MD08G1210800.v1.1

protein phosphatase 2C 55

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
27424790 .. 27426932
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1210800.v1.1.491

Sequence Viewer

Length: 1917 bp
ATGTTGATTGTTAAGAAGCCAAGGCTTGAAGACCCCCGCTTCATCTTCCAGGAGAAGCAAACTATTGGCGTGGCGGACGGAGTCGATGCCCGTGCCGGTGACTACGCAAGGGAACAGATGATGCTGACGGAAGCTACTTTGAGTTTATTAATGTTGAAGTACGTAAACTACTATGGTATCAGCGACAACAATAATTGCTATGGTCAAGAAATGAAGACAAACCTGCAGGATATGGTTTGTGGGTCGGTTTATCTACCCAAAGATAACAAGTTAGGCGAAGACGCTCACTTCATCTGCCCGGATAAGCAGACTATCGGCGTGGCGGACGGCGTCGGCGGTTGGGCCAAGAAAGGCATCGACGCGGGTCGGTACGCAAGGGAACTCATGAACAATTCCTTTATCGCCGTCCATAATCCGAATAACATCAACGTACAGAAAAGAAAAAGAAAGGTCGCGGATATGATCGGAGCCGTTGATCCAAGAAAAGTGTTGCAGGAAACTTATTCTAAGACCAAGGAGAAAGGCTCGTCGACCGCTTGCATCCTCAGCCTTAACAAAGAGAGCGGAGTCTTGCATGCTGTGAACGTTGGAGACAGTGGGTTCTTGCTATTTAGGAACAACAAGGTTGTGTACCAATCTCCAACTCAACAACGCAGGTTCAACTGTCCATATCAGTTGGGGAATGGCATCAGCAGTGACCGCCCTGATTCCGCTTGGGAGGAGTGCATTCAGACAATCCCCGGAGACATCGTAGTGCTTGGGACTGATGGCTTGCTGGACAACATGTTTCCAAGTGAGATTGAGAAGGTTCTCGTACAAGGTGGTTGTGGTGGTCGTGGTGGTGATCATGATCTTGATCTTGCTTGTGGCGCGTTGGCTTCGAGCATCGCCAATCTAGCTCTCTATAACTCGTTTGATAAGCAAAACCCTAGCCCTTTTCAGAAAACGCTAGAAAGGCTGGGTTCGAGCACAAAAGAGGCAAGATCGACGACATTACTGTTATTGTTGCTCAAGGAGCAGATGATGCTGACGGAAGCTACTTTGAGTTTATTAATGTTGAAGTACGTAAACTACAATGGTATCATCAACAATAATTGCCATGGTCAAGAAACAAAGAGAAACCTGCACGAGATGGTTTGTGGGTCGGTTTATCTTCCCAAAGATAACAATTTAGGCGAAGACGCTCACTTCATCTGCCCGGATAAGCAGACTATCGGTGTGGCGGGCGGCGTCGGCAGTTGGGCCAAGAAAGGCATCGACGCGGGTCAGTACGCGAGAGAACTCATGAACAATGCCTTCATCGCCGTCCATAATCCGAATAACATCGACGAACAGAAAAGAAAAAGAAAGGTCGCGGATATGATCGGAGCCGTTGATCCAAGAAAAGTGTTGCAGGAAACTTATACAAAGACCAAGGAGAAAGGCTCGTCGACTGCTTGCATCCTCAGCCTTAACAAAGAGAGCGGAGTCTTGCATGCTGTGAACGTTGGGGACAGTGGGTTCTTGCTATTTAGGAACAAGAAGTTTGTGTACCAATCTCCAACTCAACAACGCAGGTTCAACTCTCCCAATCAGTTGGGGAACGGCATCAGCAGTGACCGCCCTGATTCTGCTTGGGAGGAGTGGATTCAGACAGTCCCTGGAGACATCGTAGTGCTTGGGACTGATGGCTTACTGGACAACATGTTTCCAAGTGAGATTGAGAAGGTTCTTGTACAAGGTGGTGGTGGTGATCGTGATCTTGATCTTGGTTGTGGTGAGTTGGCTTCGAGCATCGCCAATCTAGCTCTCTATAACTCGTTCGACAAACACAGCCCTAGCCCTTTTTCAGAAAACGCTAGAAAGGCTGGGTTCGAGCACAAAGGAGGCAAGATCGACGACATTACCGTTATTGTTGCTCAAGTTGTGGCTTTGTAG
Functional Annotation

