Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Reverse (-)

13364743 .. 13366132

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTGGTTATCACCATCGCCTCCTTTATCTGCTATACAGTACATTTCTTAATTTCAGGTTCTAGTTTAACTTCCATGGCTGCTATGAGTACTACTTTTTGCACAGATTGGGGGTCTCTTCAGCTTCTCAGTAACATCCATAGCCCTAACCCAGACTATGATCACATGTTTAGCTTCCAGACCCAACAGGATGAGCTGGCAGCAGCAAGAATCTTGGGTCTGGACTACAGCTTAGCTCTTGATGATCCAAACCCACTACTTCTCTCCCAAACATTGTTCAGTGACCAAGAATTCCTCCTTCCTCTTGACGATCATGAATACTATTATCATGATGAGTACCCAAAACGTCAAAAGACCCATCAACAATTCCATTCCAGCTTCAATGGTTTTGTACCAAGTCCAAGTATGATACCGGAGTTCGTGCAGCCTCAGCTACCTTTGCCCCCTCCTGAAATTCAGATTCAACAGCAGTCAGCAGCCCAATTGTATGCTAATTGTAGACTAAGCAATAAGGATATTAGTACTGCTGCTAAAGTGAAGGCCAACAGTAATGGAGGAGTGAGCTTGTCTCCACAGAGCATTGCGGCCCGCGAGAGGAGGAGGAGGATAACAGAGAAGACTAATGAGCTTGGGAGGCTGGTTCCTAGTGGAAGCAAGATGAATACTGCTGAAATGCTGCAAGCTGCTTATAAGTACATTAAGTTCTTGCAGGCACAAGTTGCAATGCTCAAACTCATGGATTCAATGCAGGAAAAGAAAGGCCAACGGTTGCATAATCAGGAAGGTCTTCAAGTTCTTGCATCCCCAATTGTTCAGGAGAAGTTGTACTCAGAAGAAAAGTGCTTGGTTTCAAGAGAATTTGTTGAAACCCTAGCAAATAATCAAGACATCCAATCAAAGCCATTGCTCAAGGACAACATTGCTAAGTTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

311

Amino Acids

35.08

Weight (kDa)

