Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Reverse (-)

11509287 .. 11510510

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG122000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGATGACTCTCCAACTGCAGAGAGTACTCTACAATTTTGAACTTCAAGGCAATAATCTTGAGAGTTCGTCGACCATGGTCATGAACTATAATGGATCAATCAAACGCACACGAGCCGAACCTGATCAAGAACAAGAGGCCGTGATCTTCAAGAAACCTAGGGTTGAAGGCAGCAAACCAGAGAGGTCCGTGATGCCGTACCAAGAACTGAGTCCAAACTATGAATCTGAAACAAGGCTGAAGATGGTATCTGGATCTTTCTATTTGCCCAAGGAAAACGAACTCCGACCCCAAGGTGAAGACGCTCACTTCATATGTGCTCAAGAAAACACTATTGGAGTGGCGGACGGTGTTGGTGGATGGGCTAACAAGGGCATCGACTCGGGTCTCTACGCTCGAGAACTCATGATGAACTCGGTCATGGCAGTTCACAATCAACACAAGACCTCATCTGGAGTCATTAATCCAAGAAAAGTGTTGGAGGAGGCTTTCTCAAACACCAAGAACATCCAAGGCTCGTCAACCGCTTGCATTGTCACGCTAAACAAAGATGTCTTGCACTATGCGAGTGTTGGTGACAGCGGTTTCATGTTGTTTCGAAACAACAAGTGCTTGTTCAGGTCTTCAACTCAACAGCACAGGTTTAACTGTCCTTTTCAGTTGGGGAATGCCCCAAGAAGTGATGATCCGAGCTCGGCTATGGGGCTGCCGGTTAGGGTGATTTCGGGAGATGTCATAGTTCTTGGGACTGATGGGTTGCTTGACAACATGTTTGGGAGGGAAATCGAGCAAGTTTTGGAGGACAAGACTGATGAAGGTGATGTGGATCCGGAGATGTTAGCTGGGATTATAGCGGAGTTGGCTTTGTATAATTCTTTTGATAGGTTCAATCCTAGCCCTTTTTCAGTTTCGGCGAAGAAGGCTGGAGTCAAGCATGTAGGAGGTAAGGTTGATGATATCACTGTCATAGTAGCTGCCATTATGGAGGAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

332

Amino Acids

36.6

Weight (kDa)