Protein Analysis

639

Amino Acids

69.95

Weight (kDa)

6.45

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 231, 645, 1131, 1545
AccBSI CCGCTC 2 cut(s) 564, 1464
AccI GTMKAC 2 cut(s) 530, 1430
AccII CGCG 6 cut(s) 362, 455, 872, 1262, 1274, 1355
AclI AACGTT 2 cut(s) 585, 1485
AclWI GGATC 2 cut(s) 470, 1370
AcyI GRCGYC 2 cut(s) 330, 1230
AfaI GTAC 9 cut(s) 161, 371, 432, 632, 816, 1064, 1271, 1532, 1716
AflIII ACRYGT 2 cut(s) 783, 1683
AgsI TTSAA 5 cut(s) 29, 157, 661, 1060, 1561
AjnI CCWGG 2 cut(s) 48, 1639
AloI GAACNNNNNNTCC 2 cut(s) 1484, 1516
AluBI AGCT 4 cut(s) 134, 899, 1037, 1787
AluI AGCT 4 cut(s) 134, 899, 1037, 1787
Alw21I GWGCWC 2 cut(s) 971, 1860
Alw26I GTCTC 3 cut(s) 585, 738, 1638
AlwI GGATC 2 cut(s) 470, 1370
AlwNI CAGNNNCTG 1 cut(s) 1640
AoxI GGCC 2 cut(s) 342, 1242
AseI ATTAAT 2 cut(s) 149, 1052
AspLEI GCGC 1 cut(s) 872
AspS9I GGNCC 2 cut(s) 342, 1242
AsuC2I CCSGG 3 cut(s) 299, 741, 1199
AsuHPI GGTGA 4 cut(s) 110, 854, 1742, 1769
BaeI ACNNNNGTAYC 4 cut(s) 160, 193, 1063, 1096
BarI GAAGNNNNNNTAC 2 cut(s) 1514, 1546
BauI CACGAG 1 cut(s) 1127
BbsI GAAGAC 4 cut(s) 36, 221, 285, 1185
Bbv12I GWGCWC 2 cut(s) 971, 1860
BbvCI CCTCAGC 2 cut(s) 545, 1445
BccI CCATC 3 cut(s) 761, 1126, 1661
BceAI ACGGC 6 cut(s) 343, 389, 455, 1289, 1355, 1600
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 2 cut(s) 50, 1641
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 3 cut(s) 299, 741, 1199
BcoDI GTCTC 3 cut(s) 585, 738, 1638
BfaI CTAG 6 cut(s) 896, 930, 950, 1784, 1818, 1839
BfmI CTRYAG 1 cut(s) 224
BfuAI ACCTGC 4 cut(s) 231, 645, 1131, 1545
BisI GCNGC 1 cut(s) 1228
BlsI GCNGC 1 cut(s) 1229
Bme1390I CCNGG 5 cut(s) 50, 299, 741, 1199, 1641
BmgT120I GGNCC 2 cut(s) 342, 1242
BmiI GGNNCC 2 cut(s) 469, 1369
BmrFI CCNGG 5 cut(s) 50, 299, 741, 1199, 1641
BoxI GACNNNNGTC 2 cut(s) 363, 1263
BpiI GAAGAC 4 cut(s) 36, 221, 285, 1185
BplI GAGNNNNNCTC 4 cut(s) 509, 541, 1409, 1441
BpmI CTGGAG 1 cut(s) 1662
Bpu10I CCTNAGC 2 cut(s) 545, 1445
BpuEI CTTGAG 2 cut(s) 995, 1884
BpuMI CCSGG 3 cut(s) 299, 741, 1199
BsaAI YACGTR 2 cut(s) 163, 1066
BsaBI GATNNNNATC 4 cut(s) 849, 855, 1737, 1743
BsaHI GRCGYC 2 cut(s) 330, 1230
