Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Reverse (-)

12218176 .. 12219606

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032222

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGACTCTCCAACTGCAGAGAGTACTCCACAATTTTGAACTTCAAGGCAATAATCTTGAGAGTTCGTCGACCATGGTCATGAACTATAATGGATCAATCAAACGCACACGAGCCGAACCTGATCAAGAGCAAGAGGCCGTGATCTTCAAGAAACCTAGGGTTGAAGGCAGCAAACCAGAGAGGTCCGTGATGCCGTACCAAGAACTGAGTCCAAACTATGAATCTGAAACAAGGCTGAAGATGGTATCTGGATCTTTCTATTTGCCCAAGGAAAACGAACTCCGACCCCAAGGTGAAGGCGCTCACTTCATATGTGCAGAAGAAAACACCATTGGAGTGGCGGACGGTGTTGGTGGATGGGCCAACAAGGGCATCGACTCGGGTCTCTACGCTCGAGAACTAATGATGAACTCGGTCATGGCGGTTCACAATCAACACATGACCTCATCAGGAGTCATTAATCCAAGAAAAGTGTTGGAGGAGGCTTTCTCAAACACCAAGAACATCCAAGGCTCGTCAACCGCTTGCATTGTCACGCTAAACAAAGATGTTTTGCATTATGCGAATGTTGGTGACAGCGGTTTCATGTTGTTTCGAAACAACAAGTGCTTGTTCAGGTCTTCAGCTCAACAACACAGGTTTAACTGTCCTTTTCAGTTGGGGAACGCCCCAAGAAGTGATCATCCGAGCTCGGCTATGGGGGTGCCGGTTATGGTGATTCCGGGAGATGTCATAGTTCTTGGGACTGATGGGTTGCTTGATAACATGTTTGGGAGGGAAATCGAGCAAGTTTTGGAGGACAAGACTGATGTAGGTGATGTGGATCCGGAGATGTTGGCTGGGATTATAGCGGAGTTGGCTTTGTATAATTCTTTTGATAGGTTCAATCCTAGCCCTTTTTCAATTTCGGCGACGAAGGCTGGAGTCAACCATGTAGGAGGTAAGGTTGATGATATCACTGTCATAGTAGCTGCCATTATGGAGGAGTCCTGGGAGGGACTCAAGAGTTGGACTACAACTCTGCAACATCAAGAAGCTAACAGGACCATGGATATTGAACTGAATTGGTTGCCATCGCACAAGGCACATGATACATGTGTAATTATACAAGTTGGTGATAGCTCTGTGATAGAGAAGATTAGTGGTGTTGAGGATGAAGATTGGACTGGTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

393

Amino Acids

43.28

Weight (kDa)

