AT1G30700

Reticuline oxidase-like protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10892445 .. 10894714
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30700.1

Sequence Viewer

Length: 1584 bp
ATGAAATATGCATTGATTCTTGTTCTCTTTTTTGTTGTCTTCATATGGCAATCAAGCTCATCATCAGCAAACTCGGAGACTTTCACACAATGCCTAACCTCAAACTCCGACCCCAAACATCCCATCTCCCCCGCTATCTTCTTCTCCGGAAATGGCTCCTACTCCTCCGTATTACAAGCCAACATCCGTAACCTCCGCTTCAACACCACCTCAACTCCGAAACCCTTCCTCATAATCGCCGCAACACATGAATCCCATGTGCAAGCCGCGATTACTTGCGGGAAACGCCACAACCTTCAGATGAAAATCAGAAGTGGAGGCCACGACTACGATGGCTTGTCATACGTTACATACTCTGGCAAACCGTTCTTCGTCCTCGACATGTTTAACCTCCGTTCGGTGGATGTCGACGTGGCAAGTAAGACCGCGTGGGTCCAAACCGGTGCCATACTCGGAGAAGTTTATTACTATATATGGGAGAAGAGCAAAACCCTAGCTTATCCCGCCGGAATTTGTCCCACGGTTGGTGTCGGTGGCCATATCAGTGGTGGAGGTTACGGTAACATGATGAGAAAATACGGTCTCACCGTAGATAATACCATCGATGCAAGAATGGTCGACGTAAATGGAAAAATTTTGGATAGAAAATTGATGGGAGAAGATCTCTACTGGGCAATAAACGGAGGAGGAGGAGGGAGCTACGGCGTCGTATTGGCCTACAAAATAAACCTTGTTGAAGTCCCAGAAAACGTCACCGTTTTCAGAATCTCCCGGACGTTAGAACAAAATGCGACGGATATCATTCACCGGTGGCAACAAGTTGCACCGAAGCTTCCCGACGAGCTTTTCATAAGAACAGTCATTGACGTAGTAAACGGCACTGTTTCATCTCAAAAGACCGTCAGGACAACATTCATAGCAATGTTTCTAGGAGACACGACAACTCTACTGTCGATATTAAACCGGAGATTCCCAGAATTGGGTTTGGTCCGGTCTGACTGTACCGAAACAAGCTGGATCCAATCTGTGCTATTCTGGACAAATATCCAAGTTGGTTCGTCGGAGACACTTCTACTCCAAAGGAATCAACCCGTGAACTACCTCAAGAGGAAATCAGATTACGTACGTGAACCGATTTCAAGAACCGGTTTAGAGTCAATTTGGAAGAAAATGATCGAGCTTGAAATTCCGACAATGGCTTTCAATCCATACGGTGGTGAGATGGGGAGGATATCATCTACGGTGACTCCGTTCCCATACAGAGCCGGTAATCTCTGGAAGATTCAGTACGGTGCGAATTGGAGAGATGAGACTTTAACCGACCGGTACATGGAATTGACGAGGAAGTTGTACCAATTCATGACACCATTTGTTTCCAAGAATCCGAGACAATCGTTTTTCAATTACCGTGATGTTGATTTGGGTATTAATTCTCATAATGGTAAAATCAGTAGTTATGTGGAAGGTAAACGTTACGGGAAGAAGTATTTCGCAGGTAATTTCGAGAGATTGGTGAAGATTAAGACGAGAGTTGATAGTGGTAATTTCTTTAGGAACGAACAGAGTATTCCTGTGTTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

59.51

Weight (kDa)

9.42

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 77 - 213 3.8e-24 FAD binding domain
BBE PF08031 465 - 524 8.4e-18 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1484
AccB1I GGYRCC 1 cut(s) 443
AccB7I CCANNNNNTGG 1 cut(s) 1214
AccI GTMKAC 2 cut(s) 408, 618
AccII CGCG 2 cut(s) 269, 428
AccIII TCCGGA 1 cut(s) 146
AciI CCGC 7 cut(s) 132, 196, 240, 267, 279, 426, 504
AclI AACGTT 1 cut(s) 1471
AclWI GGATC 2 cut(s) 1012, 1025
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 3 cut(s) 510, 633, 1185
AcuI CTGAAG 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 705
