Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Forward (+)

9290244 .. 9291854

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTCTTGAACTGGGAAGCAGTACCTGAGTTTTTCGACTCAGACATGACTTGTATCCAGCAGAATCTAGAAGCAGAGCTAGTAGGAGACTTCCTTCAATGTGTTAATGCAGACTATTCCAATCCCCACAACTTTCTTGACCCATGGTATGACACTTGCAGTCTTGTCAACTTCGAATACCCTGGCTTTGATCATCTGCATCCACCTTCTTCTTTCAAACCTGACATGTTTCCAGTACAAGATTTTGAACCCTACGCTCTCCCGAAACGCCAAAAATGCTCGAAAGATTACCAGTACCCGGATCTTACACCCGGTTTCTCTAGTGCTTTTGTTCCGAACCCATGTCCTCGGCCCGAGTACTTCCCCGGGGCTTTTACTGCTCCGGCGCTCGACTTTCAGCATGCGGAGGTTGTTGATGGTAGTACCAGAAAACATATTGTTGAAAATGTGGGGAAGAAAGTGGAAGAAAGAAGTGTATCGCCGCAAAGTATCGCGGCAAGAGAAAGGAGGAGGAAGATCACGGAGAAGACTCAAGAGCTAGGGAAGCTTGTTCCTGGAGGAAGCAAGATGAACACAGCTGAGATGCTCACTGCTGCTTACAGCTACGTCAAGTTCTTGCAGGCTCAGATGGGGATTCTCCAGTTCATGGGGTCCTTTCAGGAGGTGAAGGCAGCCACGGCCACTAAGGTACTTCATGTTGCTGCGTCTCCTACTATACAAGAGAAGCTATATATGGGGCAGAAGTGCTTGGTCCCAAAGGAGTTTGTGGAGGTATTAGCAAACTATTTTGATGCTCAATCGAAACTTTCACTCTCCCACAAACTCATTCAGCTGCTTGTAATTTTTATCTTCAGGATTCTGTTTCATTATCATTTTTATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

295

Amino Acids

33.57

Weight (kDa)