5.0

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	826
AciI	CCGC	5 cut(s)	341, 422, 522, 579, 851
AclWI	GGATC	4 cut(s)	100, 259, 818, 831
AcuI	CTGAAG	2 cut(s)	257, 606
AfaI	GTAC	2 cut(s)	24, 197
AflIII	ACRYGT	2 cut(s)	765, 1094
AgsI	TTSAA	7 cut(s)	38, 44, 148, 164, 886, 903, 1058
AjnI	CCWGG	1 cut(s)	989
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	5 cut(s)	626, 690, 971, 1037, 1122
AluI	AGCT	5 cut(s)	626, 690, 971, 1037, 1122
Alw21I	GWGCWC	1 cut(s)	692
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	4 cut(s)	100, 259, 818, 831
Ama87I	CYCGRG	2 cut(s)	379, 393
Aor13HI	TCCGGA	1 cut(s)	826
AoxI	GGCC	2 cut(s)	135, 360
ApeKI	GCWGC	2 cut(s)	168, 971
AseI	ATTAAT	1 cut(s)	459
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	3 cut(s)	183, 360, 1044
AsuC2I	CCSGG	1 cut(s)	723
AsuHPI	GGTGA	5 cut(s)	305, 584, 727, 827, 1127
AsuII	TTCGAA	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	379, 393
AvaII	GGWCC	2 cut(s)	183, 1044
AvrII	CCTAGG	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	1083, 1116
BamHI	GGATCC	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	692
BauI	CACGAG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	692
BbvI	GCAGC	2 cut(s)	180, 958
BccI	CCATC	4 cut(s)	235, 351, 743, 1081
BceAI	ACGGC	2 cut(s)	122, 178
BciT130I	CCWGG	1 cut(s)	991
BclI	TGATCA	2 cut(s)	121, 679
BcnI	CCSGG	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	156, 891
BfmI	CTRYAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	2 cut(s)	169, 972
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	2 cut(s)	170, 973
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	723, 991
Bme18I	GGWCC	2 cut(s)	183, 1044
BmeT110I	CYCGRG	2 cut(s)	379, 393
BmgT120I	GGNCC	3 cut(s)	183, 360, 1044
BmiI	GGNNCC	2 cut(s)	705, 825
BmrFI	CCNGG	2 cut(s)	723, 991
BmsI	GCATC	2 cut(s)	180, 381
BoxI	GACNNNNGTC	2 cut(s)	74, 381
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	1 cut(s)	942
Bpu14I	TTCGAA	1 cut(s)	595
BpuEI	CTTGAG	2 cut(s)	77, 986
BpuMI	CCSGG	1 cut(s)	723
BsaBI	GATNNNNATC	1 cut(s)	822
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	7 cut(s)	72, 155, 267, 289, 508, 990, 1047
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	1 cut(s)	1171
Bse8I	GATNNNNATC	1 cut(s)	822
BseAI	TCCGGA	1 cut(s)	826
BseBI	CCWGG	1 cut(s)	991
BseDI	CCNNGG	7 cut(s)	72, 155, 267, 289, 508, 990, 1047
BseGI	GGATG	4 cut(s)	362, 504, 682, 1159
BseJI	GATNNNNATC	1 cut(s)	822
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	1171
BseRI	GAGGAG	2 cut(s)	494, 998
BseXI	GCAGC	2 cut(s)	180, 958
BseYI	CCCAGC	1 cut(s)	839
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	137, 362
BshNI	GGYRCC	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	692
BsiHKCI	CYCGRG	2 cut(s)	379, 393
BsiSI	CCGG	3 cut(s)	707, 722, 827
BslFI	GGGAC	2 cut(s)	757, 1011
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	2 cut(s)	757, 1011
BsnI	GGCC	2 cut(s)	137, 362
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	2 cut(s)	379, 393
Bsp119I	TTCGAA	1 cut(s)	595
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp13I	TCCGGA	1 cut(s)	826
Bsp143I	GATC	6 cut(s)	92, 121, 141, 251, 679, 823
Bsp19I	CCATGG	2 cut(s)	72, 1047
BspACI	CCGC	5 cut(s)	341, 422, 522, 579, 851
BspANI	GGCC	2 cut(s)	137, 362
BspCNI	CTCAG	1 cut(s)	198
BspEI	TCCGGA	1 cut(s)	826
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	705, 825
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	4 cut(s)	100, 259, 818, 831