BsaJI CCNNGG 6 cut(s) 20, 513, 739, 1099, 1413, 1639
BsaXI ACNNNNNCTCC 4 cut(s) 735, 765, 1635, 1665
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 1680
Bse8I GATNNNNATC 4 cut(s) 849, 855, 1737, 1743
BseBI CCWGG 2 cut(s) 50, 1641
BseDI CCNNGG 6 cut(s) 20, 513, 739, 1099, 1413, 1639
BseGI GGATG 2 cut(s) 540, 1440
BseJI GATNNNNATC 4 cut(s) 849, 855, 1737, 1743
BseMII CTCAG 2 cut(s) 559, 1459
BseNI ACTGG 1 cut(s) 1680
BseRI GAGGAG 2 cut(s) 734, 1634
BseYI CCCAGC 2 cut(s) 958, 1847
BsgI GTGCAG 1 cut(s) 1109
Bsh1236I CGCG 6 cut(s) 362, 455, 872, 1262, 1274, 1355
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 2 cut(s) 344, 1244
BsiEI CGRYCG 1 cut(s) 534
BsiHKAI GWGCWC 2 cut(s) 971, 1860
BsiSI CCGG 4 cut(s) 96, 299, 741, 1199
BslFI GGGAC 4 cut(s) 775, 1505, 1622, 1675
BsmAI GTCTC 3 cut(s) 585, 738, 1638
BsmFI GGGAC 4 cut(s) 775, 1505, 1622, 1675
BsmI GAATGC 1 cut(s) 726
BsnI GGCC 2 cut(s) 344, 1244
Bsp1286I GDGCHC 2 cut(s) 971, 1860
Bsp1407I TGTACA 1 cut(s) 1714
Bsp19I CCATGG 1 cut(s) 1099
BspANI GGCC 2 cut(s) 344, 1244
BspCNI CTCAG 2 cut(s) 558, 1458
BspFNI CGCG 6 cut(s) 362, 455, 872, 1262, 1274, 1355
BspHI TCATGA 3 cut(s) 384, 847, 1284
BspLI GGNNCC 2 cut(s) 469, 1369
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 4 cut(s) 231, 645, 1131, 1545
BspPI GGATC 2 cut(s) 470, 1370
BsrBI CCGCTC 2 cut(s) 564, 1464
BsrFI RCCGGY 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 1714
BsrI ACTGG 1 cut(s) 1680
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 6 cut(s) 20, 513, 739, 1099, 1413, 1639
BssNI GRCGYC 2 cut(s) 330, 1230
BssSI CACGAG 1 cut(s) 1127
BssT1I CCWWGG 4 cut(s) 20, 513, 1099, 1413
Bst2BI CACGAG 1 cut(s) 1127
Bst2UI CCWGG 2 cut(s) 50, 1641
Bst4CI ACNGT 6 cut(s) 596, 665, 999, 1496, 1636, 1888
BstACI GRCGYC 2 cut(s) 330, 1230
BstAPI GCANNNNNTGC 1 cut(s) 1024
BstAUI TGTACA 1 cut(s) 1714
BstBAI YACGTR 2 cut(s) 163, 1066
BstC8I GCNNGC 6 cut(s) 538, 576, 773, 1225, 1438, 1476
BstDEI CTNAG 3 cut(s) 507, 545, 1445
BstDSI CCRYGG 1 cut(s) 1099
BstF5I GGATG 2 cut(s) 540, 1440
BstFNI CGCG 6 cut(s) 362, 455, 872, 1262, 1274, 1355
BstHHI GCGC 1 cut(s) 872
BstMAI GTCTC 3 cut(s) 585, 738, 1638
BstMCI CGRYCG 1 cut(s) 534
