Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005954

Physical Location & Seq

Genomic Coordinates Forward (+)

40199260 .. 40200639

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1266900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAAGATTAGAAGTGGAGGCCATGATTACGAGGGTGTATCGTACGTGGCTGAAGTTCCATTCTTCATCCTCGACATGTTTAATCTTCGATCCATCCACGTAGACATCAAATCCGAGACCGCATGGGTCCAGACGGGGGCTACTCTTGGTGAAGTTTACTATAGAATTGCCGAGAAAAGCAAAACCCATGGCTTTCCCGCTGGTGTTTGCCCTACAGTTGGTGTTGGAGGCCACTTCAGTGGCGGTGGATATGGTAATATGATGAGAAAGTACGGCTTGTCAGTTGACAACATAGTTGATGCACAACTTGTGAATGTGCATGGTGAACTTCTCGACCGAAAAACAATGGGTGAAGACCTTTTCTGGGCCATTACAGGAGGCGGAGGAGCCAGCTTTGGAGTTGTAATCGCGTACAAAATTAATCTTGTACACGTTCCAGAAACAGTTACTGTTTTCAGAGTTCCAAGAACACTAGAAGAAAATGCGACGGACATCGTCTACCGTTGGCAATATATCGCGGATAAGCTTGACGATGACTTGTTCATCAGGCTTACCATGGATATTGTAAATGGTACTACAAATTGTAGTGGAGAAAACAATAAGACTCTTAGGGCTTCATTTATTGCCATGTTTCTCGGAGACTCTGAGAGGCTCCTCTCAATCTTGGACAAGAGCTTCCCTGAATTGGGTGTGAAGCAATCTGATTGCAATGAAATGAGCTGGGCTCAATCTGTGCTTTTCTGGACGAGCTTCCCAACTGGGACAGCTACTGAAGCTTTGCTTTCTAGAACACCTCAAGTGCTTACACACTTGACGAGAAAATCAGACTATGTCAAAAAACCAATTCCAAAAACTGGTTTGATGTGGATTTTTCAGAAAATGATTGAGCTTGAGGCACCAACGATGACCTTTAACCCCTACGGCGGAAAAATGAGTGAGATATCAGCGTTGGCAACTCCATTTCCTCATAGAGCTGGGAATCTTTGGAAGATTCAGTATGCAACAAACTGGAACATAGAGGGGACTGAGGCATCAGATCATTATATTGATTTGACAAGAAAGCTCCACATGTACATGACTCCTTTTGTTTCCAAGAATCCAAGGGAAGCCTTTTACAACTACAAGGATCTTGACATTGGGATCAACCATAATGCTAATGGCATGGCAAGCTATTTGGAGGGGAGAGGTTTTGGCATTATGTACTTCATGCATAACTTTGACAGGTTGGTGAATGTGAAGACCAAGGTCGACCCTGGTAATTTCTTTAGGAATGAACAAAGTATCCCAACTCTTCCATACTATGAGGCCCCATTTGGTGGCCAAGATGGGATGGATTATCTTCAATTAAATTTGACTTGTAGTGCAACCAATGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

460

Amino Acids

51.59

Weight (kDa)