BspT104I	TTCGAA	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	703
BspTNI	GGTCTC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	1 cut(s)	1171
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	7 cut(s)	72, 155, 267, 289, 508, 990, 1047
BssMI	GATC	6 cut(s)	92, 121, 141, 251, 679, 823
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	6 cut(s)	72, 155, 267, 289, 508, 1047
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	991
Bst4CI	ACNGT	3 cut(s)	347, 647, 961
BstBI	TTCGAA	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	2 cut(s)	72, 1047
BstF5I	GGATG	4 cut(s)	362, 504, 682, 1159
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	6 cut(s)	95, 124, 144, 254, 682, 826
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	6 cut(s)	92, 121, 141, 251, 679, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	857, 917
BstNI	CCWGG	1 cut(s)	991
BstNSI	RCATGY	2 cut(s)	769, 1098
BstPAI	GACNNNNGTC	2 cut(s)	74, 381
BstSCI	CCNGG	2 cut(s)	721, 989
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	180, 958
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	2 cut(s)	251, 823
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	2 cut(s)	251, 823
BsuRI	GGCC	2 cut(s)	137, 362
BtgI	CCRYGG	2 cut(s)	72, 1047
BtgZI	GCGATG	1 cut(s)	1059
BtsCI	GGATG	4 cut(s)	362, 504, 682, 1159
BtsIMutI	CAGTG	1 cut(s)	957
Cac8I	GCNNGC	1 cut(s)	526
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	3 cut(s)	183, 360, 1044
Csp6I	GTAC	2 cut(s)	23, 196
CviQI	GTAC	2 cut(s)	23, 196
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	6 cut(s)	94, 123, 143, 253, 681, 825
DpnII	GATC	6 cut(s)	92, 121, 141, 251, 679, 823
EciI	GGCGGA	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	690
Eco130I	CCWWGG	6 cut(s)	72, 155, 267, 289, 508, 1047
Eco24I	GRGCYC	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	183, 1044
Eco53kI	GAGCTC	1 cut(s)	690
Eco57I	CTGAAG	2 cut(s)	257, 606
Eco88I	CYCGRG	2 cut(s)	379, 393
EcoICRI	GAGCTC	1 cut(s)	690
EcoRII	CCWGG	1 cut(s)	989
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	6 cut(s)	72, 155, 267, 289, 508, 1047
EcoT38I	GRGCYC	1 cut(s)	692
ErhI	CCWWGG	6 cut(s)	72, 155, 267, 289, 508, 1047
FaqI	GGGAC	2 cut(s)	757, 1011
FauNDI	CATATG	1 cut(s)	311
FbaI	TGATCA	2 cut(s)	121, 679
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	169, 972
FokI	GGATG	4 cut(s)	369, 491, 669, 1166
FriOI	GRGCYC	1 cut(s)	692
Fsp4HI	GCNGC	2 cut(s)	169, 972
FspBI	CTAG	2 cut(s)	156, 891
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	169, 972
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	942
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	137, 362
HapII	CCGG	3 cut(s)	707, 722, 827
HhaI	GCGC	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	3 cut(s)	69, 519, 928
HindII	GTYRAC	3 cut(s)	69, 519, 928
HinfI	GANTC	9 cut(s)	4, 208, 221, 377, 453, 718, 924, 986, 999
HpaII	CCGG	3 cut(s)	707, 722, 827
HphI	GGTGA	5 cut(s)	305, 584, 727, 827, 1127
Hpy166II	GTNNAC	4 cut(s)	69, 427, 519, 928
Hpy188I	TCNGA	3 cut(s)	226, 284, 687
Hpy8I	GTNNAC	4 cut(s)	69, 427, 519, 928
Hpy99I	CGWCG	2 cut(s)	70, 916
HpyAV	CCTTC	3 cut(s)	158, 290, 910
HpyCH4III	ACNGT	3 cut(s)	347, 647, 961
HpyCH4V	TGCA	5 cut(s)	16, 317, 528, 556, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	857, 917
HpyF3I	CTNAG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	300
Kpn2I	TCCGGA	1 cut(s)	826
Ksp22I	TGATCA	2 cut(s)	121, 679