BstNI CCWGG 2 cut(s) 50, 1641
BstNSI RCATGY 4 cut(s) 578, 787, 1478, 1687
BstPAI GACNNNNGTC 2 cut(s) 363, 1263
BstSCI CCNGG 5 cut(s) 48, 297, 739, 1197, 1639
BstSFI CTRYAG 1 cut(s) 224
BstSNI TACGTA 2 cut(s) 163, 1066
BstUI CGCG 6 cut(s) 362, 455, 872, 1262, 1274, 1355
BstV2I GAAGAC 4 cut(s) 36, 221, 285, 1185
BstXI CCANNNNNNTGG 1 cut(s) 1576
BsuRI GGCC 2 cut(s) 344, 1244
BtgI CCRYGG 1 cut(s) 1099
BtgZI GCGATG 3 cut(s) 871, 1285, 1759
BtsCI GGATG 2 cut(s) 540, 1440
BtsI GCAGTG 2 cut(s) 700, 1600
BtsIMutI CAGTG 4 cut(s) 601, 700, 1501, 1600
BveI ACCTGC 4 cut(s) 231, 645, 1131, 1545
Cac8I GCNNGC 6 cut(s) 538, 576, 773, 1225, 1438, 1476
CaiI CAGNNNCTG 1 cut(s) 1640
CciI TCATGA 3 cut(s) 384, 847, 1284
CfoI GCGC 1 cut(s) 872
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 342, 1242
CseI GACGC 6 cut(s) 290, 319, 368, 1190, 1219, 1268
Csp6I GTAC 9 cut(s) 160, 370, 431, 631, 815, 1063, 1270, 1531, 1715
CviAII CATG 8 cut(s) 385, 575, 784, 848, 1100, 1285, 1475, 1684
CviQI GTAC 9 cut(s) 160, 370, 431, 631, 815, 1063, 1270, 1531, 1715
DdeI CTNAG 3 cut(s) 507, 545, 1445
EciI GGCGGA 2 cut(s) 89, 338
Eco105I TACGTA 2 cut(s) 163, 1066
Eco130I CCWWGG 4 cut(s) 20, 513, 1099, 1413
EcoRII CCWGG 2 cut(s) 48, 1639
EcoT14I CCWWGG 4 cut(s) 20, 513, 1099, 1413
ErhI CCWWGG 4 cut(s) 20, 513, 1099, 1413
FaeI CATG 8 cut(s) 388, 578, 787, 851, 1103, 1288, 1478, 1687
FaqI GGGAC 4 cut(s) 775, 1505, 1622, 1675
FatI CATG 8 cut(s) 384, 574, 783, 847, 1099, 1284, 1474, 1683
FauI CCCGC 4 cut(s) 44, 355, 1216, 1255
FbaI TGATCA 1 cut(s) 844
FblI GTMKAC 2 cut(s) 530, 1430
Fnu4HI GCNGC 1 cut(s) 1228
FokI GGATG 2 cut(s) 527, 1427
Fsp4HI GCNGC 1 cut(s) 1228
FspBI CTAG 6 cut(s) 896, 930, 950, 1784, 1818, 1839
GlaI GCGC 1 cut(s) 871
GluI GCNGC 1 cut(s) 1228
GsaI CCCAGC 2 cut(s) 962, 1851
GsuI CTGGAG 1 cut(s) 1662
HaeIII GGCC 2 cut(s) 344, 1244
HapII CCGG 4 cut(s) 96, 299, 741, 1199
HgaI GACGC 6 cut(s) 290, 319, 368, 1190, 1219, 1268
HhaI GCGC 1 cut(s) 872
Hin1I GRCGYC 2 cut(s) 330, 1230
Hin1II CATG 8 cut(s) 388, 578, 787, 851, 1103, 1288, 1478, 1687
Hin6I GCGC 1 cut(s) 870
HinP1I GCGC 1 cut(s) 870
HincII GTYRAC 2 cut(s) 531, 1431
HindII GTYRAC 2 cut(s) 531, 1431
