Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003767

Physical Location & Seq

Genomic Coordinates Reverse (-)

26423084 .. 26424219

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTATGAGTACTGCTACTTTTTGCCCTATTGATGATTGGGGGTCTCTTCAGCTTCTCAACCCACCAGAAATGAATATGCTTAGCTTACCAACACAACAAAAGCTGCAGGCAGCTTCTTCGGGCATCTTCGATCTGCAGGACTACTACTATAGCTTAGCTAACAGTACTAATCCAGAATACACCTGCATCGATCCATTCTTCCAACCCTACAAATCCTCCTCTGAAAACTTTCTCCTCCCTGATTTTTGTTCTCCAACAGATAACATCAATTTGGCCTTGCTGTCGCCGGAAACCTGTCCAACCCTAGATGAATATGACTTCTCCTACCAGCCCTACCCAAAATGCCAGAAGCTCTTCCATGATCAACAAGTCCAATATTGCAATTCAAACTTCGTGGTTGCCGCCACTCCCAATTATTTCAATGCATATGATCCGTTCCTCCAGTCTGAAATTTTGGTTCCAACTCAAACCCATGAAGTCCAAATTCAGAATCAGCCTGAGGCCGCCAAGCTTGATAATAAGGTCGTCAGTGGTACTGGTACCGTGTCACCACAGAGCATAGCTGCACGCGAGAGGAGGAGGAAGATAACTGAGAAGACTCAGGAGCTTGGGAGGCTGATTCCTGGTGCCACCAAGATGAACACTGCTGAAATGTTGCAAGCTGCTTATAAGTATGTCAAGTTCTTGCGGGCACAAGTTTCTGTTCTCAAACTCATGACAGACTCTCCAATTCAGCAGGTTGTTGCATCCCCAATTATTCAAGAGAAGCTCTACTCTGAAGAGAAGTGCTTGGTTTTGAAGGAGTTTGTTGAAGTGCTGGCAAAAGATGATGACATCCAATCCAAACCCTTGCTCAAAGACAAAGTTGCTCAGTTGCTGCAAACAAACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

299

Amino Acids

33.61

Weight (kDa)

