Rroxscaffold_1G00059470

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005954
Physical Location & Seq
Reverse (-)
81458475 .. 81460088
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059470.1

Sequence Viewer

Length: 1083 bp
ATGCTAGAAATGGCACCAAGGCTTTCACAGCTCTTACTCCTTCCTATTCTTCTAGTTCTCTCCATTTCTTGTACAGCCTCAGCTTCATCCCCAGCTCCTGAGAACTTTGTTTCATGTCTTTTAAGCCATTCGTTCCCTTCTCACCCAATCGGTCCAGCAATTTACACTCCCAACAATGCTTCTTACTCCTCCGTTTTGGAATCCTACATCCGAAACCTCCGTTTCAACGAATCATACACCCGAAAACCTTACCTTATTATCACCGCATTGCACAATGCAACTGACATTGTGTATCGTTGGCAATATGTCGCAAATAAGCTTGACAATGACTTGTTCATCAGGCTTACCATGGATGTTGTCAATGTAACTGGCTCTCAAACTGGAGAAAAGACTCTAAGAGCTACATTCAACGCCTTGTTTCTTGGAGACTCCGCAAGACTACTCACCGTGATGAACAAGAGTTTCCCTGAACTGGGTTTGGAGCAAGCCGATTGCCAAGAAATGAATTGGGTTGAATCGACGCTTTTCTGGACAAGCTTTGCAAACGGGACAGCTCCGGAGGCTTTGCTCTCTAGAGTTCCTCAAGTACTTACCCACTTGAAGAGGAAGTCGGACTACGTCAAGCAGCCAATTCCGAAAGCTGGTTTGAAGTGGATTATTCAGAAAATGATCGAGTTGCAGACACCCATGTTGACTTTCAATCCTTACGGCGGAAGAATGGCTGAGATTGCGGCATCTGCAAAACCTTTTCCACATAGAGCTGGCAATCTCTGGAAGGTTCAGTATGCAACAAACTGGGACGCTTCTGGGTCCGAGGCTGCGGAGAAATACATCGATTTGACGAGGAAGTTGTTCGAGTACATGACTCCTTTCGTTTCCAAGAACCCGAGGGAAGCCTTCTTCAACTATAAAGATCTCGACATTGGGATCAACCATAATGACAAGGGAAGCTATTTTGAGGGAAGAGTTTTTGGGGTCAAGTATTTCAAGGAAAATTTTGATAAATTGGTGCTTATTAAGACCAAGGTTGATCCTGGTAATTTCTTTAGGAACGAACAAAGTATCCCTACTCTTCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

360

Amino Acids

40.85

Weight (kDa)