5.97

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	3 - 111	1.5e-16	FAD binding domain
BBE	PF08031	370 - 429	6.3e-17	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30700
fragaria_vesca	FvH4_3g11300 FvH4_3g11330
malus_domestica	MD05G1266000.v1.1 MD05G1266200.v1.1 MD05G1266400.v1.1 MD05G1266900.v1.1
prunus_persica	Prupe.1G171200_v2.0.a1 Prupe.4G099500_v2.0.a1 Prupe.7G051400_v2.0.a1
pyrus_communis	pycom05g25010 pycom05g25020
rosa_chinensis	RchiOBHm_Chr5g0018191 RchiOBHm_Chr5g0018231 RchiOBHm_Chr5g0018281
rosa_laevigata	RLG00000012618 RLG00000032345 RLG00000032346 RLG00000032347
rosa_multiflora	Rmu_sc0008158.1_g000003 Rmu_sc0012569.1_g000002 Rmu_sc0013020.1_g000006 Rmu_sc0018521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059470
rosa_rugosa	Rorug05G0041100
rosa_wichuraiana	Rw5G011710 Rw5G011720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	895
AccB7I	CCANNNNNTGG	3 cut(s)	854, 1316, 1374
AccI	GTMKAC	3 cut(s)	102, 498, 1248
AccII	CGCG	2 cut(s)	410, 518
AciI	CCGC	6 cut(s)	120, 198, 243, 381, 518, 924
AclWI	GGATC	3 cut(s)	84, 1134, 1148
AcoI	YGGCCR	1 cut(s)	1318
AcsI	RAATTY	1 cut(s)	1348
AcuI	CTGAAG	3 cut(s)	72, 220, 792
AfaI	GTAC	7 cut(s)	44, 272, 413, 429, 574, 1073, 1202
AfiI	CCNNNNNNNGG	9 cut(s)	136, 218, 364, 685, 686, 854, 923, 1316, 1374
AflIII	ACRYGT	3 cut(s)	75, 430, 1068
AgsI	TTSAA	1 cut(s)	1343
AjnI	CCWGG	1 cut(s)	1252
AleI	CACNNNNGTG	1 cut(s)	237
AloI	GAACNNNNNNTCC	2 cut(s)	1266, 1298
Alw26I	GTCTC	2 cut(s)	110, 633
AlwI	GGATC	3 cut(s)	84, 1134, 1148
AlwNI	CAGNNNCTG	2 cut(s)	449, 770
AoxI	GGCC	5 cut(s)	19, 229, 366, 1305, 1318
ApoI	RAATTY	1 cut(s)	1348
AseI	ATTAAT	1 cut(s)	420
AspS9I	GGNCC	3 cut(s)	127, 366, 1306
AsuHPI	GGTGA	4 cut(s)	161, 335, 362, 1240
AvaII	GGWCC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	1320
BanI	GGYRCC	1 cut(s)	895
BanII	GRGCYC	1 cut(s)	727
BbsI	GAAGAC	2 cut(s)	360, 1244
BccI	CCATC	3 cut(s)	101, 1319, 1324
BceAI	ACGGC	2 cut(s)	289, 937
BciT130I	CCWGG	1 cut(s)	1254
BciVI	GTATCC	1 cut(s)	1292
BcoDI	GTCTC	2 cut(s)	110, 633
BfaI	CTAG	2 cut(s)	473, 786
BfmI	CTRYAG	2 cut(s)	160, 213
BfuI	GTATCC	1 cut(s)	1292
Bme1390I	CCNGG	1 cut(s)	1254
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	127, 366, 1306
BmiI	GGNNCC	5 cut(s)	128, 388, 653, 897, 1308
BmrFI	CCNGG	1 cut(s)	1254
BmrI	ACTGGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	289, 1040
BmuI	ACTGGG	1 cut(s)	768
BoxI	GACNNNNGTC	1 cut(s)	1244
BpiI	GAAGAC	2 cut(s)	360, 1244
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpuEI	CTTGAG	2 cut(s)	780, 911
BsaAI	YACGTR	2 cut(s)	46, 100
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	5 cut(s)	187, 555, 1100, 1242, 1252