AfaI GTAC 5 cut(s) 1003, 1125, 1289, 1328, 1352
AfiI CCNNNNNNNGG 7 cut(s) 397, 400, 524, 979, 980, 1214, 1330
AflIII ACRYGT 1 cut(s) 381
AgeI ACCGGT 4 cut(s) 440, 807, 1145, 1323
AgsI TTSAA 6 cut(s) 202, 737, 1140, 1184, 1204, 1402
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 7 cut(s) 57, 497, 699, 832, 844, 1014, 1180
AluI AGCT 7 cut(s) 57, 497, 699, 832, 844, 1014, 1180
Alw26I GTCTC 6 cut(s) 71, 587, 927, 1058, 1304, 1381
AlwI GGATC 2 cut(s) 1012, 1025
Aor13HI TCCGGA 1 cut(s) 146
AoxI GGCC 3 cut(s) 319, 535, 714
ApoI RAATTY 3 cut(s) 510, 633, 1185
AseI ATTAAT 1 cut(s) 1428
AsiGI ACCGGT 4 cut(s) 440, 807, 1145, 1323
Asp700I GAANNNNTTC 2 cut(s) 224, 1487
AspS9I GGNCC 2 cut(s) 433, 988
AsuC2I CCSGG 1 cut(s) 772
AsuHPI GGTGA 6 cut(s) 577, 745, 797, 1229, 1255, 1525
AvaII GGWCC 2 cut(s) 433, 988
BalI TGGCCA 1 cut(s) 537
BamHI GGATCC 1 cut(s) 1017
BanI GGYRCC 1 cut(s) 443
BarI GAAGNNNNNNTAC 2 cut(s) 1271, 1303
BbsI GAAGAC 1 cut(s) 31
BccI CCATC 5 cut(s) 131, 326, 608, 646, 1216
BceAI ACGGC 2 cut(s) 718, 892
BcnI CCSGG 1 cut(s) 772
BcoDI GTCTC 6 cut(s) 71, 587, 927, 1058, 1304, 1381
BfaI CTAG 2 cut(s) 494, 929
BfuAI ACCTGC 1 cut(s) 1484
BglII AGATCT 1 cut(s) 661
BisI GCNGC 2 cut(s) 240, 267
BlsI GCNGC 2 cut(s) 241, 268
Bme1390I CCNGG 1 cut(s) 772
Bme18I GGWCC 2 cut(s) 433, 988
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 433, 988
BmiI GGNNCC 4 cut(s) 157, 434, 445, 1019
BmrFI CCNGG 1 cut(s) 772
BmrI ACTGGG 1 cut(s) 679
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 648, 680
BpuEI CTTGAG 1 cut(s) 1088
BpuMI CCSGG 1 cut(s) 772
Bsa29I ATCGAT 1 cut(s) 603
BsaAI YACGTR 2 cut(s) 1123, 1127
BsaBI GATNNNNATC 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 705
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 519
BsaWI WCCGGW 7 cut(s) 146, 440, 807, 963, 990, 1145, 1323
BsaXI ACNNNNNCTCC 6 cut(s) 199, 229, 1059, 1089, 1231, 1261
Bsc4I CCNNNNNNNGG 7 cut(s) 397, 400, 524, 979, 980, 1214, 1330
Bse118I RCCGGY 5 cut(s) 440, 807, 1145, 1265, 1323
Bse1I ACTGG 1 cut(s) 674
Bse3DI GCAATG 1 cut(s) 927
Bse8I GATNNNNATC 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 3 cut(s) 118, 183, 409
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 7 cut(s) 397, 400, 524, 979, 980, 1214, 1330
BseMI GCAATG 1 cut(s) 927
BseNI ACTGG 1 cut(s) 674
BseRI GAGGAG 4 cut(s) 154, 699, 702, 705
Bsh1236I CGCG 2 cut(s) 269, 428
Bsh1285I CGRYCG 1 cut(s) 1324
BshFI GGCC 3 cut(s) 321, 537, 716
BshNI GGYRCC 1 cut(s) 443
BshTI ACCGGT 4 cut(s) 440, 807, 1145, 1323
