Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3542755 .. 3544864

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0041100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCGAAGCTTCTCTTTCCCATCATTATTACTCTCTTCCTCCAATAACTTTTGCTCCCATGTCCTTAACTCCTTGAGCTCCTCATCAATCACTCAAAACAAGTCGAACATGGAGCTCTTTGATCTTGAAGAACACAACCCAGATTCTATCCCAGATCTATTTGCCTCAGAAACCGATCACATGCCCTCACAGAACTTCTTAACCAGCTCCATACACTCGGATTTCTACTGCTCATTTCGACTCGAGGCCATTTCTCTGTTTTTACAGGCACAGTATTCCTGCGACCTTGACCCTTTCATTCCTTACCTAGCCATTAACTACCTGGATCAGTTCATTTCCAAGCAAAACATTCCGCAAGGAAAGCCTTGGGTTTCAAGACTTGTTGAAGTCGCCTGCCTGTCTCTAGCTGCAAAAATGAAGAACACTTCATTCTCATTCTCTGATTTTCAGCCATATATGAAACAGAGAAGAGAAGAAGGTTTCATGTTTGAGGCGCAAACGATTAACAAAATGGAGCTTGTGATTCTCGACACATTAAATTGGAGGATGAAATCAATAACTCCTTTCTCCTTTCTACATTTCTTTGTCTCTTTGGTGGACATAAATGAACGACCACTCACTCAAGCCCTCAAAAGTCGAGCTTCAGATGTCATCTTCAATGCCCATAATGAAATCAAATTCGTTGAGTTTAAGCCATCGATAATTGCGGCATCGGCGGTTTTGTTTGCGAGTCATGAGCTACTTCCATTGCAGTTTCCTAGTTTAAAAGTTTCAATATCATCTTGCCAATATGTAAATGAAGAGAGTTTGTTGAAATGCTTGAACCTAATGCAAGAAATGATAGTGAATGAAGGGTACGACTCAGTTTTAGATACTCTGTCATGCACAACTAGAACTCCAATGAGCGTGCTGGACCATCGTCACTTCTCTAGCTCCGAAAGCGAGGTTAATAGCACCGCTGCCACGACCAACACCACCACAGCTGCGGCTGCAGCATATGCTGATTCTAGTACTAGTAGTGTAATGGTGGCAGAGAAGAGAAACAGCAAGCGGCGTAGATTGAATGGTTTTTGTACAAGTGAAAATAGGTTTCAGGTTTCTTCTCGTCATTTTCAACATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

374

Amino Acids

42.35

Weight (kDa)