Bsc4I	CCNNNNNNNGG	9 cut(s)	136, 218, 364, 685, 686, 854, 923, 1316, 1374
Bse1I	ACTGG	3 cut(s)	763, 859, 1013
Bse3DI	GCAATG	1 cut(s)	715
BseBI	CCWGG	1 cut(s)	1254
BseDI	CCNNGG	5 cut(s)	187, 555, 1100, 1242, 1252
BseGI	GGATG	3 cut(s)	66, 93, 1335
BseLI	CCNNNNNNNGG	9 cut(s)	136, 218, 364, 685, 686, 854, 923, 1316, 1374
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	2 cut(s)	636, 1017
BseNI	ACTGG	3 cut(s)	763, 859, 1013
BseRI	GAGGAG	2 cut(s)	399, 644
BseYI	CCCAGC	2 cut(s)	720, 974
Bsh1236I	CGCG	2 cut(s)	410, 518
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	5 cut(s)	21, 231, 368, 1307, 1320
BshNI	GGYRCC	1 cut(s)	895
BsiEI	CGRYCG	1 cut(s)	337
BsiWI	CGTACG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	775, 1036
BslI	CCNNNNNNNGG	9 cut(s)	136, 218, 364, 685, 686, 854, 923, 1316, 1374
BsmAI	GTCTC	2 cut(s)	110, 633
BsmFI	GGGAC	2 cut(s)	775, 1036
BsnI	GGCC	5 cut(s)	21, 231, 368, 1307, 1320
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp1407I	TGTACA	2 cut(s)	427, 1071
Bsp143I	GATC	4 cut(s)	89, 1036, 1126, 1140
Bsp19I	CCATGG	2 cut(s)	187, 555
BspACI	CCGC	6 cut(s)	120, 198, 243, 381, 518, 924
BspANI	GGCC	5 cut(s)	21, 231, 368, 1307, 1320
BspCNI	CTCAG	2 cut(s)	637, 1018
BspFNI	CGCG	2 cut(s)	410, 518
BspLI	GGNNCC	5 cut(s)	128, 388, 653, 897, 1308
BspPI	GGATC	3 cut(s)	84, 1134, 1148
BspT107I	GGYRCC	1 cut(s)	895
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	715
BsrGI	TGTACA	2 cut(s)	427, 1071
BsrI	ACTGG	3 cut(s)	763, 859, 1013
BssECI	CCNNGG	5 cut(s)	187, 555, 1100, 1242, 1252
BssMI	GATC	4 cut(s)	89, 1036, 1126, 1140
BssT1I	CCWWGG	4 cut(s)	187, 555, 1100, 1242
Bst2UI	CCWGG	1 cut(s)	1254
Bst4CI	ACNGT	4 cut(s)	217, 445, 451, 503
Bst6I	CTCTTC	1 cut(s)	1296
BstAUI	TGTACA	2 cut(s)	427, 1071
BstBAI	YACGTR	2 cut(s)	46, 100
BstC8I	GCNNGC	2 cut(s)	391, 1168
BstDEI	CTNAG	3 cut(s)	608, 645, 1026
BstDSI	CCRYGG	2 cut(s)	187, 555
BstF5I	GGATG	3 cut(s)	66, 93, 1335
BstFNI	CGCG	2 cut(s)	410, 518
BstKTI	GATC	4 cut(s)	92, 1039, 1129, 1143
BstMAI	GTCTC	2 cut(s)	110, 633
BstMBI	GATC	4 cut(s)	89, 1036, 1126, 1140
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	773, 1167
BstNI	CCWGG	1 cut(s)	1254
BstNSI	RCATGY	2 cut(s)	79, 1072
BstPAI	GACNNNNGTC	1 cut(s)	1244
BstSCI	CCNGG	1 cut(s)	1252
BstSFI	CTRYAG	2 cut(s)	160, 213
BstUI	CGCG	2 cut(s)	410, 518
BstV2I	GAAGAC	2 cut(s)	360, 1244
BstX2I	RGATCY	1 cut(s)	1126
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	1126
BsuI	GTATCC	1 cut(s)	1292
BsuRI	GGCC	5 cut(s)	21, 231, 368, 1307, 1320
BtgI	CCRYGG	2 cut(s)	187, 555
BtsCI	GGATG	3 cut(s)	66, 93, 1335
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	391, 1168
CaiI	CAGNNNCTG	2 cut(s)	449, 770
Cfr13I	GGNCC	3 cut(s)	127, 366, 1306