BshVI ATCGAT 1 cut(s) 603
BsiEI CGRYCG 1 cut(s) 1324
BsiWI CGTACG 1 cut(s) 1123
BslFI GGGAC 2 cut(s) 501, 725
BslI CCNNNNNNNGG 7 cut(s) 397, 400, 524, 979, 980, 1214, 1330
BsmAI GTCTC 6 cut(s) 71, 587, 927, 1058, 1304, 1381
BsmFI GGGAC 2 cut(s) 501, 725
BsnI GGCC 3 cut(s) 321, 537, 716
Bso31I GGTCTC 1 cut(s) 587
Bsp13I TCCGGA 1 cut(s) 146
Bsp143I GATC 3 cut(s) 661, 1017, 1173
BspACI CCGC 7 cut(s) 132, 196, 240, 267, 279, 426, 504
BspANI GGCC 3 cut(s) 321, 537, 716
BspDI ATCGAT 1 cut(s) 603
BspEI TCCGGA 1 cut(s) 146
BspFNI CGCG 2 cut(s) 269, 428
BspHI TCATGA 1 cut(s) 1359
BspLI GGNNCC 4 cut(s) 157, 434, 445, 1019
BspMI ACCTGC 1 cut(s) 1484
BspPI GGATC 2 cut(s) 1012, 1025
BspQI GCTCTTC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 927
BsrFI RCCGGY 5 cut(s) 440, 807, 1145, 1265, 1323
BsrI ACTGG 1 cut(s) 674
BssAI RCCGGY 5 cut(s) 440, 807, 1145, 1265, 1323
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 3 cut(s) 661, 1017, 1173
BssNI GRCGYC 1 cut(s) 705
Bst6I CTCTTC 1 cut(s) 476
BstACI GRCGYC 1 cut(s) 705
BstBAI YACGTR 2 cut(s) 1123, 1127
BstC8I GCNNGC 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 3 cut(s) 118, 183, 409
BstFNI CGCG 2 cut(s) 269, 428
BstKTI GATC 3 cut(s) 664, 1020, 1176
BstMAI GTCTC 6 cut(s) 71, 587, 927, 1058, 1304, 1381
BstMBI GATC 3 cut(s) 661, 1017, 1173
BstMCI CGRYCG 1 cut(s) 1324
BstMWI GCNNNNNNNGC 2 cut(s) 285, 503
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 770
BstSNI TACGTA 1 cut(s) 1123
BstUI CGCG 2 cut(s) 269, 428
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 661, 1017
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 2 cut(s) 661, 1017
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 3 cut(s) 321, 537, 716
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 1 cut(s) 519
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 3 cut(s) 118, 183, 409
BtsIMutI CAGTG 2 cut(s) 550, 879
BveI ACCTGC 1 cut(s) 1484
Cac8I GCNNGC 1 cut(s) 264
CciI TCATGA 1 cut(s) 1359
Cfr10I RCCGGY 5 cut(s) 440, 807, 1145, 1265, 1323
Cfr13I GGNCC 2 cut(s) 433, 988
ClaI ATCGAT 1 cut(s) 603
CseI GACGC 1 cut(s) 694
Csp6I GTAC 5 cut(s) 1002, 1124, 1288, 1327, 1351
CspAI ACCGGT 4 cut(s) 440, 807, 1145, 1323
CviAII CATG 6 cut(s) 248, 257, 382, 565, 1330, 1360
CviQI GTAC 5 cut(s) 1002, 1124, 1288, 1327, 1351
DpnI GATC 3 cut(s) 663, 1019, 1175
DpnII GATC 3 cut(s) 661, 1017, 1173
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
Eco105I TACGTA 1 cut(s) 1123
Eco31I GGTCTC 1 cut(s) 587
