Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Reverse (-)

6687454 .. 6688317

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAATTGGCTCGCGGAGATACCTAGGGTTGCGGAGATGATTTGGGTAAAGTTGGAGAGCGATCCAACTCCATTAAAAGATGGAATCATACTGAAGATGATCTGTGGCTCTTTCTATTTGCCCAAAGAAAGTGAAAGTCGATCGGTTCTAGGTGAAGATGCTCACTTCATTTGTGCAGAAAAGAACACTATTGGTGTTGTGGATGGCGTTGGCGGGTGGGCTAAGTATGGCGTGGATGCAAGAGAGTATGCAAGGAAGCTCATGGAAAACTCAGTCATGGCTGTACGTAATCAACATAGAAAATCAGGAGATGTTGATGTTGATCCGATACGAGTCTTGCATGAAGCCTATGCAAACACCAAGAATATTGATGGCACGTCAACAGCTTGCATCGTAACGCTTGGCGACGAAGGTAAAACCTTGCATGCTGTGAATGTTGGAGATAGTGGTTTTATGATATTTAGAGAGAACAAGTATGTGTACATTTCGCCAATTCGACAGAGTTACTTTAACTGTCCTCTACAGTTGGGGAAAGGATCAGACGATAGTCCGCAATCGGCTACAGAGATTAAAGTTAGGGTACTTCGGCCGGGAGATGTCATAGTTCTTGCGACCGATGGGTTGCTTGACAATGTGTCGCCGGGAGAAATAGAAAAACTTTTGGAAGAGAATAATACTATAAACGGTTCTGTGGAACCGGAGATGTTGGCACGGATCATAGTAGAGAGGCTGGCTTTGCGTAACTCCGAGGATGCAAGAAGGTTGACACCTTTTGCAATTGCGGCTCATAAGGCCGGAGTCGACCACATTGGAGGCAAGATGGATGATATCACTGTTATTGTAGGTCAAATACTTGCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

288

Amino Acids

31.47

Weight (kDa)