8.88

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BBE PF08031 299 - 356 6.2e-18 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 13
AccIII TCCGGA 1 cut(s) 556
AciI CCGC 5 cut(s) 264, 432, 711, 731, 821
AclWI GGATC 2 cut(s) 935, 1025
AcsI RAATTY 1 cut(s) 994
AfaI GTAC 3 cut(s) 73, 588, 860
AfiI CCNNNNNNNGG 4 cut(s) 472, 473, 641, 710
AgsI TTSAA 8 cut(s) 226, 409, 515, 601, 649, 700, 904, 988
AjnI CCWGG 1 cut(s) 1033
AloI GAACNNNNNNTCC 2 cut(s) 1047, 1079
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 2 cut(s) 935, 1025
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 886
Aor13HI TCCGGA 1 cut(s) 556
ApeKI GCWGC 2 cut(s) 625, 818
ApoI RAATTY 1 cut(s) 994
Asp700I GAANNNNTTC 1 cut(s) 851
AspS9I GGNCC 2 cut(s) 152, 810
AsuHPI GGTGA 3 cut(s) 134, 253, 436
AvaI CYCGRG 1 cut(s) 886
AvaII GGWCC 2 cut(s) 152, 810
BanI GGYRCC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 599, 631
BbvCI CCTCAGC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 637, 805
BceAI ACGGC 1 cut(s) 724
BciT130I CCWGG 1 cut(s) 1035
BciVI GTATCC 1 cut(s) 1073
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 4 cut(s) 5, 53, 573, 1081
BfuI GTATCC 1 cut(s) 1073
BglII AGATCT 1 cut(s) 913
BisI GCNGC 3 cut(s) 626, 732, 819
BlsI GCNGC 3 cut(s) 627, 733, 820
BmcAI AGTACT 1 cut(s) 588
Bme1390I CCNGG 1 cut(s) 1035
Bme18I GGWCC 2 cut(s) 152, 810
BmeT110I CYCGRG 1 cut(s) 886
BmgT120I GGNCC 2 cut(s) 152, 810
BmiI GGNNCC 2 cut(s) 15, 811
BmrFI CCNGG 1 cut(s) 1035
BmrI ACTGGG 2 cut(s) 482, 805
BmsI GCATC 1 cut(s) 743
BmuI ACTGGG 2 cut(s) 482, 805
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 567
Bsa29I ATCGAT 1 cut(s) 834
BsaJI CCNNGG 5 cut(s) 17, 348, 813, 887, 1023
BsaWI WCCGGW 1 cut(s) 556
Bsc4I CCNNNNNNNGG 4 cut(s) 472, 473, 641, 710
Bse1I ACTGG 4 cut(s) 373, 385, 477, 800
Bse3DI GCAATG 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 556
BseBI CCWGG 1 cut(s) 1035
BseCI ATCGAT 1 cut(s) 834
BseDI CCNNGG 5 cut(s) 17, 348, 813, 887, 1023
BseGI GGATG 3 cut(s) 86, 207, 358
BseLI CCNNNNNNNGG 4 cut(s) 472, 473, 641, 710
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 3 cut(s) 90, 93, 714
BseNI ACTGG 4 cut(s) 373, 385, 477, 800
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 637, 805
BseYI CCCAGC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 13
BshVI ATCGAT 1 cut(s) 834
BsiHKCI CYCGRG 1 cut(s) 886
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 2 cut(s) 562, 812
BslI CCNNNNNNNGG 4 cut(s) 472, 473, 641, 710
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 2 cut(s) 562, 812
BsoBI CYCGRG 1 cut(s) 886
Bsp13I TCCGGA 1 cut(s) 556
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 4 cut(s) 669, 913, 927, 1030
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 5 cut(s) 264, 432, 711, 731, 821
BspCNI CTCAG 3 cut(s) 91, 92, 715
BspDI ATCGAT 1 cut(s) 834
BspEI TCCGGA 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 15, 811
BspPI GGATC 2 cut(s) 935, 1025
BspT107I GGYRCC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 71
BsrI ACTGG 4 cut(s) 373, 385, 477, 800
BssECI CCNNGG 5 cut(s) 17, 348, 813, 887, 1023
BssMI GATC 4 cut(s) 669, 913, 927, 1030
BssT1I CCWWGG 3 cut(s) 17, 348, 1023
Bst2UI CCWGG 1 cut(s) 1035
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 3 cut(s) 596, 958, 1077
BstAUI TGTACA 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 486, 763
BstDEI CTNAG 4 cut(s) 79, 99, 395, 723
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 3 cut(s) 86, 207, 358
BstKTI GATC 4 cut(s) 672, 916, 930, 1033
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 4 cut(s) 669, 913, 927, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 28, 560, 728, 737
BstNI CCWGG 1 cut(s) 1035
BstSCI CCNGG 1 cut(s) 1033
BstV1I GCAGC 2 cut(s) 637, 805
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
Bsu15I ATCGAT 1 cut(s) 834
BsuI GTATCC 1 cut(s) 1073
BsuTUI ATCGAT 1 cut(s) 834
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 3 cut(s) 86, 207, 358
Cac8I GCNNGC 2 cut(s) 486, 763
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 152, 810
ClaI ATCGAT 1 cut(s) 834
CseI GACGC 2 cut(s) 529, 809
Csp6I GTAC 3 cut(s) 72, 587, 859
CviAII CATG 4 cut(s) 114, 349, 688, 862
CviQI GTAC 3 cut(s) 72, 587, 859