HinfI GANTC 6 cut(s) 81, 567, 707, 1467, 1607, 1627
HpaII CCGG 4 cut(s) 96, 299, 741, 1199
HphI GGTGA 4 cut(s) 110, 854, 1742, 1769
Hpy166II GTNNAC 8 cut(s) 166, 531, 583, 631, 1069, 1431, 1483, 1531
Hpy188I TCNGA 8 cut(s) 417, 467, 732, 942, 1317, 1367, 1632, 1831
Hpy188III TCNNGA 8 cut(s) 206, 385, 848, 854, 1106, 1285, 1736, 1742
Hpy8I GTNNAC 8 cut(s) 166, 531, 583, 631, 1069, 1431, 1483, 1531
Hpy99I CGWCG 9 cut(s) 335, 362, 532, 991, 1235, 1262, 1331, 1432, 1880
HpyAV CCTTC 3 cut(s) 799, 1306, 1699
HpyCH4III ACNGT 6 cut(s) 596, 665, 999, 1496, 1636, 1888
HpyCH4IV ACGT 5 cut(s) 162, 429, 585, 1065, 1485
HpyCH4V TGCA 9 cut(s) 226, 493, 540, 574, 726, 1126, 1393, 1440, 1474
HpyF3I CTNAG 3 cut(s) 507, 545, 1445
HpySE526I ACGT 5 cut(s) 162, 429, 585, 1065, 1485
Hsp92I GRCGYC 2 cut(s) 330, 1230
Hsp92II CATG 8 cut(s) 388, 578, 787, 851, 1103, 1288, 1478, 1687
HspAI GCGC 1 cut(s) 870
Ksp22I TGATCA 1 cut(s) 844
LmnI GCTCC 3 cut(s) 467, 1015, 1367
MaeI CTAG 6 cut(s) 896, 930, 950, 1784, 1818, 1839
MaeII ACGT 5 cut(s) 162, 429, 585, 1065, 1485
MaeIII GTNAC 3 cut(s) 98, 695, 1595
MbiI CCGCTC 2 cut(s) 564, 1464
MboII GAAGA 6 cut(s) 37, 41, 226, 290, 1145, 1190
MhlI GDGCHC 2 cut(s) 971, 1860
MluCI AATT 4 cut(s) 193, 391, 1093, 1168
MlyI GAGTC 3 cut(s) 90, 576, 1476
MmeI TCCRAC 3 cut(s) 568, 665, 1565
MnlI CCTC 6 cut(s) 554, 712, 970, 1454, 1612, 1859
MseI TTAA 5 cut(s) 12, 149, 552, 1052, 1452
MslI CAYNNNNRTG 2 cut(s) 752, 1652
MspI CCGG 4 cut(s) 96, 299, 741, 1199
MspR9I CCNGG 5 cut(s) 50, 299, 741, 1199, 1641
Mva1269I GAATGC 1 cut(s) 726
MvaI CCWGG 2 cut(s) 50, 1641
MvnI CGCG 6 cut(s) 362, 455, 872, 1262, 1274, 1355
NciI CCSGG 3 cut(s) 299, 741, 1199
NcoI CCATGG 1 cut(s) 1099
NlaIII CATG 8 cut(s) 388, 578, 787, 851, 1103, 1288, 1478, 1687
NlaIV GGNNCC 2 cut(s) 469, 1369
NmuCI GTSAC 3 cut(s) 98, 695, 1595
NspI RCATGY 4 cut(s) 578, 787, 1478, 1687
PaeI GCATGC 2 cut(s) 578, 1478
PagI TCATGA 3 cut(s) 384, 847, 1284
PciI ACATGT 2 cut(s) 783, 1683
PcsI WCGNNNNNNNCGW 1 cut(s) 1884
PctI GAATGC 1 cut(s) 726
PfeI GAWTC 3 cut(s) 707, 1607, 1627
PflFI GACNNNGTC 2 cut(s) 80, 329
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 1 cut(s) 1229
