Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Forward (+)

81525128 .. 81526090

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTGCTATGAGTACCACTTTTTGCACAGATTGGGGGTCTCTTCAGCTTCTCAGTAACAACCATAACCCTAACCCAGACTATGATCACATGTTTAGCTTCCAGACCCAACAGGATGAGCTGGCAGCAGCAAATATCTTGGGTCTGGACTACAGTGTAGCTCTTGATGATCCAAACCCACTACTTCTCTCCCAAACATTTTTCAGTGACCAAGAGTTCCTCCTTCCTCTTGACGATCATGAATACTATTATCATGATGAGTACCCAAAACGTCAAAAGACCCATCAACAATTCCATTCCAGCTTCAATGGGTTTGTACCAAGTCCAAGTATGATACCGGAGTTCGTGCAGCCTCACCTACCTTTGCCCCCTCCTGAAATTCAGATTCAACAGCAGTCAGCAGCCCAATTGTATGCTAATTGTAGACTAAGCAATAAGGATATTAGTACTGCTGCGAAAGAGAAGGCCAACAGTAATGGAGGAGTGAGCTTGTCTCCACAGAGCATTGCGGCCCGCGAGAGGAGGAGGAGGATAACAGAGAAGACTAATGAGCTTGGGAGGCTGGTTCCTAGTGGAAGCAAGATGAATACTGCTGAAATGCTGCAATCTGCTTATAAGTACATTAAGTTCTTGCAGGCACAAGTTGCAATGCTCAAACTCATGGATTCAATGCAGGAAAAGAAAGGCCAACGGTTGCATAATCAGGAAGGTCTTCAAGTTCTTGCATCCCCAATTGTTCAGGAGAAGTTGTACTCAGAAGAAAAGTGCTTGGTTTCAAGAGAATTTGTTGAAACCCTAGCAAATAATCAAGACATCCAATCAAAGCCATTGCTCAAGGACAACATTGCTAAGTTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

286

Amino Acids

32.47

Weight (kDa)