Eco32I GATATC 2 cut(s) 799, 1233
Eco47I GGWCC 2 cut(s) 433, 988
Eco57I CTGAAG 1 cut(s) 281
EcoRV GATATC 2 cut(s) 799, 1233
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 6 cut(s) 251, 260, 385, 568, 1333, 1363
FaqI GGGAC 2 cut(s) 501, 725
FatI CATG 6 cut(s) 247, 256, 381, 564, 1329, 1359
FauI CCCGC 3 cut(s) 139, 272, 511
FauNDI CATATG 1 cut(s) 44
FblI GTMKAC 2 cut(s) 408, 618
Fnu4HI GCNGC 2 cut(s) 240, 267
FokI GGATG 3 cut(s) 105, 170, 416
Fsp4HI GCNGC 2 cut(s) 240, 267
FspBI CTAG 2 cut(s) 494, 929
GluI GCNGC 2 cut(s) 240, 267
HaeIII GGCC 3 cut(s) 321, 537, 716
HgaI GACGC 1 cut(s) 694
Hin1I GRCGYC 1 cut(s) 705
Hin1II CATG 6 cut(s) 251, 260, 385, 568, 1333, 1363
HincII GTYRAC 2 cut(s) 409, 619
HindII GTYRAC 2 cut(s) 409, 619
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 9 cut(s) 16, 251, 765, 969, 1084, 1154, 1246, 1282, 1381
HphI GGTGA 6 cut(s) 577, 745, 797, 1229, 1255, 1525
Hpy166II GTNNAC 6 cut(s) 409, 619, 874, 1096, 1130, 1469
Hpy188III TCNNGA 9 cut(s) 147, 836, 904, 1036, 1105, 1140, 1276, 1360, 1504
Hpy8I GTNNAC 6 cut(s) 409, 619, 874, 1096, 1130, 1469
Hpy99I CGWCG 6 cut(s) 413, 623, 710, 796, 842, 1063
HpyAV CCTTC 3 cut(s) 235, 305, 1457
HpyCH4IV ACGT 9 cut(s) 345, 411, 621, 750, 776, 867, 1122, 1126, 1471
HpyCH4V TGCA 4 cut(s) 11, 262, 608, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 503
HpySE526I ACGT 9 cut(s) 345, 411, 621, 750, 776, 867, 1122, 1126, 1471
Hsp92I GRCGYC 1 cut(s) 705
Hsp92II CATG 6 cut(s) 251, 260, 385, 568, 1333, 1363
Kpn2I TCCGGA 1 cut(s) 146
Kzo9I GATC 3 cut(s) 661, 1017, 1173
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 2 cut(s) 161, 696
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 494, 929
MaeII ACGT 9 cut(s) 345, 411, 621, 750, 776, 867, 1122, 1126, 1471
MaeIII GTNAC 8 cut(s) 188, 346, 554, 560, 751, 1243, 1472, 1575
MalI GATC 3 cut(s) 663, 1019, 1175
MboI GATC 3 cut(s) 661, 1017, 1173
MflI RGATCY 2 cut(s) 661, 1017
MlsI TGGCCA 1 cut(s) 537
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 2 cut(s) 1163, 1240
MmeI TCCRAC 3 cut(s) 132, 1041, 1214
Mox20I TGGCCA 1 cut(s) 537
Mph1103I ATGCAT 1 cut(s) 13
MroI TCCGGA 1 cut(s) 146
MroXI GAANNNNTTC 2 cut(s) 224, 1487
MscI TGGCCA 1 cut(s) 537
MseI TTAA 5 cut(s) 387, 959, 1316, 1428, 1521
MslI CAYNNNNRTG 2 cut(s) 543, 920
Msp20I TGGCCA 1 cut(s) 537
MspR9I CCNGG 1 cut(s) 772
MvnI CGCG 2 cut(s) 269, 428
MwoI GCNNNNNNNGC 2 cut(s) 285, 503
NciI CCSGG 1 cut(s) 772
NdeI CATATG 1 cut(s) 44
NdeII GATC 3 cut(s) 661, 1017, 1173
