 681, 779, 920
FspBI	CTAG	4 cut(s)	134, 585, 626, 930
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	5 cut(s)	105, 582, 681, 779, 920
GsuI	CTGGAG	3 cut(s)	378, 494, 663
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	26, 356, 425, 842
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	4 cut(s)	189, 194, 286, 736
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	2 cut(s)	398, 616
HpaII	CCGG	4 cut(s)	26, 356, 425, 842
Hpy166II	GTNNAC	3 cut(s)	211, 352, 363
Hpy188III	TCNNGA	9 cut(s)	173, 230, 395, 473, 620, 725, 746, 806, 842
Hpy8I	GTNNAC	3 cut(s)	211, 352, 363
HpyAV	CCTTC	3 cut(s)	164, 748, 903
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	781, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	418, 631, 767
HpyF3I	CTNAG	4 cut(s)	42, 55, 537, 666
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	4 cut(s)	189, 194, 286, 736
HspAI	GCGC	1 cut(s)	569
Kpn2I	TCCGGA	1 cut(s)	841
KpnI	GGTACC	1 cut(s)	38
Ksp22I	TGATCA	2 cut(s)	178, 247
Kzo9I	GATC	3 cut(s)	178, 247, 603
LguI	GCTCTTC	2 cut(s)	105, 768
LmnI	GCTCC	2 cut(s)	758, 766
Lsp1109I	GCAGC	4 cut(s)	116, 667, 765, 906
LweI	GCATC	4 cut(s)	373, 478, 660, 868
MaeI	CTAG	4 cut(s)	134, 585, 626, 930
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	3 cut(s)	180, 249, 605
MboI	GATC	3 cut(s)	178, 247, 603
MboII	GAAGA	8 cut(s)	122, 251, 553, 563, 613, 625, 785, 835
MfeI	CAATTG	1 cut(s)	829
MhlI	GDGCHC	2 cut(s)	712, 763
MluCI	AATT	3 cut(s)	728, 749, 829
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	927
MnlI	CCTC	8 cut(s)	51, 224, 402, 469, 588, 591, 638, 774
MroI	TCCGGA	1 cut(s)	841
MroXI	GAANNNNTTC	2 cut(s)	71, 114
MseI	TTAA	2 cut(s)	462, 510
MslI	CAYNNNNRTG	1 cut(s)	876
MspA1I	CMGCKG	2 cut(s)	665, 919
MspI	CCGG	4 cut(s)	26, 356, 425, 842
MspR9I	CCNGG	4 cut(s)	26, 356, 432, 642
MunI	CAATTG	1 cut(s)	829
Mva1269I	GAATGC	1 cut(s)	720
MvaI	CCWGG	2 cut(s)	432, 642
MwoI	GCNNNNNNNGC	3 cut(s)	418, 631, 767
NciI	CCSGG	2 cut(s)	26, 356
NdeII	GATC	3 cut(s)	178, 247, 603
NlaIII	CATG	4 cut(s)	189, 194, 286, 736
NlaIV	GGNNCC	3 cut(s)	36, 429, 840
NmuCI	GTSAC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	570
NspI	RCATGY	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	20
PciI	ACATGT	1 cut(s)	282
PciSI	GCTCTTC	2 cut(s)	105, 768
PctI	GAATGC	1 cut(s)	720
PdmI	GAANNNNTTC	2 cut(s)	71, 114
PfeI	GAWTC	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	5 cut(s)	106, 583, 682, 780, 921
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PscI	ACATGT	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	763
Psp6I	CCWGG	2 cut(s)	430, 640
PspGI	CCWGG	2 cut(s)	430, 640
PspN4I	GGNNCC	3 cut(s)	36, 429, 840
PstNI	CAGNNNCTG	2 cut(s)	472, 488
PvuII	CAGCTG	2 cut(s)	665, 919
RsaI	GTAC	3 cut(s)	36, 317, 701
RsaNI	GTAC	3 cut(s)	35, 316, 700
RseI	CAYNNNNRTG	1 cut(s)	876
SacI	GAGCTC	1 cut(s)	763
SapI	GCTCTTC	2 cut(s)	105, 768
SaqAI	TTAA	2 cut(s)	462, 510
SatI	GCNGC	5 cut(s)	105, 582, 681, 779, 920
Sau3AI	GATC	3 cut(s)	178, 247, 603
ScaI	AGTACT	1 cut(s)	701
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	4 cut(s)	26, 356, 432, 642
SduI	GDGCHC	2 cut(s)	712, 763
SfaNI	GCATC	4 cut(s)	373, 478, 660, 868
SfuI	TTCGAA	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	3 cut(s)	7, 618, 711
SmoI	CTYRAG	3 cut(s)	7, 618, 711
Sse9I	AATT	3 cut(s)	728, 749, 829
SsiI	CCGC	3 cut(s)	369, 581, 706
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	4 cut(s)	134, 585, 626, 930
SstI	GAGCTC	1 cut(s)	763
StyD4I	CCNGG	4 cut(s)	24, 354, 430, 640
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	20, 216
TasI	AATT	3 cut(s)	728, 749, 829
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	462, 510
Tru9I	TTAA	2 cut(s)	462, 510
TscAI	CASTG	4 cut(s)	63, 247, 493, 682
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	104, 680, 778, 919
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	671, 721
TspRI	CASTG	4 cut(s)	63, 247, 493, 682
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	286
XmnI	GAANNNNTTC	2 cut(s)	71, 114
XspI	CTAG	4 cut(s)	134, 585, 626, 930
ZrmI	AGTACT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.