4.86

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30670 AT2G34820
fragaria_vesca	FvH4_3g11190 FvH4_3g14980 FvH4_3g14980
malus_domestica	MD05G1228100.v1.1 MD05G1228800.v1.1 MD05G1265500.v1.1 MD10G1243500.v1.1
prunus_persica	Prupe.4G100400_v2.0.a1 Prupe.4G134200_v2.0.a1
pyrus_communis	pycom05g24960
rosa_chinensis	RchiOBHm_Chr5g0018101 RchiOBHm_Chr5g0024601
rosa_laevigata	RLG00000032340 RLG00000032809
rosa_multiflora	Rmu_sc0005699.1_g000003 Rmu_sc0010280.1_g000020 Rmu_sc0016842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054660 Rroxscaffold_1G00059520
rosa_rugosa	Rorug05G0040500.1 Rorug05G0040600 Rorug05G0084300
rosa_samantha	Rh5AG133200 Rh5AG176000 Rh5BG131800 Rh5BG173300 Rh5CG143800 Rh5CG189300 Rh5DG133500 Rh5DG174900
rosa_wichuraiana	Rw5G011610 Rw5G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	2 cut(s)	194, 730
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	2 cut(s)	542, 629
AccII	CGCG	1 cut(s)	573
AciI	CCGC	3 cut(s)	405, 507, 691
AclWI	GGATC	2 cut(s)	188, 428
AcsI	RAATTY	2 cut(s)	453, 486
AcuI	CTGAAG	2 cut(s)	35, 801
AfaI	GTAC	4 cut(s)	13, 169, 538, 544
AgsI	TTSAA	5 cut(s)	390, 424, 764, 802, 815
AjnI	CCWGG	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	188, 428
AlwNI	CAGNNNCTG	1 cut(s)	880
AoxI	GGCC	2 cut(s)	276, 504
ApeKI	GCWGC	5 cut(s)	106, 113, 566, 665, 880
ApoI	RAATTY	2 cut(s)	453, 486
Asp700I	GAANNNNTTC	2 cut(s)	231, 356
Asp718I	GGTACC	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	543
AxyI	CCTNAGG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	697
BanI	GGYRCC	2 cut(s)	542, 629
BbsI	GAAGAC	1 cut(s)	605
BbvI	GCAGC	5 cut(s)	93, 125, 553, 652, 867
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	1 cut(s)	627
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	3 cut(s)	107, 137, 151
BfuAI	ACCTGC	2 cut(s)	194, 730
BisI	GCNGC	7 cut(s)	107, 114, 405, 507, 567, 666, 881
BlpI	GCTNAGC	2 cut(s)	83, 157
BlsI	GCNGC	7 cut(s)	108, 115, 406, 508, 568, 667, 882
BmcAI	AGTACT	2 cut(s)	13, 169
Bme1390I	CCNGG	1 cut(s)	627
BmiI	GGNNCC	3 cut(s)	462, 544, 631
BmrFI	CCNGG	1 cut(s)	627
BmsI	GCATC	3 cut(s)	135, 198, 758
BpiI	GAAGAC	1 cut(s)	605
BpmI	CTGGAG	1 cut(s)	428
Bpu1102I	GCTNAGC	2 cut(s)	83, 157
Bsa29I	ATCGAT	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	51
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 712, 742
Bse1I	ACTGG	2 cut(s)	445, 544
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	627
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	2 cut(s)	749, 837
BseMII	CTCAG	4 cut(s)	492, 585, 617, 887
BseNI	ACTGG	2 cut(s)	445, 544
BseRI	GAGGAG	4 cut(s)	211, 227, 592, 595
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	5 cut(s)	93, 125, 553, 652, 867
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	2 cut(s)	278, 506
BshNI	GGYRCC	2 cut(s)	542, 629
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	278, 506
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	4 cut(s)	133, 193, 364, 433
Bsp1720I	GCTNAGC	2 cut(s)	83, 157
BspACI	CCGC	3 cut(s)	405, 507, 691
BspANI	GGCC	2 cut(s)	278, 506
BspCNI	CTCAG	4 cut(s)	493, 586, 616, 886
BspDI	ATCGAT	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	3 cut(s)	462, 544, 631
BspMAI	CTGCAG	2 cut(s)	111, 141
BspMI	ACCTGC	2 cut(s)	194, 730
BspPI	GGATC	2 cut(s)	188, 428
BspQI	GCTCTTC	1 cut(s)	362
BspT107I	GGYRCC	2 cut(s)	542, 629
BspTNI	GGTCTC	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	445, 544
BssMI	GATC	4 cut(s)	133, 193, 364, 433
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	2 cut(s)	167, 547
Bst6I	CTCTTC	3 cut(s)	54, 362, 777
BstC8I	GCNNGC	5 cut(s)	111, 571, 663, 693, 822
BstDEI	CTNAG	6 cut(s)	83, 157, 501, 594, 603, 873
BstF5I	GGATG	2 cut(s)	749, 837
BstFNI	CGCG	1 cut(s)	573
BstKTI	GATC	4 cut(s)	136, 196, 367, 436
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	4 cut(s)	133, 193, 364, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	616
BstNI	CCWGG	1 cut(s)	627
BstSCI	CCNGG	1 cut(s)	625
BstSFI	CTRYAG	3 cut(s)	107, 137, 151
BstSLI	GKGCMC	1 cut(s)	697
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	5 cut(s)	93, 125, 553, 652, 867
BstV2I	GAAGAC	1 cut(s)	605
Bsu15I	ATCGAT	1 cut(s)	192
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	278, 506
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	749, 837
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	538, 645
BveI	ACCTGC	2 cut(s)	194, 730