6.15

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	646
AccII	CGCG	1 cut(s)	494
AciI	CCGC	3 cut(s)	404, 482, 494
AclWI	GGATC	1 cut(s)	309
AcoI	YGGCCR	1 cut(s)	678
AcuI	CTGAAG	1 cut(s)	835
AfaI	GTAC	6 cut(s)	24, 237, 296, 359, 424, 690
AfiI	CCNNNNNNNGG	2 cut(s)	298, 646
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	5 cut(s)	10, 98, 217, 248, 443
AjnI	CCWGG	2 cut(s)	181, 553
AluBI	AGCT	7 cut(s)	79, 538, 547, 578, 603, 727, 832
AluI	AGCT	7 cut(s)	79, 538, 547, 578, 603, 727, 832
Alw26I	GTCTC	2 cut(s)	81, 711
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	2 cut(s)	353, 365
AoxI	GGCC	2 cut(s)	350, 678
ApeKI	GCWGC	4 cut(s)	593, 671, 701, 832
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	351, 651, 751
AsuC2I	CCSGG	4 cut(s)	299, 312, 366, 367
AsuHPI	GGTGA	1 cut(s)	676
AsuII	TTCGAA	1 cut(s)	174
AvaI	CYCGRG	2 cut(s)	353, 365
AvaII	GGWCC	2 cut(s)	651, 751
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	4 cut(s)	580, 683, 688, 819
BccI	CCATC	2 cut(s)	410, 622
BceAI	ACGGC	1 cut(s)	693
BciT130I	CCWGG	2 cut(s)	183, 555
BciVI	GTATCC	1 cut(s)	65
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	4 cut(s)	299, 312, 366, 367
BcoDI	GTCTC	2 cut(s)	81, 711
BfaI	CTAG	4 cut(s)	68, 80, 321, 539
BfoI	RGCGCY	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	6 cut(s)	482, 495, 594, 672, 702, 833
BlsI	GCNGC	6 cut(s)	483, 496, 595, 673, 703, 834
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	6 cut(s)	183, 299, 312, 366, 367, 555
Bme18I	GGWCC	2 cut(s)	651, 751
BmeT110I	CYCGRG	2 cut(s)	353, 365
BmgT120I	GGNCC	3 cut(s)	351, 651, 751
BmiI	GGNNCC	2 cut(s)	652, 753
BmrFI	CCNGG	6 cut(s)	183, 299, 312, 366, 367, 555
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	3 cut(s)	208, 573, 781
BmuI	ACTGGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	2 cut(s)	576, 623
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	516
BpuMI	CCSGG	4 cut(s)	299, 312, 366, 367
Bsa29I	ATCGAT	1 cut(s)	880
BsaJI	CCNNGG	7 cut(s)	143, 181, 347, 364, 365, 366, 675
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 646
Bse1I	ACTGG	4 cut(s)	17, 233, 292, 640
BseBI	CCWGG	2 cut(s)	183, 555
BseCI	ATCGAT	1 cut(s)	880
BseDI	CCNNGG	7 cut(s)	143, 181, 347, 364, 365, 366, 675
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	298, 646
BseMII	CTCAG	4 cut(s)	18, 54, 570, 638
BseNI	ACTGG	4 cut(s)	17, 233, 292, 640
BseRI	GAGGAG	1 cut(s)	523
BseXI	GCAGC	4 cut(s)	580, 683, 688, 819
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	352, 680
BshVI	ATCGAT	1 cut(s)	880
BsiHKCI	CYCGRG	2 cut(s)	353, 365
BsiSI	CCGG	4 cut(s)	299, 312, 366, 383
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	2 cut(s)	298, 646
BsmAI	GTCTC	2 cut(s)	81, 711
BsmBI	CGTCTC	1 cut(s)	711
BsmFI	GGGAC	1 cut(s)	737
BsnI	GGCC	2 cut(s)	352, 680
BsoBI	CYCGRG	2 cut(s)	353, 365
Bsp119I	TTCGAA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	190, 301, 516
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	3 cut(s)	404, 482, 494
BspANI	GGCC	2 cut(s)	352, 680
BspCNI	CTCAG	4 cut(s)	19, 53, 571, 637
BspDI	ATCGAT	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	2 cut(s)	652, 753
BspPI	GGATC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	174
BsrI	ACTGG	4 cut(s)	17, 233, 292, 640
BssECI	CCNNGG	7 cut(s)	143, 181, 347, 364, 365, 366, 675
BssMI	GATC	3 cut(s)	190, 301, 516
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	2 cut(s)	183, 555
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	402, 621
BstDEI	CTNAG	5 cut(s)	27, 40, 579, 624, 684
BstDSI	CCRYGG	2 cut(s)	143, 675
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	494
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	3 cut(s)	193, 304, 519
BstMAI	GTCTC	2 cut(s)	81, 711
BstMBI	GATC	3 cut(s)	190, 301, 516
BstMWI	GCNNNNNNNGC	4 cut(s)	276, 377, 544, 677
BstNI	CCWGG	2 cut(s)	183, 555
BstNSI	RCATGY	2 cut(s)	229, 404
BstSCI	CCNGG	6 cut(s)	181, 297, 310, 364, 365, 553
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	4 cut(s)	580, 683, 688, 819
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	880
BsuI	GTATCC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	352, 680
BsuTUI	ATCGAT	1 cut(s)	880
BtgI	CCRYGG	2 cut(s)	143, 675
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	402, 621
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	351, 651, 751
Cfr9I	CCCGGG	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	880
CseI	GACGC	1 cut(s)	693
Csp6I	GTAC	6 cut(s)	23, 236, 295, 358, 423, 689
CviAII	CATG	7 cut(s)	46, 144, 226, 342, 401, 646, 695
CviQI	GTAC	6 cut(s)	23, 236, 295, 358, 423, 689
DdeI	CTNAG	5 cut(s)	27, 40, 579, 624, 684
DpnI	GATC	3 cut(s)	192, 303, 518