DdeI CTNAG 4 cut(s) 79, 99, 395, 723
DpnI GATC 4 cut(s) 671, 915, 929, 1032
DpnII GATC 4 cut(s) 669, 913, 927, 1030
Eam1104I CTCTTC 3 cut(s) 596, 958, 1077
EarI CTCTTC 3 cut(s) 596, 958, 1077
EciI GGCGGA 1 cut(s) 726
Eco130I CCWWGG 3 cut(s) 17, 348, 1023
Eco47I GGWCC 2 cut(s) 152, 810
Eco88I CYCGRG 1 cut(s) 886
EcoRII CCWGG 1 cut(s) 1033
EcoT14I CCWWGG 3 cut(s) 17, 348, 1023
ErhI CCWWGG 3 cut(s) 17, 348, 1023
FaeI CATG 4 cut(s) 117, 352, 691, 865
FaqI GGGAC 2 cut(s) 562, 812
FatI CATG 4 cut(s) 113, 348, 687, 861
Fnu4HI GCNGC 3 cut(s) 626, 732, 819
FokI GGATG 3 cut(s) 73, 194, 365
Fsp4HI GCNGC 3 cut(s) 626, 732, 819
FspBI CTAG 4 cut(s) 5, 53, 573, 1081
GluI GCNGC 3 cut(s) 626, 732, 819
GsaI CCCAGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 402
HapII CCGG 1 cut(s) 557
HgaI GACGC 2 cut(s) 529, 809
Hin1II CATG 4 cut(s) 117, 352, 691, 865
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HindIII AAGCTT 2 cut(s) 317, 535
HinfI GANTC 6 cut(s) 200, 230, 391, 428, 515, 865
HpaII CCGG 1 cut(s) 557
HphI GGTGA 3 cut(s) 134, 253, 436
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 5 cut(s) 212, 613, 636, 663, 814
Hpy188III TCNNGA 6 cut(s) 98, 529, 557, 573, 772, 917
Hpy8I GTNNAC 1 cut(s) 693
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 4 cut(s) 50, 147, 769, 907
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 6 cut(s) 271, 278, 542, 679, 740, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 560, 728, 737
HpyF3I CTNAG 4 cut(s) 79, 99, 395, 723
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 4 cut(s) 117, 352, 691, 865
Kpn2I TCCGGA 1 cut(s) 556
Kzo9I GATC 4 cut(s) 669, 913, 927, 1030
LmnI GCTCC 3 cut(s) 100, 481, 559
Lsp1109I GCAGC 2 cut(s) 637, 805
LweI GCATC 1 cut(s) 743
MaeI CTAG 4 cut(s) 5, 53, 573, 1081
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 364
MalI GATC 4 cut(s) 671, 915, 929, 1032
MboI GATC 4 cut(s) 669, 913, 927, 1030
MboII GAAGA 6 cut(s) 41, 613, 726, 892, 975, 1064
MflI RGATCY 1 cut(s) 913
MluCI AATT 6 cut(s) 159, 505, 630, 994, 1004, 1039
MlyI GAGTC 3 cut(s) 385, 422, 859
MmeI TCCRAC 1 cut(s) 591
MroI TCCGGA 1 cut(s) 556
MroXI GAANNNNTTC 1 cut(s) 851
MseI TTAA 2 cut(s) 122, 1017
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 1035
MvaI CCWGG 1 cut(s) 1035
MwoI GCNNNNNNNGC 4 cut(s) 28, 560, 728, 737
NcoI CCATGG 1 cut(s) 348
NdeII GATC 4 cut(s) 669, 913, 927, 1030
NlaIII CATG 4 cut(s) 117, 352, 691, 865
NlaIV GGNNCC 2 cut(s) 15, 811
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 3 cut(s) 200, 230, 515
PflFI GACNNNGTC 1 cut(s) 617
PkrI GCNGC 3 cut(s) 627, 733, 820
PleI GAGTC 3 cut(s) 385, 422, 859
PpsI GAGTC 3 cut(s) 385, 422, 859
Psp6I CCWGG 1 cut(s) 1033
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 1 cut(s) 1033
PspN4I GGNNCC 2 cut(s) 15, 811
PspPI GGNCC 2 cut(s) 152, 810
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 913
PsyI GACNNNGTC 1 cut(s) 617
RsaI GTAC 3 cut(s) 73, 588, 860
RsaNI GTAC 3 cut(s) 72, 587, 859
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 122, 1017
SatI GCNGC 3 cut(s) 626, 732, 819
Sau3AI GATC 4 cut(s) 669, 913, 927, 1030
Sau96I GGNCC 2 cut(s) 152, 810
ScaI AGTACT 1 cut(s) 588
SchI GAGTC 3 cut(s) 385, 422, 859
ScrFI CCNGG 1 cut(s) 1035
SfaNI GCATC 1 cut(s) 743
SinI GGWCC 2 cut(s) 152, 810
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 6 cut(s) 159, 505, 630, 994, 1004, 1039
SsiI CCGC 5 cut(s) 264, 432, 711, 731, 821
SspMI CTAG 4 cut(s) 5, 53, 573, 1081
StyD4I CCNGG 1 cut(s) 1033
StyI CCWWGG 3 cut(s) 17, 348, 1023
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 621
TaqI TCGA 5 cut(s) 518, 672, 834, 855, 918
TaqII GACCGA 1 cut(s) 140
TasI AATT 6 cut(s) 159, 505, 630, 994, 1004, 1039
TatI WGTACW 3 cut(s) 71, 586, 858
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 3 cut(s) 200, 230, 515
Tru1I TTAA 2 cut(s) 122, 1017
Tru9I TTAA 2 cut(s) 122, 1017
TseI GCWGC 2 cut(s) 625, 818
TspDTI ATGAA 5 cut(s) 75, 102, 325, 467, 518
TspGWI ACGGA 2 cut(s) 181, 209
Tth111I GACNNNGTC 1 cut(s) 617
VpaK11BI GGWCC 2 cut(s) 152, 810
XapI RAATTY 1 cut(s) 994
XbaI TCTAGA 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 4 cut(s) 5, 53, 573, 1081
ZrmI AGTACT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.