5.21

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	832
AciI	CCGC	4 cut(s)	347, 528, 585, 857
AclWI	GGATC	5 cut(s)	106, 265, 683, 824, 837
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	30, 203
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	6 cut(s)	44, 50, 154, 170, 630, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	3 cut(s)	696, 845, 977
AluI	AGCT	3 cut(s)	696, 845, 977
Alw21I	GWGCWC	2 cut(s)	325, 698
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	5 cut(s)	106, 265, 683, 824, 837
Ama87I	CYCGRG	2 cut(s)	385, 399
Aor13HI	TCCGGA	1 cut(s)	832
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	3 cut(s)	174, 709, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	758, 790
AseI	ATTAAT	1 cut(s)	465
AspA2I	CCTAGG	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	4 cut(s)	311, 590, 733, 833
AsuII	TTCGAA	1 cut(s)	601
AvaI	CYCGRG	2 cut(s)	385, 399
AvaII	GGWCC	1 cut(s)	189
AvrII	CCTAGG	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	698
BauI	CACGAG	1 cut(s)	114
BbsI	GAAGAC	2 cut(s)	309, 618
Bbv12I	GWGCWC	2 cut(s)	325, 698
BbvI	GCAGC	3 cut(s)	186, 696, 964
BccI	CCATC	3 cut(s)	241, 357, 749
BceAI	ACGGC	2 cut(s)	128, 184
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	3 cut(s)	162, 897, 997
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	3 cut(s)	175, 710, 978
BlnI	CCTAGG	1 cut(s)	161
BlsI	GCNGC	3 cut(s)	176, 711, 979
BmcAI	AGTACT	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	2 cut(s)	385, 399
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	831
BmsI	GCATC	2 cut(s)	186, 387
BoxI	GACNNNNGTC	2 cut(s)	80, 387
BpiI	GAAGAC	2 cut(s)	309, 618
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	2 cut(s)	477, 948
Bpu14I	TTCGAA	1 cut(s)	601
BpuEI	CTTGAG	2 cut(s)	83, 309
BsaBI	GATNNNNATC	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	5 cut(s)	78, 161, 273, 295, 514
BsaWI	WCCGGW	1 cut(s)	832
BsaXI	ACNNNNNCTCC	2 cut(s)	936, 966
Bse118I	RCCGGY	1 cut(s)	712
Bse8I	GATNNNNATC	1 cut(s)	828
BseAI	TCCGGA	1 cut(s)	832
BseDI	CCNNGG	5 cut(s)	78, 161, 273, 295, 514
BseGI	GGATG	2 cut(s)	368, 510
BseJI	GATNNNNATC	1 cut(s)	828
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	186, 696, 964
BseYI	CCCAGC	1 cut(s)	845
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	2 cut(s)	325, 698
BsiHKCI	CYCGRG	2 cut(s)	385, 399
BsiSI	CCGG	2 cut(s)	713, 833
BslFI	GGGAC	1 cut(s)	763
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	2 cut(s)	385, 399
Bsp119I	TTCGAA	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	325, 698
Bsp13I	TCCGGA	1 cut(s)	832
Bsp143I	GATC	6 cut(s)	98, 127, 147, 257, 688, 829
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	4 cut(s)	347, 528, 585, 857
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	832
BspHI	TCATGA	2 cut(s)	84, 408
BspLI	GGNNCC	1 cut(s)	831
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	5 cut(s)	106, 265, 683, 824, 837
BspT104I	TTCGAA	1 cut(s)	601
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	712
BssECI	CCNNGG	5 cut(s)	78, 161, 273, 295, 514
BssMI	GATC	6 cut(s)	98, 127, 147, 257, 688, 829
BssSI	CACGAG	1 cut(s)	114
BssT1I	CCWWGG	5 cut(s)	78, 161, 273, 295, 514
Bst2BI	CACGAG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	353, 653, 967
BstBI	TTCGAA	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	368, 510
BstKTI	GATC	6 cut(s)	101, 130, 150, 260, 691, 832
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	6 cut(s)	98, 127, 147, 257, 688, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	863, 923
BstNSI	RCATGY	2 cut(s)	775, 941
BstPAI	GACNNNNGTC	2 cut(s)	80, 387
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	186, 696, 964
BstV2I	GAAGAC	2 cut(s)	309, 618
BstX2I	RGATCY	2 cut(s)	257, 829
BstYI	RGATCY	2 cut(s)	257, 829
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	368, 510
BtsIMutI	CAGTG	1 cut(s)	963
Cac8I	GCNNGC	1 cut(s)	532
CciI	TCATGA	2 cut(s)	84, 408
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	29, 202
CviAII	CATG	7 cut(s)	79, 85, 409, 424, 592, 772, 938
CviQI	GTAC	2 cut(s)	29, 202
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	6 cut(s)	100, 129, 149, 259, 690, 831
DpnII	GATC	6 cut(s)	98, 127, 147, 257, 688, 829
EciI	GGCGGA	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	696
Eco130I	CCWWGG	5 cut(s)	78, 161, 273, 295, 514
Eco24I	GRGCYC	1 cut(s)	698
Eco31I	GGTCTC	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	961
Eco47I	GGWCC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	696
Eco57I	CTGAAG	1 cut(s)	263
Eco88I	CYCGRG	2 cut(s)	385, 399
EcoICRI	GAGCTC	1 cut(s)	696