DpnII	GATC	3 cut(s)	190, 301, 516
EaeI	YGGCCR	1 cut(s)	678
Eco130I	CCWWGG	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	651, 751
Eco57I	CTGAAG	1 cut(s)	835
Eco88I	CYCGRG	2 cut(s)	353, 365
EcoO109I	RGGNCCY	1 cut(s)	651
EcoRII	CCWGG	2 cut(s)	181, 553
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	711
FaeI	CATG	7 cut(s)	49, 147, 229, 345, 404, 649, 698
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	7 cut(s)	45, 143, 225, 341, 400, 645, 694
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	6 cut(s)	482, 495, 594, 672, 702, 833
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	6 cut(s)	482, 495, 594, 672, 702, 833
FspBI	CTAG	4 cut(s)	68, 80, 321, 539
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	6 cut(s)	482, 495, 594, 672, 702, 833
GsuI	CTGGAG	2 cut(s)	576, 623
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	352, 680
HapII	CCGG	4 cut(s)	299, 312, 366, 383
HgaI	GACGC	1 cut(s)	693
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	7 cut(s)	49, 147, 229, 345, 404, 649, 698
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	5 cut(s)	38, 64, 529, 634, 856
HpaII	CCGG	4 cut(s)	299, 312, 366, 383
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	43, 336, 627
Hpy188III	TCNNGA	7 cut(s)	7, 68, 137, 262, 533, 659, 853
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	104, 216, 661
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	4 cut(s)	110, 159, 199, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	276, 377, 544, 677
HpyF3I	CTNAG	5 cut(s)	27, 40, 579, 624, 684
HpySE526I	ACGT	1 cut(s)	606
Hsp92II	CATG	7 cut(s)	49, 147, 229, 345, 404, 649, 698
HspAI	GCGC	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	190, 301, 516
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	4 cut(s)	580, 683, 688, 819
LweI	GCATC	3 cut(s)	208, 573, 781
MaeI	CTAG	4 cut(s)	68, 80, 321, 539
MaeII	ACGT	1 cut(s)	606
MalI	GATC	3 cut(s)	192, 303, 518
MboI	GATC	3 cut(s)	190, 301, 516
MboII	GAAGA	6 cut(s)	201, 466, 476, 526, 538, 841
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	1 cut(s)	840
MlyI	GAGTC	2 cut(s)	32, 523
MnlI	CCTC	7 cut(s)	357, 400, 501, 504, 551, 655, 763
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	2 cut(s)	578, 832
MspI	CCGG	4 cut(s)	299, 312, 366, 383
MspR9I	CCNGG	6 cut(s)	183, 299, 312, 366, 367, 555
MvaI	CCWGG	2 cut(s)	183, 555
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	276, 377, 544, 677
NciI	CCSGG	4 cut(s)	299, 312, 366, 367
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	3 cut(s)	190, 301, 516
NlaIII	CATG	7 cut(s)	49, 147, 229, 345, 404, 649, 698
NlaIV	GGNNCC	2 cut(s)	652, 753
NmeAIII	GCCGAG	1 cut(s)	328
NspI	RCATGY	2 cut(s)	229, 404
NspV	TTCGAA	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	404
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	64, 634, 856
PflMI	CCANNNNNTGG	1 cut(s)	646
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	6 cut(s)	483, 496, 595, 673, 703, 834
PleI	GAGTC	2 cut(s)	32, 523
PpsI	GAGTC	2 cut(s)	32, 523
PpuMI	RGGWCCY	1 cut(s)	651
PscI	ACATGT	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	181, 553
PspGI	CCWGG	2 cut(s)	181, 553
PspN4I	GGNNCC	2 cut(s)	652, 753
PspPI	GGNCC	3 cut(s)	351, 651, 751
PspPPI	RGGWCCY	1 cut(s)	651
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	2 cut(s)	578, 832
RsaI	GTAC	6 cut(s)	24, 237, 296, 359, 424, 690
RsaNI	GTAC	6 cut(s)	23, 236, 295, 358, 423, 689
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	6 cut(s)	482, 495, 594, 672, 702, 833
Sau3AI	GATC	3 cut(s)	190, 301, 516
Sau96I	GGNCC	3 cut(s)	351, 651, 751
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	2 cut(s)	32, 523
ScrFI	CCNGG	6 cut(s)	183, 299, 312, 366, 367, 555
SfaNI	GCATC	3 cut(s)	208, 573, 781
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	2 cut(s)	651, 751
SmaI	CCCGGG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	1 cut(s)	840
SsiI	CCGC	3 cut(s)	404, 482, 494
SspMI	CTAG	4 cut(s)	68, 80, 321, 539
StyD4I	CCNGG	6 cut(s)	181, 297, 310, 364, 365, 553
StyI	CCWWGG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	6 cut(s)	36, 174, 281, 390, 800, 880
TasI	AATT	1 cut(s)	840
TatI	WGTACW	2 cut(s)	235, 357
TauI	GCSGC	2 cut(s)	484, 497
TfiI	GAWTC	3 cut(s)	64, 634, 856
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	4 cut(s)	593, 671, 701, 832
TspDTI	ATGAA	4 cut(s)	584, 634, 683, 854
TspGWI	ACGGA	1 cut(s)	536
TspMI	CCCGGG	1 cut(s)	365
TspRI	CASTG	1 cut(s)	595
Van91I	CCANNNNNTGG	1 cut(s)	646
VpaK11BI	GGWCC	2 cut(s)	651, 751
XbaI	TCTAGA	1 cut(s)	67
XceI	RCATGY	2 cut(s)	229, 404
XmaI	CCCGGG	1 cut(s)	365
XspI	CTAG	4 cut(s)	68, 80, 321, 539
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.