5.89

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	54 - 183	3.6e-19	Cyclin, N-terminal domain
Cyclin_C	PF02984	186 - 284	1.7e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	353, 707, 716, 957, 986, 1051
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	3 cut(s)	857, 1012, 1075
AgsI	TTSAA	9 cut(s)	128, 375, 386, 658, 774, 814, 823, 1063, 1115
AhlI	ACTAGT	1 cut(s)	1013
AjnI	CCWGG	1 cut(s)	321
Alw21I	GWGCWC	2 cut(s)	80, 117
Alw26I	GTCTC	2 cut(s)	405, 592
AlwI	GGATC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	5 cut(s)	407, 959, 983, 989, 992
ApoI	RAATTY	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	913
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	913
BanII	GRGCYC	2 cut(s)	80, 117
Bbv12I	GWGCWC	2 cut(s)	80, 117
BbvI	GCAGC	5 cut(s)	394, 946, 970, 976, 1004
BccI	CCATC	3 cut(s)	28, 703, 924
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	405, 592
BcuI	ACTAGT	1 cut(s)	1013
BfaI	CTAG	7 cut(s)	308, 404, 759, 891, 930, 1008, 1014
BfmI	CTRYAG	1 cut(s)	990
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	8 cut(s)	408, 708, 960, 984, 987, 990, 993, 1052
BlsI	GCNGC	8 cut(s)	409, 709, 961, 985, 988, 991, 994, 1053
BmcAI	AGTACT	1 cut(s)	1012
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	913
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	913
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	719
BoxI	GACNNNNGTC	1 cut(s)	918
BpuEI	CTTGAG	2 cut(s)	94, 606
Bsa29I	ATCGAT	1 cut(s)	698
BsaJI	CCNNGG	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 880, 910
Bse3DI	GCAATG	1 cut(s)	746
BseBI	CCWGG	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	698
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	552
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	2 cut(s)	180, 876
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	5 cut(s)	394, 946, 970, 976, 1004
BshFI	GGCC	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	698
BsiHKAI	GWGCWC	2 cut(s)	80, 117
BsiHKCI	CYCGRG	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	405, 592
BsnI	GGCC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	80, 117
Bsp1407I	TGTACA	1 cut(s)	1073
Bsp143I	GATC	4 cut(s)	121, 154, 175, 325
BspACI	CCGC	6 cut(s)	353, 707, 716, 957, 986, 1051
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	179, 875
BspDI	ATCGAT	1 cut(s)	698
BspHI	TCATGA	1 cut(s)	733
BspMAI	CTGCAG	1 cut(s)	994
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	746
BsrGI	TGTACA	1 cut(s)	1073
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	4 cut(s)	121, 154, 175, 325
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	4 cut(s)	40, 463, 795, 1031
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstAUI	TGTACA	1 cut(s)	1073
BstC8I	GCNNGC	3 cut(s)	394, 908, 1049
BstDEI	CTNAG	2 cut(s)	166, 862
BstF5I	GGATG	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	4 cut(s)	124, 157, 178, 328
BstMAI	GTCTC	2 cut(s)	405, 592
BstMBI	GATC	4 cut(s)	121, 154, 175, 325
BstMWI	GCNNNNNNNGC	6 cut(s)	361, 713, 939, 989, 992, 998
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	918
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	5 cut(s)	394, 946, 970, 976, 1004
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	698
BsuRI	GGCC	1 cut(s)	248
BsuTUI	ATCGAT	1 cut(s)	698
BtsCI	GGATG	1 cut(s)	552
Cac8I	GCNNGC	3 cut(s)	394, 908, 1049
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	913
ClaI	ATCGAT	1 cut(s)	698
Csp6I	GTAC	3 cut(s)	856, 1011, 1074
CviAII	CATG	6 cut(s)	59, 109, 181, 484, 734, 882
CviQI	GTAC	3 cut(s)	856, 1011, 1074
DdeI	CTNAG	2 cut(s)	166, 862
DpnI	GATC	4 cut(s)	123, 156, 177, 327
DpnII	GATC	4 cut(s)	121, 154, 175, 325
DraI	TTTAAA	1 cut(s)	765
Eam1104I	CTCTTC	4 cut(s)	40, 463, 795, 1031
EarI	CTCTTC	4 cut(s)	40, 463, 795, 1031
Ecl136II	GAGCTC	2 cut(s)	78, 115
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	2 cut(s)	80, 117
Eco47I	GGWCC	1 cut(s)	913
Eco53kI	GAGCTC	2 cut(s)	78, 115
Eco57I	CTGAAG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	2 cut(s)	78, 115
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	2 cut(s)	80, 117