EcoRV	GATATC	1 cut(s)	961
EcoT14I	CCWWGG	5 cut(s)	78, 161, 273, 295, 514
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	5 cut(s)	78, 161, 273, 295, 514
FaeI	CATG	7 cut(s)	82, 88, 412, 427, 595, 775, 941
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	7 cut(s)	78, 84, 408, 423, 591, 771, 937
FauNDI	CATATG	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	175, 710, 978
FokI	GGATG	2 cut(s)	375, 497
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	3 cut(s)	175, 710, 978
FspBI	CTAG	3 cut(s)	162, 897, 997
GluI	GCNGC	3 cut(s)	175, 710, 978
GsaI	CCCAGC	1 cut(s)	849
GsuI	CTGGAG	2 cut(s)	477, 948
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	713, 833
HgaI	GACGC	1 cut(s)	314
Hin1II	CATG	7 cut(s)	82, 88, 412, 427, 595, 775, 941
HincII	GTYRAC	2 cut(s)	75, 525
HindII	GTYRAC	2 cut(s)	75, 525
HinfI	GANTC	7 cut(s)	10, 214, 227, 383, 459, 930, 992
HpaII	CCGG	2 cut(s)	713, 833
HphI	GGTGA	4 cut(s)	311, 590, 733, 833
Hpy166II	GTNNAC	3 cut(s)	75, 433, 525
Hpy188I	TCNGA	3 cut(s)	232, 290, 693
Hpy8I	GTNNAC	3 cut(s)	75, 433, 525
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	164, 812, 916
HpyCH4III	ACNGT	3 cut(s)	353, 653, 967
HpyCH4V	TGCA	3 cut(s)	22, 534, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	863, 923
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	7 cut(s)	82, 88, 412, 427, 595, 775, 941
Kpn2I	TCCGGA	1 cut(s)	832
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	98, 127, 147, 257, 688, 829
Lsp1109I	GCAGC	3 cut(s)	186, 696, 964
LweI	GCATC	2 cut(s)	186, 387
MaeI	CTAG	3 cut(s)	162, 897, 997
MaeIII	GTNAC	2 cut(s)	538, 578
MalI	GATC	6 cut(s)	100, 129, 149, 259, 690, 831
MboI	GATC	6 cut(s)	98, 127, 147, 257, 688, 829
MboII	GAAGA	5 cut(s)	142, 256, 314, 618, 931
MflI	RGATCY	2 cut(s)	257, 829
MhlI	GDGCHC	2 cut(s)	325, 698
MluCI	AATT	2 cut(s)	37, 874
MlyI	GAGTC	5 cut(s)	4, 223, 377, 468, 939
MmeI	TCCRAC	3 cut(s)	40, 313, 462
MnlI	CCTC	9 cut(s)	133, 180, 460, 478, 481, 774, 796, 938, 982
MroI	TCCGGA	1 cut(s)	832
MseI	TTAA	2 cut(s)	465, 648
MslI	CAYNNNNRTG	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	585
MspI	CCGG	2 cut(s)	713, 833
Mva1269I	GAATGC	1 cut(s)	676
MwoI	GCNNNNNNNGC	2 cut(s)	863, 923
NcoI	CCATGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	6 cut(s)	98, 127, 147, 257, 688, 829
NlaIII	CATG	7 cut(s)	82, 88, 412, 427, 595, 775, 941
NlaIV	GGNNCC	1 cut(s)	831
NmeAIII	GCCGAG	1 cut(s)	677
NmuCI	GTSAC	2 cut(s)	538, 578
NspI	RCATGY	2 cut(s)	775, 941
NspV	TTCGAA	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	399
PagI	TCATGA	2 cut(s)	84, 408
PciI	ACATGT	1 cut(s)	771
PctI	GAATGC	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	176, 711, 979
PleI	GAGTC	5 cut(s)	4, 222, 377, 467, 938
PpsI	GAGTC	5 cut(s)	4, 222, 377, 467, 938
PscI	ACATGT	1 cut(s)	771
PshAI	GACNNNNGTC	2 cut(s)	80, 387
PshBI	ATTAAT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	845
PspN4I	GGNNCC	1 cut(s)	831
PspPI	GGNCC	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	257, 829
RsaI	GTAC	2 cut(s)	30, 203
RsaNI	GTAC	2 cut(s)	29, 202
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	698
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	465, 648
SatI	GCNGC	3 cut(s)	175, 710, 978
Sau3AI	GATC	6 cut(s)	98, 127, 147, 257, 688, 829
Sau96I	GGNCC	1 cut(s)	189
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	5 cut(s)	4, 223, 377, 468, 939
SduI	GDGCHC	2 cut(s)	325, 698
SfaNI	GCATC	2 cut(s)	186, 387
SfcI	CTRYAG	1 cut(s)	20
Sfr274I	CTCGAG	1 cut(s)	399
SfuI	TTCGAA	1 cut(s)	601
SinI	GGWCC	1 cut(s)	189
SlaI	CTCGAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	3 cut(s)	62, 324, 399
SmoI	CTYRAG	3 cut(s)	62, 324, 399
Sse9I	AATT	2 cut(s)	37, 874
SsiI	CCGC	4 cut(s)	347, 528, 585, 857
SspMI	CTAG	3 cut(s)	162, 897, 997
SstI	GAGCTC	1 cut(s)	698
StyI	CCWWGG	5 cut(s)	78, 161, 273, 295, 514
TaaI	ACNGT	3 cut(s)	353, 653, 967
TaqI	TCGA	5 cut(s)	74, 381, 400, 601, 789
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	2 cut(s)	37, 874
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	465, 648
Tru9I	TTAA	2 cut(s)	465, 648
TscAI	CASTG	1 cut(s)	970
TseFI	GTSAC	2 cut(s)	538, 578
TseI	GCWGC	3 cut(s)	174, 709, 977
Tsp45I	GTSAC	2 cut(s)	538, 578
TspDTI	ATGAA	6 cut(s)	101, 240, 304, 428, 580, 831
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	970
VpaK11BI	GGWCC	1 cut(s)	189
VspI	ATTAAT	1 cut(s)	465
XceI	RCATGY	2 cut(s)	775, 941
XhoI	CTCGAG	1 cut(s)	399
XmaJI	CCTAGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	3 cut(s)	162, 897, 997
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.