5.77

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	171 - 212	1.2e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccI	GTMKAC	1 cut(s)	424
AccII	CGCG	1 cut(s)	516
AciI	CCGC	2 cut(s)	509, 514
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	378, 782
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	6 cut(s)	16, 263, 318, 448, 620, 752
AfiI	CCNNNNNNNGG	1 cut(s)	519
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	6 cut(s)	307, 389, 669, 716, 777, 791
AluBI	AGCT	7 cut(s)	49, 99, 121, 161, 303, 489, 553
AluI	AGCT	7 cut(s)	49, 99, 121, 161, 303, 489, 553
Alw26I	GTCTC	2 cut(s)	45, 498
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	3 cut(s)	465, 510, 685
ApeKI	GCWGC	7 cut(s)	5, 125, 128, 349, 401, 452, 601
ApoI	RAATTY	2 cut(s)	378, 782
Asp700I	GAANNNNTTC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	347
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
BbsI	GAAGAC	2 cut(s)	548, 704
BbvI	GCAGC	6 cut(s)	137, 140, 361, 413, 439, 588
BccI	CCATC	1 cut(s)	291
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	45, 498
BfaI	CTAG	2 cut(s)	570, 797
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	8 cut(s)	6, 126, 129, 350, 402, 453, 510, 602
BlsI	GCNGC	8 cut(s)	7, 127, 130, 351, 403, 454, 511, 603
BmcAI	AGTACT	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	567
BmsI	GCATC	1 cut(s)	734
BpiI	GAAGAC	2 cut(s)	548, 704
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
BpuEI	CTTGAG	1 cut(s)	818
BsaI	GGTCTC	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse3DI	GCAATG	4 cut(s)	504, 654, 827, 843
BseGI	GGATG	3 cut(s)	121, 725, 813
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMI	GCAATG	4 cut(s)	504, 654, 827, 843
BseMII	CTCAG	2 cut(s)	67, 768
BseRI	GAGGAG	4 cut(s)	495, 535, 538, 541
BseXI	GCAGC	6 cut(s)	137, 140, 361, 413, 439, 588
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	467, 512, 687
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	2 cut(s)	45, 498
BsnI	GGCC	3 cut(s)	467, 512, 687
Bso31I	GGTCTC	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	85, 169, 235
BspACI	CCGC	2 cut(s)	509, 514
BspANI	GGCC	3 cut(s)	467, 512, 687
BspCNI	CTCAG	2 cut(s)	66, 767
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	2 cut(s)	238, 253
BspLI	GGNNCC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	4 cut(s)	504, 654, 827, 843
BssMI	GATC	3 cut(s)	85, 169, 235
Bst4CI	ACNGT	3 cut(s)	155, 473, 693
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	3 cut(s)	123, 514, 636
BstDEI	CTNAG	4 cut(s)	53, 428, 754, 849
BstF5I	GGATG	3 cut(s)	121, 725, 813
BstFNI	CGCG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	88, 172, 238
BstMAI	GTCTC	2 cut(s)	45, 498
BstMBI	GATC	3 cut(s)	85, 169, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 644
BstNSI	RCATGY	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	6 cut(s)	137, 140, 361, 413, 439, 588
BstV2I	GAAGAC	2 cut(s)	548, 704
BsuRI	GGCC	3 cut(s)	467, 512, 687
BtsCI	GGATG	3 cut(s)	121, 725, 813
BtsIMutI	CAGTG	2 cut(s)	160, 211
Cac8I	GCNNGC	3 cut(s)	123, 514, 636
CciI	TCATGA	2 cut(s)	238, 253
Cfr13I	GGNCC	1 cut(s)	511
Csp6I	GTAC	6 cut(s)	15, 262, 317, 447, 619, 751
CviAII	CATG	4 cut(s)	91, 239, 254, 661
CviQI	GTAC	6 cut(s)	15, 262, 317, 447, 619, 751
DdeI	CTNAG	4 cut(s)	53, 428, 754, 849
DpnI	GATC	3 cut(s)	87, 171, 237
DpnII	GATC	3 cut(s)	85, 169, 235
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	29
FaeI	CATG	4 cut(s)	94, 242, 257, 664
FatI	CATG	4 cut(s)	90, 238, 253, 660
FauI	CCCGC	1 cut(s)	521
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	8 cut(s)	6, 126, 129, 350, 402, 453, 510, 602
FokI	GGATG	3 cut(s)	128, 712, 800
Fsp4HI	GCNGC	8 cut(s)	6, 126, 129, 350, 402, 453, 510, 602
FspBI	CTAG	2 cut(s)	570, 797
GluI	GCNGC	8 cut(s)	6, 126, 129, 350, 402, 453, 510, 602
HaeIII	GGCC	3 cut(s)	467, 512, 687
HapII	CCGG	1 cut(s)	338
Hin1II	CATG	4 cut(s)	94, 242, 257, 664
HinfI	GANTC	2 cut(s)	385, 665
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	2 cut(s)	384, 757
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	233, 457, 701
HpyCH4III	ACNGT	3 cut(s)	155, 473, 693
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	8 cut(s)	27, 349, 604, 634, 647, 673, 697, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 644
HpyF3I	CTNAG	4 cut(s)	53, 428, 754, 849
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	4 cut(s)	94, 242, 257, 664
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	85, 169, 235
Lsp1109I	GCAGC	6 cut(s)	137, 140, 361, 413, 439, 588
LweI	GCATC	1 cut(s)	734
MaeI	CTAG	2 cut(s)	570, 797
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	2 cut(s)	56, 206
MalI	GATC	3 cut(s)	87, 171, 237
MboI	GATC	3 cut(s)	85, 169, 235
MboII	GAAGA	4 cut(s)	35, 553, 704, 770
MfeI	CAATTG	2 cut(s)	407, 732
MluCI	AATT	6 cut(s)	290, 378, 407, 418, 732, 782
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	1 cut(s)	624
MspI	CCGG	1 cut(s)	338
MunI	CAATTG	2 cut(s)	407, 732
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	559, 644
NdeII	GATC	3 cut(s)	85, 169, 235
NlaIII	CATG	4 cut(s)	94, 242, 257, 664
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	94
PagI	TCATGA	2 cut(s)	238, 253
PciI	ACATGT	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	385, 665
PkrI	GCNGC	8 cut(s)	7, 127, 130, 351, 403, 454, 511, 603
PscI	ACATGT	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	511
PsrI	GAACNNNNNNTAC	2 cut(s)	611, 643
RsaI	GTAC	6 cut(s)	16, 263, 318, 448, 620, 752
RsaNI	GTAC	6 cut(s)	15, 262, 317, 447, 619, 751
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	8 cut(s)	6, 126, 129, 350, 402, 453, 510, 602
Sau3AI	GATC	3 cut(s)	85, 169, 235
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	734
SfcI	CTRYAG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	6 cut(s)	290, 378, 407, 418, 732, 782
SsiI	CCGC	2 cut(s)	509, 514
SspMI	CTAG	2 cut(s)	570, 797
TaaI	ACNGT	3 cut(s)	155, 473, 693
TaiI	ACGT	1 cut(s)	274
TasI	AATT	6 cut(s)	290, 378, 407, 418, 732, 782
TatI	WGTACW	3 cut(s)	446, 618, 750
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	2 cut(s)	385, 665
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	160, 211
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	7 cut(s)	5, 125, 128, 349, 401, 452, 601
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	255, 599
TspRI	CASTG	2 cut(s)	160, 211
XapI	RAATTY	2 cut(s)	378, 782
XceI	RCATGY	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	570, 797
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.