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	6 cut(s)	62, 112, 184, 487, 737, 885
FalI	AAGNNNNNCTT	3 cut(s)	30, 625, 657
FatI	CATG	6 cut(s)	58, 108, 180, 483, 733, 881
FauNDI	CATATG	1 cut(s)	997
Fnu4HI	GCNGC	8 cut(s)	408, 708, 960, 984, 987, 990, 993, 1052
FokI	GGATG	1 cut(s)	559
FriOI	GRGCYC	2 cut(s)	80, 117
Fsp4HI	GCNGC	8 cut(s)	408, 708, 960, 984, 987, 990, 993, 1052
FspBI	CTAG	7 cut(s)	308, 404, 759, 891, 930, 1008, 1014
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	8 cut(s)	408, 708, 960, 984, 987, 990, 993, 1052
HaeIII	GGCC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	6 cut(s)	62, 112, 184, 487, 737, 885
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	6 cut(s)	143, 240, 523, 730, 860, 1004
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	5 cut(s)	169, 220, 442, 646, 937
Hpy188III	TCNNGA	4 cut(s)	125, 375, 527, 734
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	2 cut(s)	470, 845
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	410, 751, 832, 885, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	361, 713, 939, 989, 992, 998
HpyF3I	CTNAG	2 cut(s)	166, 862
Hsp92II	CATG	6 cut(s)	62, 112, 184, 487, 737, 885
HspAI	GCGC	1 cut(s)	494
Kzo9I	GATC	4 cut(s)	121, 154, 175, 325
LmnI	GCTCC	6 cut(s)	59, 83, 112, 212, 514, 938
Lsp1109I	GCAGC	5 cut(s)	394, 946, 970, 976, 1004
LweI	GCATC	1 cut(s)	719
MaeI	CTAG	7 cut(s)	308, 404, 759, 891, 930, 1008, 1014
MaeIII	GTNAC	1 cut(s)	920
MalI	GATC	4 cut(s)	123, 156, 177, 327
MboI	GATC	4 cut(s)	121, 154, 175, 325
MboII	GAAGA	9 cut(s)	27, 140, 430, 480, 485, 646, 812, 1048, 1092
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	80, 117
MluCI	AATT	3 cut(s)	538, 677, 702
MlyI	GAGTC	3 cut(s)	234, 739, 854
MnlI	CCTC	9 cut(s)	49, 91, 175, 196, 238, 484, 537, 638, 937
MseI	TTAA	8 cut(s)	66, 200, 315, 504, 536, 690, 764, 948
MspA1I	CMGCKG	2 cut(s)	959, 983
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	6 cut(s)	361, 713, 939, 989, 992, 998
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	4 cut(s)	121, 154, 175, 325
NlaIII	CATG	6 cut(s)	62, 112, 184, 487, 737, 885
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	733
PfeI	GAWTC	3 cut(s)	143, 523, 1004
PkrI	GCNGC	8 cut(s)	409, 709, 961, 985, 988, 991, 994, 1053
PleI	GAGTC	3 cut(s)	234, 738, 854
PpsI	GAGTC	3 cut(s)	234, 738, 854
PshAI	GACNNNNGTC	1 cut(s)	918
Psp124BI	GAGCTC	2 cut(s)	80, 117
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	913
PspXI	VCTCGAGB	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	994
PsuI	RGATCY	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	3 cut(s)	857, 1012, 1075
RsaNI	GTAC	3 cut(s)	856, 1011, 1074
SacI	GAGCTC	2 cut(s)	80, 117
SaqAI	TTAA	8 cut(s)	66, 200, 315, 504, 536, 690, 764, 948
SatI	GCNGC	8 cut(s)	408, 708, 960, 984, 987, 990, 993, 1052
Sau3AI	GATC	4 cut(s)	121, 154, 175, 325
Sau96I	GGNCC	1 cut(s)	913
ScaI	AGTACT	1 cut(s)	1012
SchI	GAGTC	3 cut(s)	234, 739, 854
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	80, 117
SfaNI	GCATC	1 cut(s)	719
SfcI	CTRYAG	1 cut(s)	990
Sfr274I	CTCGAG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	913
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	3 cut(s)	73, 242, 621
SmoI	CTYRAG	3 cut(s)	73, 242, 621
SpeI	ACTAGT	1 cut(s)	1013
Sse9I	AATT	3 cut(s)	538, 677, 702
SsiI	CCGC	6 cut(s)	353, 707, 716, 957, 986, 1051
SspMI	CTAG	7 cut(s)	308, 404, 759, 891, 930, 1008, 1014
SstI	GAGCTC	2 cut(s)	80, 117
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	6 cut(s)	104, 238, 243, 528, 637, 698
TasI	AATT	3 cut(s)	538, 677, 702
TatI	WGTACW	2 cut(s)	1010, 1073
TauI	GCSGC	3 cut(s)	710, 989, 1054
TfiI	GAWTC	3 cut(s)	143, 523, 1004
Tru1I	TTAA	8 cut(s)	66, 200, 315, 504, 536, 690, 764, 948
Tru9I	TTAA	8 cut(s)	66, 200, 315, 504, 536, 690, 764, 948
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	5 cut(s)	407, 959, 983, 989, 992
Tsp45I	GTSAC	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	913
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	242
XspI	CTAG	7 cut(s)	308, 404, 759, 891, 930, 1008, 1014
ZrmI	AGTACT	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.