6.07

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	196 - 237	1.2e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
AccI	GTMKAC	1 cut(s)	499
AccII	CGCG	1 cut(s)	591
AciI	CCGC	2 cut(s)	584, 589
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	3 cut(s)	290, 453, 857
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	7 cut(s)	42, 91, 338, 393, 523, 695, 827
AfiI	CCNNNNNNNGG	1 cut(s)	594
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	6 cut(s)	382, 464, 744, 791, 852, 866
Alw26I	GTCTC	2 cut(s)	120, 573
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	3 cut(s)	540, 585, 760
ApeKI	GCWGC	8 cut(s)	80, 200, 203, 424, 476, 527, 676, 683
ApoI	RAATTY	3 cut(s)	290, 453, 857
Asp700I	GAANNNNTTC	1 cut(s)	786
AspS9I	GGNCC	1 cut(s)	586
AsuHPI	GGTGA	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BbsI	GAAGAC	2 cut(s)	623, 779
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	8 cut(s)	67, 212, 215, 436, 488, 514, 663, 670
BccI	CCATC	2 cut(s)	23, 366
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	120, 573
BfaI	CTAG	3 cut(s)	63, 645, 872
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	9 cut(s)	81, 201, 204, 425, 477, 528, 585, 677, 684
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	9 cut(s)	82, 202, 205, 426, 478, 529, 586, 678, 685
BmcAI	AGTACT	2 cut(s)	91, 523
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	642
BmsI	GCATC	1 cut(s)	809
BpiI	GAAGAC	2 cut(s)	623, 779
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	893
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse3DI	GCAATG	4 cut(s)	579, 729, 902, 918
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	4 cut(s)	135, 196, 800, 888
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseMI	GCAATG	4 cut(s)	579, 729, 902, 918
BseMII	CTCAG	3 cut(s)	142, 443, 843
BseRI	GAGGAG	4 cut(s)	570, 610, 613, 616
BseXI	GCAGC	8 cut(s)	67, 212, 215, 436, 488, 514, 663, 670
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	542, 587, 762
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmAI	GTCTC	2 cut(s)	120, 573
BsnI	GGCC	3 cut(s)	542, 587, 762
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	160, 244, 310
Bsp1720I	GCTNAGC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	2 cut(s)	584, 589
BspANI	GGCC	3 cut(s)	542, 587, 762
BspCNI	CTCAG	3 cut(s)	141, 442, 842
BspFNI	CGCG	1 cut(s)	591
BspHI	TCATGA	2 cut(s)	313, 328
BspLI	GGNNCC	1 cut(s)	642
BspPI	GGATC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	4 cut(s)	579, 729, 902, 918
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	160, 244, 310
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	3 cut(s)	40, 548, 768
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	198, 589, 681, 711
BstDEI	CTNAG	6 cut(s)	128, 232, 429, 503, 829, 924
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	4 cut(s)	135, 196, 800, 888
BstFNI	CGCG	1 cut(s)	591
BstKTI	GATC	3 cut(s)	163, 247, 313
BstMAI	GTCTC	2 cut(s)	120, 573
BstMBI	GATC	3 cut(s)	160, 244, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	430, 439, 634, 719
BstNSI	RCATGY	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	8 cut(s)	67, 212, 215, 436, 488, 514, 663, 670
BstV2I	GAAGAC	2 cut(s)	623, 779
BsuRI	GGCC	3 cut(s)	542, 587, 762
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	135, 196, 800, 888
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	4 cut(s)	198, 589, 681, 711
CciI	TCATGA	2 cut(s)	313, 328
Cfr13I	GGNCC	1 cut(s)	586
Csp6I	GTAC	7 cut(s)	41, 90, 337, 392, 522, 694, 826
CviAII	CATG	5 cut(s)	76, 166, 314, 329, 736
CviQI	GTAC	7 cut(s)	41, 90, 337, 392, 522, 694, 826
DdeI	CTNAG	6 cut(s)	128, 232, 429, 503, 829, 924
DpnI	GATC	3 cut(s)	162, 246, 312
DpnII	GATC	3 cut(s)	160, 244, 310
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	5 cut(s)	79, 169, 317, 332, 739
FatI	CATG	5 cut(s)	75, 165, 313, 328, 735
FauI	CCCGC	1 cut(s)	596
FbaI	TGATCA	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	9 cut(s)	81, 201, 204, 425, 477, 528, 585, 677, 684
FokI	GGATG	4 cut(s)	122, 203, 787, 875
Fsp4HI	GCNGC	9 cut(s)	81, 201, 204, 425, 477, 528, 585, 677, 684
FspBI	CTAG	3 cut(s)	63, 645, 872
GluI	GCNGC	9 cut(s)	81, 201, 204, 425, 477, 528, 585, 677, 684
HaeIII	GGCC	3 cut(s)	542, 587, 762
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	5 cut(s)	79, 169, 317, 332, 739
HinfI	GANTC	3 cut(s)	210, 460, 740
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	459, 832
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	3 cut(s)	308, 532, 776
HpyCH4III	ACNGT	3 cut(s)	40, 548, 768
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	8 cut(s)	102, 424, 679, 709, 722, 748, 772, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	430, 439, 634, 719
HpyF3I	CTNAG	6 cut(s)	128, 232, 429, 503, 829, 924
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	5 cut(s)	79, 169, 317, 332, 739
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	160, 244, 310
Lsp1109I	GCAGC	8 cut(s)	67, 212, 215, 436, 488, 514, 663, 670
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	3 cut(s)	63, 645, 872
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	131, 281
MalI	GATC	3 cut(s)	162, 246, 312
MboI	GATC	3 cut(s)	160, 244, 310
MboII	GAAGA	4 cut(s)	110, 628, 779, 845
MfeI	CAATTG	2 cut(s)	482, 807
MluCI	AATT	8 cut(s)	51, 290, 365, 453, 482, 493, 807, 857
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	3 cut(s)	50, 68, 699
MspI	CCGG	1 cut(s)	413
MunI	CAATTG	2 cut(s)	482, 807
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	4 cut(s)	430, 439, 634, 719
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	160, 244, 310
NlaIII	CATG	5 cut(s)	79, 169, 317, 332, 739
NlaIV	GGNNCC	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	169
PagI	TCATGA	2 cut(s)	313, 328
PciI	ACATGT	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	3 cut(s)	210, 460, 740
PkrI	GCNGC	9 cut(s)	82, 202, 205, 426, 478, 529, 586, 678, 685
PscI	ACATGT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	642
PspPI	GGNCC	1 cut(s)	586
PsrI	GAACNNNNNNTAC	2 cut(s)	686, 718
RsaI	GTAC	7 cut(s)	42, 91, 338, 393, 523, 695, 827
RsaNI	GTAC	7 cut(s)	41, 90, 337, 392, 522, 694, 826
SaqAI	TTAA	3 cut(s)	50, 68, 699
SatI	GCNGC	9 cut(s)	81, 201, 204, 425, 477, 528, 585, 677, 684
Sau3AI	GATC	3 cut(s)	160, 244, 310
Sau96I	GGNCC	1 cut(s)	586
ScaI	AGTACT	2 cut(s)	91, 523
SfaNI	GCATC	1 cut(s)	809
SfcI	CTRYAG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
Sse9I	AATT	8 cut(s)	51, 290, 365, 453, 482, 493, 807, 857
SsiI	CCGC	2 cut(s)	584, 589
SspMI	CTAG	3 cut(s)	63, 645, 872
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	40, 548, 768
TaiI	ACGT	1 cut(s)	349
TasI	AATT	8 cut(s)	51, 290, 365, 453, 482, 493, 807, 857
TatI	WGTACW	5 cut(s)	40, 89, 521, 693, 825
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	3 cut(s)	210, 460, 740
Tru1I	TTAA	3 cut(s)	50, 68, 699
Tru9I	TTAA	3 cut(s)	50, 68, 699
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	8 cut(s)	80, 200, 203, 424, 476, 527, 676, 683
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	330, 674
TspRI	CASTG	1 cut(s)	286
XapI	RAATTY	3 cut(s)	290, 453, 857
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	3 cut(s)	63, 645, 872
ZrmI	AGTACT	2 cut(s)	91, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.