PleI GAGTC 3 cut(s) 89, 575, 1475
PpsI GAGTC 3 cut(s) 89, 575, 1475
Ppu21I YACGTR 2 cut(s) 163, 1066
PscI ACATGT 2 cut(s) 783, 1683
PshAI GACNNNNGTC 2 cut(s) 363, 1263
PshBI ATTAAT 2 cut(s) 149, 1052
Psp1406I AACGTT 2 cut(s) 585, 1485
Psp6I CCWGG 2 cut(s) 48, 1639
PspFI CCCAGC 2 cut(s) 958, 1847
PspGI CCWGG 2 cut(s) 48, 1639
PspN4I GGNNCC 2 cut(s) 469, 1369
PspPI GGNCC 2 cut(s) 342, 1242
PstI CTGCAG 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 1640
PsyI GACNNNGTC 2 cut(s) 80, 329
RsaI GTAC 9 cut(s) 161, 371, 432, 632, 816, 1064, 1271, 1532, 1716
RsaNI GTAC 9 cut(s) 160, 370, 431, 631, 815, 1063, 1270, 1531, 1715
RseI CAYNNNNRTG 2 cut(s) 752, 1652
SalI GTCGAC 2 cut(s) 529, 1429
SaqAI TTAA 5 cut(s) 12, 149, 552, 1052, 1452
SatI GCNGC 1 cut(s) 1228
Sau96I GGNCC 2 cut(s) 342, 1242
SbfI CCTGCAGG 1 cut(s) 228
SchI GAGTC 3 cut(s) 90, 576, 1476
ScrFI CCNGG 5 cut(s) 50, 299, 741, 1199, 1641
SdaI CCTGCAGG 1 cut(s) 228
SduI GDGCHC 2 cut(s) 971, 1860
SfcI CTRYAG 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 752, 1652
SmlI CTYRAG 2 cut(s) 1010, 1899
SmoI CTYRAG 2 cut(s) 1010, 1899
SnaBI TACGTA 2 cut(s) 163, 1066
SphI GCATGC 2 cut(s) 578, 1478
Sse8387I CCTGCAGG 1 cut(s) 228
Sse9I AATT 4 cut(s) 193, 391, 1093, 1168
SspMI CTAG 6 cut(s) 896, 930, 950, 1784, 1818, 1839
StyD4I CCNGG 5 cut(s) 48, 297, 739, 1197, 1639
StyI CCWWGG 4 cut(s) 20, 513, 1099, 1413
TaaI ACNGT 6 cut(s) 596, 665, 999, 1496, 1636, 1888
TaiI ACGT 5 cut(s) 165, 432, 588, 1068, 1488
TasI AATT 4 cut(s) 193, 391, 1093, 1168
TatI WGTACW 1 cut(s) 1714
TauI GCSGC 1 cut(s) 1230
TfiI GAWTC 3 cut(s) 707, 1607, 1627
Tru1I TTAA 5 cut(s) 12, 149, 552, 1052, 1452
Tru9I TTAA 5 cut(s) 12, 149, 552, 1052, 1452
TscAI CASTG 4 cut(s) 601, 700, 1501, 1600
TseFI GTSAC 3 cut(s) 98, 695, 1595
Tsp45I GTSAC 3 cut(s) 98, 695, 1595
TspDTI ATGAA 7 cut(s) 31, 227, 280, 401, 1180, 1288, 1301
TspGWI ACGGA 3 cut(s) 93, 143, 1046
TspRI CASTG 4 cut(s) 601, 700, 1501, 1600
Tth111I GACNNNGTC 2 cut(s) 80, 329
VspI ATTAAT 2 cut(s) 149, 1052
XceI RCATGY 4 cut(s) 578, 787, 1478, 1687
XmiI GTMKAC 2 cut(s) 530, 1430
XspI CTAG 6 cut(s) 896, 930, 950, 1784, 1818, 1839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.