NlaIII CATG 6 cut(s) 251, 260, 385, 568, 1333, 1363
NlaIV GGNNCC 4 cut(s) 157, 434, 445, 1019
NmuCI GTSAC 2 cut(s) 751, 1243
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 385
PagI TCATGA 1 cut(s) 1359
PciI ACATGT 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 476
PcsI WCGNNNNNNNCGW 2 cut(s) 585, 1247
PdmI GAANNNNTTC 2 cut(s) 224, 1487
PfeI GAWTC 7 cut(s) 16, 251, 765, 969, 1084, 1282, 1381
Pfl23II CGTACG 1 cut(s) 1123
PflMI CCANNNNNTGG 1 cut(s) 1214
PfoI TCCNGGA 1 cut(s) 770
PinAI ACCGGT 4 cut(s) 440, 807, 1145, 1323
PkrI GCNGC 2 cut(s) 241, 268
PleI GAGTC 2 cut(s) 1162, 1240
PpsI GAGTC 2 cut(s) 1162, 1240
Ppu21I YACGTR 2 cut(s) 1123, 1127
PscI ACATGT 1 cut(s) 381
PshBI ATTAAT 1 cut(s) 1428
Psp1406I AACGTT 1 cut(s) 1471
PspLI CGTACG 1 cut(s) 1123
PspN4I GGNNCC 4 cut(s) 157, 434, 445, 1019
PspPI GGNCC 2 cut(s) 433, 988
PsuI RGATCY 2 cut(s) 661, 1017
RsaI GTAC 5 cut(s) 1003, 1125, 1289, 1328, 1352
RsaNI GTAC 5 cut(s) 1002, 1124, 1288, 1327, 1351
RseI CAYNNNNRTG 2 cut(s) 543, 920
SalI GTCGAC 2 cut(s) 407, 617
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 5 cut(s) 387, 959, 1316, 1428, 1521
SatI GCNGC 2 cut(s) 240, 267
Sau3AI GATC 3 cut(s) 661, 1017, 1173
Sau96I GGNCC 2 cut(s) 433, 988
SchI GAGTC 2 cut(s) 1163, 1240
ScrFI CCNGG 1 cut(s) 772
SfaNI GCATC 1 cut(s) 595
SgrAI CRCCGGYG 1 cut(s) 807
SinI GGWCC 2 cut(s) 433, 988
SmiMI CAYNNNNRTG 2 cut(s) 543, 920
SmlI CTYRAG 1 cut(s) 1103
SmoI CTYRAG 1 cut(s) 1103
SnaBI TACGTA 1 cut(s) 1123
SsiI CCGC 7 cut(s) 132, 196, 240, 267, 279, 426, 504
SspMI CTAG 2 cut(s) 494, 929
StyD4I CCNGG 1 cut(s) 770
TaiI ACGT 9 cut(s) 348, 414, 624, 753, 779, 870, 1125, 1129, 1474
TaqI TCGA 7 cut(s) 378, 408, 603, 618, 953, 1176, 1503
TauI GCSGC 2 cut(s) 242, 269
TfiI GAWTC 7 cut(s) 16, 251, 765, 969, 1084, 1282, 1381
Tru1I TTAA 5 cut(s) 387, 959, 1316, 1428, 1521
Tru9I TTAA 5 cut(s) 387, 959, 1316, 1428, 1521
TscAI CASTG 2 cut(s) 550, 886
TseFI GTSAC 2 cut(s) 751, 1243
Tsp45I GTSAC 2 cut(s) 751, 1243
TspDTI ATGAA 8 cut(s) 17, 31, 264, 317, 838, 876, 904, 1348
TspGWI ACGGA 6 cut(s) 157, 176, 383, 696, 809, 1239
TspRI CASTG 2 cut(s) 550, 886
Van91I CCANNNNNTGG 1 cut(s) 1214
VpaK11BI GGWCC 2 cut(s) 433, 988
VspI ATTAAT 1 cut(s) 1428
XapI RAATTY 3 cut(s) 510, 633, 1185
XceI RCATGY 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 2 cut(s) 329, 545
XmiI GTMKAC 2 cut(s) 408, 618
XmnI GAANNNNTTC 2 cut(s) 224, 1487
XspI CTAG 2 cut(s) 494, 929
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.