Csp6I	GTAC	7 cut(s)	43, 271, 412, 428, 573, 1072, 1201
CviQI	GTAC	7 cut(s)	43, 271, 412, 428, 573, 1072, 1201
DdeI	CTNAG	3 cut(s)	608, 645, 1026
DpnI	GATC	4 cut(s)	91, 1038, 1128, 1142
DpnII	GATC	4 cut(s)	89, 1036, 1126, 1140
EaeI	YGGCCR	1 cut(s)	1318
Eam1104I	CTCTTC	1 cut(s)	1296
EarI	CTCTTC	1 cut(s)	1296
EciI	GGCGGA	2 cut(s)	396, 939
Eco130I	CCWWGG	4 cut(s)	187, 555, 1100, 1242
Eco24I	GRGCYC	1 cut(s)	727
Eco31I	GGTCTC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	942
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	3 cut(s)	72, 220, 792
EcoO109I	RGGNCCY	1 cut(s)	1306
EcoRII	CCWGG	1 cut(s)	1252
EcoRV	GATATC	1 cut(s)	942
EcoT14I	CCWWGG	4 cut(s)	187, 555, 1100, 1242
EcoT22I	ATGCAT	1 cut(s)	1212
EcoT38I	GRGCYC	1 cut(s)	727
ErhI	CCWWGG	4 cut(s)	187, 555, 1100, 1242
FalI	AAGNNNNNCTT	4 cut(s)	260, 292, 765, 797
FaqI	GGGAC	2 cut(s)	775, 1036
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	3 cut(s)	102, 498, 1248
FokI	GGATG	3 cut(s)	53, 80, 1342
FriOI	GRGCYC	1 cut(s)	727
FspBI	CTAG	2 cut(s)	473, 786
GsaI	CCCAGC	2 cut(s)	724, 978
HaeIII	GGCC	5 cut(s)	21, 231, 368, 1307, 1320
HincII	GTYRAC	2 cut(s)	286, 1249
HindII	GTYRAC	2 cut(s)	286, 1249
HindIII	AAGCTT	2 cut(s)	524, 774
HinfI	GANTC	6 cut(s)	604, 641, 979, 991, 1078, 1096
HphI	GGTGA	4 cut(s)	161, 335, 362, 1240
Hpy166II	GTNNAC	7 cut(s)	103, 157, 286, 326, 430, 499, 1249
Hpy188I	TCNGA	8 cut(s)	115, 458, 638, 646, 703, 826, 876, 1036
Hpy188III	TCNNGA	6 cut(s)	130, 332, 437, 742, 786, 1130
Hpy8I	GTNNAC	7 cut(s)	103, 157, 286, 326, 430, 499, 1249
Hpy99I	CGWCG	1 cut(s)	490
HpyCH4III	ACNGT	4 cut(s)	217, 445, 451, 503
HpyCH4IV	ACGT	3 cut(s)	45, 99, 432
HpyCH4V	TGCA	6 cut(s)	302, 319, 708, 1001, 1210, 1364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	773, 1167
HpyF3I	CTNAG	3 cut(s)	608, 645, 1026
HpySE526I	ACGT	3 cut(s)	45, 99, 432
Kzo9I	GATC	4 cut(s)	89, 1036, 1126, 1140
LmnI	GCTCC	3 cut(s)	386, 657, 1068
LweI	GCATC	2 cut(s)	289, 1040
MaeI	CTAG	2 cut(s)	473, 786
MaeII	ACGT	3 cut(s)	45, 99, 432
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	4 cut(s)	91, 1038, 1128, 1142
MboI	GATC	4 cut(s)	89, 1036, 1126, 1140
MboII	GAAGA	9 cut(s)	16, 55, 77, 365, 488, 1000, 1249, 1283, 1331
MflI	RGATCY	1 cut(s)	1126
MhlI	GDGCHC	1 cut(s)	727
MlsI	TGGCCA	1 cut(s)	1320
MluCI	AATT	8 cut(s)	165, 417, 580, 683, 843, 1258, 1343, 1348
MluNI	TGGCCA	1 cut(s)	1320
MlyI	GAGTC	3 cut(s)	598, 635, 1072
MmeI	TCCRAC	1 cut(s)	205
Mox20I	TGGCCA	1 cut(s)	1320
Mph1103I	ATGCAT	1 cut(s)	1212
MscI	TGGCCA	1 cut(s)	1320
MseI	TTAA	4 cut(s)	81, 420, 912, 1346
MslI	CAYNNNNRTG	2 cut(s)	237, 1073
Msp20I	TGGCCA	1 cut(s)	1320
MspA1I	CMGCKG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	1254
MvaI	CCWGG	1 cut(s)	1254