Cac8I	GCNNGC	5 cut(s)	111, 571, 663, 693, 822
CaiI	CAGNNNCTG	1 cut(s)	880
CciI	TCATGA	1 cut(s)	717
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	4 cut(s)	12, 168, 537, 543
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	3 cut(s)	362, 476, 718
CviQI	GTAC	4 cut(s)	12, 168, 537, 543
DdeI	CTNAG	6 cut(s)	83, 157, 501, 594, 603, 873
DpnI	GATC	4 cut(s)	135, 195, 366, 435
DpnII	GATC	4 cut(s)	133, 193, 364, 433
Eam1104I	CTCTTC	3 cut(s)	54, 362, 777
EarI	CTCTTC	3 cut(s)	54, 362, 777
Eco31I	GGTCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	35, 801
Eco81I	CCTNAGG	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	430
FaeI	CATG	3 cut(s)	365, 479, 721
FatI	CATG	3 cut(s)	361, 475, 717
FauI	CCCGC	1 cut(s)	684
FauNDI	CATATG	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	7 cut(s)	107, 114, 405, 507, 567, 666, 881
FokI	GGATG	2 cut(s)	736, 824
Fsp4HI	GCNGC	7 cut(s)	107, 114, 405, 507, 567, 666, 881
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	7 cut(s)	107, 114, 405, 507, 567, 666, 881
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	278, 506
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	3 cut(s)	365, 479, 721
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	4 cut(s)	493, 601, 622, 725
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	543
Hpy188I	TCNGA	4 cut(s)	226, 451, 492, 781
Hpy188III	TCNNGA	4 cut(s)	176, 605, 718, 764
HpyAV	CCTTC	1 cut(s)	796
HpyCH4III	ACNGT	2 cut(s)	167, 547
HpyCH4V	TGCA	9 cut(s)	109, 139, 189, 384, 428, 569, 661, 749, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	616
HpyF3I	CTNAG	6 cut(s)	83, 157, 501, 594, 603, 873
Hsp92II	CATG	3 cut(s)	365, 479, 721
KpnI	GGTACC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	133, 193, 364, 433
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	5 cut(s)	93, 125, 553, 652, 867
LweI	GCATC	3 cut(s)	135, 198, 758
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	4 cut(s)	135, 195, 366, 435
MboI	GATC	4 cut(s)	133, 193, 364, 433
MboII	GAAGA	8 cut(s)	41, 111, 121, 193, 349, 598, 610, 794
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	7 cut(s)	271, 385, 415, 453, 486, 732, 756
MlyI	GAGTC	2 cut(s)	595, 719
MmeI	TCCRAC	4 cut(s)	229, 281, 326, 488
MnlI	CCTC	9 cut(s)	229, 232, 248, 452, 496, 570, 573, 576, 609
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	2 cut(s)	231, 356
MslI	CAYNNNNRTG	1 cut(s)	638
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	1 cut(s)	616
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	4 cut(s)	133, 193, 364, 433
NlaIII	CATG	3 cut(s)	365, 479, 721
NlaIV	GGNNCC	3 cut(s)	462, 544, 631
NmuCI	GTSAC	1 cut(s)	549
NsiI	ATGCAT	1 cut(s)	430
PagI	TCATGA	1 cut(s)	717
PaqCI	CACCTGC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	362
PdmI	GAANNNNTTC	2 cut(s)	231, 356
PfeI	GAWTC	2 cut(s)	493, 622
PkrI	GCNGC	7 cut(s)	108, 115, 406, 508, 568, 667, 882
PleI	GAGTC	2 cut(s)	595, 719
PpsI	GAGTC	2 cut(s)	595, 719
PsiI	TTATAA	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	3 cut(s)	462, 544, 631
PsrI	GAACNNNNNNTAC	2 cut(s)	668, 700
PstI	CTGCAG	2 cut(s)	111, 141
PstNI	CAGNNNCTG	1 cut(s)	880
RsaI	GTAC	4 cut(s)	13, 169, 538, 544
RsaNI	GTAC	4 cut(s)	12, 168, 537, 543
RseI	CAYNNNNRTG	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	362
SatI	GCNGC	7 cut(s)	107, 114, 405, 507, 567, 666, 881
Sau3AI	GATC	4 cut(s)	133, 193, 364, 433
ScaI	AGTACT	2 cut(s)	13, 169
SchI	GAGTC	2 cut(s)	595, 719
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	3 cut(s)	135, 198, 758
SfcI	CTRYAG	3 cut(s)	107, 137, 151
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	7 cut(s)	271, 385, 415, 453, 486, 732, 756
SsiI	CCGC	3 cut(s)	405, 507, 691
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	625
TaaI	ACNGT	2 cut(s)	167, 547
TaqI	TCGA	2 cut(s)	132, 192
TasI	AATT	7 cut(s)	271, 385, 415, 453, 486, 732, 756
TatI	WGTACW	2 cut(s)	11, 167
TauI	GCSGC	2 cut(s)	407, 509
TfiI	GAWTC	2 cut(s)	493, 622
TscAI	CASTG	2 cut(s)	538, 652
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	5 cut(s)	106, 113, 566, 665, 880
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	4 cut(s)	89, 327, 492, 656
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	2 cut(s)	538, 652
XapI	RAATTY	2 cut(s)	453, 486
XmnI	GAANNNNTTC	2 cut(s)	231, 356
XspI	CTAG	1 cut(s)	308
ZrmI	AGTACT	2 cut(s)	13, 169
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.