Kzo9I	GATC	6 cut(s)	92, 121, 141, 251, 679, 823
Lsp1109I	GCAGC	2 cut(s)	180, 958
LweI	GCATC	2 cut(s)	180, 381
MaeI	CTAG	2 cut(s)	156, 891
MaeIII	GTNAC	2 cut(s)	532, 572
MalI	GATC	6 cut(s)	94, 123, 143, 253, 681, 825
MboI	GATC	6 cut(s)	92, 121, 141, 251, 679, 823
MboII	GAAGA	6 cut(s)	136, 250, 332, 612, 1147, 1169
MflI	RGATCY	2 cut(s)	251, 823
MhlI	GDGCHC	1 cut(s)	692
MluCI	AATT	5 cut(s)	31, 868, 903, 1063, 1101
MlyI	GAGTC	6 cut(s)	217, 371, 462, 933, 993, 995
MmeI	TCCRAC	4 cut(s)	34, 307, 456, 989
MroI	TCCGGA	1 cut(s)	826
MseI	TTAA	2 cut(s)	459, 642
MslI	CAYNNNNRTG	2 cut(s)	77, 335
MspA1I	CMGCKG	1 cut(s)	579
MspI	CCGG	3 cut(s)	707, 722, 827
MspR9I	CCNGG	2 cut(s)	723, 991
MvaI	CCWGG	1 cut(s)	991
MwoI	GCNNNNNNNGC	2 cut(s)	857, 917
NciI	CCSGG	1 cut(s)	723
NcoI	CCATGG	2 cut(s)	72, 1047
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	6 cut(s)	92, 121, 141, 251, 679, 823
NlaIV	GGNNCC	2 cut(s)	705, 825
NmeAIII	GCCGAG	1 cut(s)	671
NmuCI	GTSAC	2 cut(s)	532, 572
NspI	RCATGY	2 cut(s)	769, 1098
NspV	TTCGAA	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	393
PagI	TCATGA	1 cut(s)	78
PciI	ACATGT	2 cut(s)	765, 1094
PfeI	GAWTC	2 cut(s)	221, 718
PfoI	TCCNGGA	1 cut(s)	721
PkrI	GCNGC	2 cut(s)	170, 973
PleI	GAGTC	6 cut(s)	216, 371, 461, 932, 993, 994
PpsI	GAGTC	6 cut(s)	216, 371, 461, 932, 993, 994
PscI	ACATGT	2 cut(s)	765, 1094
PshAI	GACNNNNGTC	2 cut(s)	74, 381
PshBI	ATTAAT	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	989
PspFI	CCCAGC	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	989
PspN4I	GGNNCC	2 cut(s)	705, 825
PspPI	GGNCC	3 cut(s)	183, 360, 1044
PstI	CTGCAG	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	251, 823
RsaI	GTAC	2 cut(s)	24, 197
RsaNI	GTAC	2 cut(s)	23, 196
RseI	CAYNNNNRTG	2 cut(s)	77, 335
SacI	GAGCTC	1 cut(s)	692
SalI	GTCGAC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	459, 642
SatI	GCNGC	2 cut(s)	169, 972
Sau3AI	GATC	6 cut(s)	92, 121, 141, 251, 679, 823
Sau96I	GGNCC	3 cut(s)	183, 360, 1044
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	6 cut(s)	217, 371, 462, 933, 993, 995
ScrFI	CCNGG	2 cut(s)	723, 991
SduI	GDGCHC	1 cut(s)	692
SfaNI	GCATC	2 cut(s)	180, 381
SfcI	CTRYAG	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	393
SfuI	TTCGAA	1 cut(s)	595
SinI	GGWCC	2 cut(s)	183, 1044
SlaI	CTCGAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	77, 335
SmlI	CTYRAG	3 cut(s)	56, 393, 1001
SmoI	CTYRAG	3 cut(s)	56, 393, 1001
Sse9I	AATT	5 cut(s)	31, 868, 903, 1063, 1101
SsiI	CCGC	5 cut(s)	341, 422, 522, 579, 851
SspMI	CTAG	2 cut(s)	156, 891
SstI	GAGCTC	1 cut(s)	692
StyD4I	CCNGG	2 cut(s)	721, 989
StyI	CCWWGG	6 cut(s)	72, 155, 267, 289, 508, 1047
TaaI	ACNGT	3 cut(s)	347, 647, 961
TaqI	TCGA	5 cut(s)	68, 375, 394, 595, 783
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	5 cut(s)	31, 868, 903, 1063, 1101
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	221, 718
Tru1I	TTAA	2 cut(s)	459, 642
Tru9I	TTAA	2 cut(s)	459, 642
TscAI	CASTG	1 cut(s)	964
TseFI	GTSAC	2 cut(s)	532, 572
TseI	GCWGC	2 cut(s)	168, 971
Tsp45I	GTSAC	2 cut(s)	532, 572
TspDTI	ATGAA	6 cut(s)	95, 234, 298, 422, 574, 1170
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	964
VpaK11BI	GGWCC	2 cut(s)	183, 1044
VspI	ATTAAT	1 cut(s)	459
XceI	RCATGY	2 cut(s)	769, 1098
XhoI	CTCGAG	1 cut(s)	393
XmaJI	CCTAGG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	68
XspI	CTAG	2 cut(s)	156, 891
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.