MvnI	CGCG	2 cut(s)	410, 518
MwoI	GCNNNNNNNGC	2 cut(s)	773, 1167
NcoI	CCATGG	2 cut(s)	187, 555
NdeII	GATC	4 cut(s)	89, 1036, 1126, 1140
NlaIV	GGNNCC	5 cut(s)	128, 388, 653, 897, 1308
NmeAIII	GCCGAG	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	1212
NspI	RCATGY	2 cut(s)	79, 1072
OliI	CACNNNNGTG	1 cut(s)	237
PciI	ACATGT	2 cut(s)	75, 1068
PfeI	GAWTC	3 cut(s)	979, 991, 1096
Pfl23II	CGTACG	1 cut(s)	42
PflFI	GACNNNGTC	2 cut(s)	494, 830
PflMI	CCANNNNNTGG	3 cut(s)	854, 1316, 1374
PleI	GAGTC	3 cut(s)	598, 635, 1072
PpsI	GAGTC	3 cut(s)	598, 635, 1072
Ppu21I	YACGTR	2 cut(s)	46, 100
PscI	ACATGT	2 cut(s)	75, 1068
PshAI	GACNNNNGTC	1 cut(s)	1244
PshBI	ATTAAT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	1252
PspFI	CCCAGC	2 cut(s)	720, 974
PspGI	CCWGG	1 cut(s)	1252
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	5 cut(s)	128, 388, 653, 897, 1308
PspPI	GGNCC	3 cut(s)	127, 366, 1306
PstNI	CAGNNNCTG	2 cut(s)	449, 770
PsuI	RGATCY	1 cut(s)	1126
PsyI	GACNNNGTC	2 cut(s)	494, 830
RsaI	GTAC	7 cut(s)	44, 272, 413, 429, 574, 1073, 1202
RsaNI	GTAC	7 cut(s)	43, 271, 412, 428, 573, 1072, 1201
RseI	CAYNNNNRTG	2 cut(s)	237, 1073
SalI	GTCGAC	1 cut(s)	1247
SaqAI	TTAA	4 cut(s)	81, 420, 912, 1346
Sau3AI	GATC	4 cut(s)	89, 1036, 1126, 1140
Sau96I	GGNCC	3 cut(s)	127, 366, 1306
SchI	GAGTC	3 cut(s)	598, 635, 1072
ScrFI	CCNGG	1 cut(s)	1254
SduI	GDGCHC	1 cut(s)	727
SfaNI	GCATC	2 cut(s)	289, 1040
SfcI	CTRYAG	2 cut(s)	160, 213
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	237, 1073
SmlI	CTYRAG	2 cut(s)	795, 890
SmoI	CTYRAG	2 cut(s)	795, 890
Sse9I	AATT	8 cut(s)	165, 417, 580, 683, 843, 1258, 1343, 1348
SsiI	CCGC	6 cut(s)	120, 198, 243, 381, 518, 924
SspMI	CTAG	2 cut(s)	473, 786
StyD4I	CCNGG	1 cut(s)	1252
StyI	CCWWGG	4 cut(s)	187, 555, 1100, 1242
TaaI	ACNGT	4 cut(s)	217, 445, 451, 503
TaiI	ACGT	3 cut(s)	48, 102, 435
TaqI	TCGA	4 cut(s)	72, 88, 333, 1248
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	8 cut(s)	165, 417, 580, 683, 843, 1258, 1343, 1348
TatI	WGTACW	3 cut(s)	427, 1071, 1200
TfiI	GAWTC	3 cut(s)	979, 991, 1096
Tru1I	TTAA	4 cut(s)	81, 420, 912, 1346
Tru9I	TTAA	4 cut(s)	81, 420, 912, 1346
TscAI	CASTG	1 cut(s)	244
TspDTI	ATGAA	7 cut(s)	17, 55, 532, 606, 726, 1195, 1287
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	244
Tth111I	GACNNNGTC	2 cut(s)	494, 830
Van91I	CCANNNNNTGG	3 cut(s)	854, 1316, 1374
VpaK11BI	GGWCC	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	1 cut(s)	1348
XbaI	TCTAGA	1 cut(s)	785
XceI	RCATGY	2 cut(s)	79, 1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1154
XmiI	GTMKAC	3 cut(s)	102, 498, 1248
XspI	CTAG	2 cut(s)	473, 786
Zsp2I	ATGCAT	1 cut(s)	1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.