5.26

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C_2	PF13672	84 - 212	6.5e-06	Protein phosphatase 2C
SpoIIE	PF07228	93 - 247	6.3e-07	Stage II sporulation protein E (SpoIIE)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	801
AccII	CGCG	1 cut(s)	14
AciI	CCGC	5 cut(s)	14, 32, 213, 551, 782
AclWI	GGATC	4 cut(s)	56, 317, 544, 722
AcoI	YGGCCR	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	3 cut(s)	285, 482, 582
AhdI	GACNNNNNGTC	1 cut(s)	634
AjiI	CACGTC	1 cut(s)	378
AluBI	AGCT	2 cut(s)	259, 386
AluI	AGCT	2 cut(s)	259, 386
AlwI	GGATC	4 cut(s)	56, 317, 544, 722
AoxI	GGCC	2 cut(s)	587, 792
AspA2I	CCTAGG	1 cut(s)	23
AsuC2I	CCSGG	2 cut(s)	591, 642
AsuHPI	GGTGA	1 cut(s)	164
AvrII	CCTAGG	1 cut(s)	23
BccI	CCATC	5 cut(s)	74, 197, 365, 611, 814
BcnI	CCSGG	2 cut(s)	591, 642
BfaI	CTAG	3 cut(s)	24, 149, 862
BfmI	CTRYAG	2 cut(s)	521, 561
BisI	GCNGC	1 cut(s)	783
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	2 cut(s)	591, 642
BmeRI	GACNNNNNGTC	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	2 cut(s)	591, 642
BmsI	GCATC	4 cut(s)	148, 226, 399, 742
BoxI	GACNNNNGTC	1 cut(s)	546
BpuMI	CCSGG	2 cut(s)	591, 642
BsaAI	YACGTR	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	23, 747
BsaWI	WCCGGW	1 cut(s)	697
Bse8I	GATNNNNATC	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	23, 747
BseGI	GGATG	4 cut(s)	208, 241, 757, 829
BseJI	GATNNNNATC	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	285
BseX3I	CGGCCG	1 cut(s)	587
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	3 cut(s)	143, 590, 615
BshFI	GGCC	2 cut(s)	589, 794
BsiEI	CGRYCG	3 cut(s)	143, 590, 615
BsiSI	CCGG	4 cut(s)	590, 641, 698, 795
BsnI	GGCC	2 cut(s)	589, 794
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	6 cut(s)	61, 99, 140, 322, 536, 714
BspACI	CCGC	5 cut(s)	14, 32, 213, 551, 782
BspANI	GGCC	2 cut(s)	589, 794
BspCNI	CTCAG	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	696
BspPI	GGATC	4 cut(s)	56, 317, 544, 722
BsrGI	TGTACA	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	23, 747
BssMI	GATC	6 cut(s)	61, 99, 140, 322, 536, 714
BssT1I	CCWWGG	1 cut(s)	23
Bst4CI	ACNGT	4 cut(s)	515, 525, 686, 835
Bst6I	CTCTTC	1 cut(s)	660
BstAUI	TGTACA	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	12, 388, 426, 732
BstDEI	CTNAG	2 cut(s)	222, 271
BstF5I	GGATG	4 cut(s)	208, 241, 757, 829
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	6 cut(s)	64, 102, 143, 325, 539, 717
BstMBI	GATC	6 cut(s)	61, 99, 140, 322, 536, 714
BstMCI	CGRYCG	3 cut(s)	143, 590, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	736, 782, 791
BstNSI	RCATGY	1 cut(s)	428
BstPAI	GACNNNNGTC	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	589, 640
BstSFI	CTRYAG	2 cut(s)	521, 561
BstSNI	TACGTA	1 cut(s)	287
BstUI	CGCG	1 cut(s)	14
BstZI	CGGCCG	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	589, 794
BtrI	CACGTC	1 cut(s)	378
BtsCI	GGATG	4 cut(s)	208, 241, 757, 829
BtsIMutI	CAGTG	1 cut(s)	831
Cac8I	GCNNGC	4 cut(s)	12, 388, 426, 732
Csp6I	GTAC	3 cut(s)	284, 481, 581
CviAII	CATG	4 cut(s)	262, 277, 341, 425
CviQI	GTAC	3 cut(s)	284, 481, 581
DdeI	CTNAG	2 cut(s)	222, 271
DpnI	GATC	6 cut(s)	63, 101, 142, 324, 538, 716
DpnII	GATC	6 cut(s)	61, 99, 140, 322, 536, 714
DriI	GACNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	587
EagI	CGGCCG	1 cut(s)	587
Eam1104I	CTCTTC	1 cut(s)	660
Eam1105I	GACNNNNNGTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	660
EclXI	CGGCCG	1 cut(s)	587
Eco105I	TACGTA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	829
Eco52I	CGGCCG	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	829
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	4 cut(s)	265, 280, 344, 428
FatI	CATG	4 cut(s)	261, 276, 340, 424
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	4 cut(s)	215, 248, 764, 836
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	3 cut(s)	24, 149, 862
GluI	GCNGC	1 cut(s)	783
HaeIII	GGCC	2 cut(s)	589, 794
HapII	CCGG	4 cut(s)	590, 641, 698, 795
Hin1II	CATG	4 cut(s)	265, 280, 344, 428
HincII	GTYRAC	3 cut(s)	381, 765, 802
HindII	GTYRAC	3 cut(s)	381, 765, 802
HinfI	GANTC	3 cut(s)	84, 333, 798
HpaII	CCGG	4 cut(s)	590, 641, 698, 795
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	4 cut(s)	381, 481, 765, 802
Hpy188I	TCNGA	3 cut(s)	327, 541, 748
Hpy188III	TCNNGA	1 cut(s)	306
Hpy8I	GTNNAC	4 cut(s)	381, 481, 765, 802
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	404, 753
HpyCH4III	ACNGT	4 cut(s)	515, 525, 686, 835
HpyCH4IV	ACGT	2 cut(s)	286, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	736, 782, 791
HpyF3I	CTNAG	2 cut(s)	222, 271
HpySE526I	ACGT	2 cut(s)	286, 377
Hsp92II	CATG	4 cut(s)	265, 280, 344, 428
Kzo9I	GATC	6 cut(s)	61, 99, 140, 322, 536, 714
LpnPI	CCDG	6 cut(s)	291, 603, 654, 711, 716, 808
LweI	GCATC	4 cut(s)	148, 226, 399, 742
MaeI	CTAG	3 cut(s)	24, 149, 862
MaeII	ACGT	2 cut(s)	286, 377
MaeIII	GTNAC	3 cut(s)	394, 503, 740
MalI	GATC	6 cut(s)	63, 101, 142, 324, 538, 716
MboI	GATC	6 cut(s)	61, 99, 140, 322, 536, 714
MboII	GAAGA	3 cut(s)	106, 167, 677
MfeI	CAATTG	1 cut(s)	777
MluCI	AATT	3 cut(s)	4, 492, 777
MlyI	GAGTC	2 cut(s)	342, 807
MmeI	TCCRAC	3 cut(s)	33, 89, 418
MnlI	CCTC	4 cut(s)	528, 720, 742, 806
MseI	TTAA	3 cut(s)	74, 510, 570
MspI	CCGG	4 cut(s)	590, 641, 698, 795
MspR9I	CCNGG	2 cut(s)	591, 642
MunI	CAATTG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	736, 782, 791
NciI	CCSGG	2 cut(s)	591, 642
NdeII	GATC	6 cut(s)	61, 99, 140, 322, 536, 714
NlaIII	CATG	4 cut(s)	265, 280, 344, 428
NlaIV	GGNNCC	1 cut(s)	696
NspI	RCATGY	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	784
Ple19I	CGATCG	1 cut(s)	143
PleI	GAGTC	2 cut(s)	341, 806
PpsI	GAGTC	2 cut(s)	341, 806
Ppu21I	YACGTR	1 cut(s)	287
PshAI	GACNNNNGTC	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	696
PvuI	CGATCG	1 cut(s)	143
RsaI	GTAC	3 cut(s)	285, 482, 582
RsaNI	GTAC	3 cut(s)	284, 481, 581
SalI	GTCGAC	1 cut(s)	800
SaqAI	TTAA	3 cut(s)	74, 510, 570
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	6 cut(s)	61, 99, 140, 322, 536, 714
SchI	GAGTC	2 cut(s)	342, 807
ScrFI	CCNGG	2 cut(s)	591, 642
SfaNI	GCATC	4 cut(s)	148, 226, 399, 742
SfcI	CTRYAG	2 cut(s)	521, 561
SnaBI	TACGTA	1 cut(s)	287
SphI	GCATGC	1 cut(s)	428
Sse9I	AATT	3 cut(s)	4, 492, 777
SsiI	CCGC	5 cut(s)	14, 32, 213, 551, 782
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	3 cut(s)	24, 149, 862
StyD4I	CCNGG	2 cut(s)	589, 640
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	4 cut(s)	515, 525, 686, 835
TaiI	ACGT	2 cut(s)	289, 380
TaqI	TCGA	3 cut(s)	139, 496, 801
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	3 cut(s)	4, 492, 777
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	74, 510, 570
Tru9I	TTAA	3 cut(s)	74, 510, 570
TscAI	CASTG	1 cut(s)	838
TspDTI	ATGAA	3 cut(s)	17, 157, 357
TspGWI	ACGGA	1 cut(s)	727
TspRI	CASTG	1 cut(s)	838
XceI	RCATGY	1 cut(s)	428
XmaJI	CCTAGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	801
XspI	CTAG	3 cut(s)	24, 149, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.