Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Reverse (-)

9679944 .. 9680980

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G166700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGATGATCGCCAACTACAATAACACAAATACTTGCTATGGTTATGGCTCTCAATATCAACAAATATTAACGGAACACGAGGAATTGAGAAGAAAAAGGAAGGTGAATAAGTCTGATCAAATTCAAGAATTACTATTTAAAAATAGGAGGAAGATTCATAATGAGAAGATGAAGCTGGTCTGTGGGTCTTGCTATCTTCCGAAAGACAACCCAGACAAGCCCCTCGGTGAAGACGCCCACTTCATCTGCCACAACGGCCAGACCATCGGTGTGGCAGACGGCGTCGGCGGCTGGGCCAAGATAGGAGTCGATGCGGGCGTGTACGCAAGGGGACTCATGAACAACGCCAACCAAACGGCCATGGACATGACCCGAGCCGCAGCAGCCGAGGTCAATCCAAGAAATGTGTTGAACCAAGCATACGCGAACAACGCTGGAGTACAAGGCTCGTCCACAGCTTGCATCCTCAGCCTCAACAAAGAGCGTGGGGCACTGCACGCCGTGAATGTCGGGGACAGCGGCTTCATGGTGTTCAGGGACAGCAGATGTTTGTACAAGTCTCCACCTCAGCAGCGCATGTTTAACTGTCCGTACCAGTTGGGGAACTACGTCGGCTACGACCGTCCCAAGGCGGCTCTAGAGTTTGTGATGGAGGCAGTCCCGGGAGACATCATAGTGCTTGGGACAGATGGGTTGTTGGACAACATGTTTCCGAGTGAGATTGAGGATGTTCTTGTGGCGTATAGAGGAAGCGGTCGGGATTGTAAGGAGTTGGCTTCCGCCATAGCCAACCTGGCGCTGTTTAACTCGTTGGACAAGTACAGCGTTAGCCCTTTTCAAATGGAGGCTCAGAAGGCTGGACTTGAGCACGCAGGAGGCAAGATCGACGACATCACTGTTGTTGTCGCCCAAGTTGTAGCTTCTAGCTCCTTCACTACACCAGCTAGCTTAGGTTTCGGATTTGAACGCACAGATACAAAAAGAAAAAGAGAAGACTATATTAGGTTTAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

339

Amino Acids

37.29

Weight (kDa)

8.04

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	425
AciI	CCGC	7 cut(s)	288, 314, 378, 519, 632, 753, 780
AcoI	YGGCCR	2 cut(s)	256, 357
AcsI	RAATTY	1 cut(s)	120
AcyI	GRCGYC	2 cut(s)	234, 282
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	5 cut(s)	323, 441, 554, 593, 821
AfiI	CCNNNNNNNGG	1 cut(s)	628
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	4 cut(s)	125, 412, 839, 965
AjnI	CCWGG	1 cut(s)	792
AluBI	AGCT	6 cut(s)	175, 458, 920, 927, 944, 948
AluI	AGCT	6 cut(s)	175, 458, 920, 927, 944, 948
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	564, 660
Ama87I	CYCGRG	2 cut(s)	372, 661
AoxI	GGCC	3 cut(s)	256, 294, 357
ApeKI	GCWGC	3 cut(s)	380, 383, 571
ApoI	RAATTY	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	576, 799
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	2 cut(s)	662, 663
AsuHPI	GGTGA	2 cut(s)	115, 239
AsuNHI	GCTAGC	1 cut(s)	944
AvaI	CYCGRG	2 cut(s)	372, 661
BaeGI	GKGCMC	1 cut(s)	493
BauI	CACGAG	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	237, 999
Bbv12I	GWGCWC	1 cut(s)	870
BbvCI	CCTCAGC	2 cut(s)	467, 567
BbvI	GCAGC	3 cut(s)	392, 395, 583
BccI	CCATC	3 cut(s)	272, 643, 683
BceAI	ACGGC	4 cut(s)	271, 295, 372, 485
BciT130I	CCWGG	1 cut(s)	794
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	662, 663
BcoDI	GTCTC	2 cut(s)	564, 660
BfaI	CTAG	3 cut(s)	638, 924, 945
BfoI	RGCGCY	1 cut(s)	800
BglI	GCCNNNNNGGC	2 cut(s)	255, 794
BisI	GCNGC	7 cut(s)	289, 378, 381, 384, 520, 572, 633
BlsI	GCNGC	7 cut(s)	290, 379, 382, 385, 521, 573, 634
Bme1390I	CCNGG	3 cut(s)	662, 663, 794
BmeT110I	CYCGRG	2 cut(s)	372, 661
BmgT120I	GGNCC	1 cut(s)	294
BmrFI	CCNGG	3 cut(s)	662, 663, 794
BmsI	GCATC	2 cut(s)	301, 471
BmtI	GCTAGC	1 cut(s)	948
BpiI	GAAGAC	2 cut(s)	237, 999
BpmI	CTGGAG	1 cut(s)	456
Bpu10I	CCTNAGC	3 cut(s)	467, 567, 949
BpuEI	CTTGAG	1 cut(s)	884
BpuMI	CCSGG	2 cut(s)	662, 663
BsaHI	GRCGYC	2 cut(s)	234, 282
BsaJI	CCNNGG	5 cut(s)	223, 360, 387, 627, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	794
BseDI	CCNNGG	5 cut(s)	223, 360, 387, 627, 661
BseGI	GGATG	2 cut(s)	462, 733
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	481, 581, 863
BseNI	ACTGG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	3 cut(s)	392, 395, 583
BseYI	CCCAGC	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	425
Bsh1285I	CGRYCG	2 cut(s)	622, 757
BshFI	GGCC	3 cut(s)	258, 296, 359
BsiEI	CGRYCG	2 cut(s)	622, 757
BsiHKAI	GWGCWC	1 cut(s)	870
BsiHKCI	CYCGRG	2 cut(s)	372, 661
BsiSI	CCGG	1 cut(s)	662
BslFI	GGGAC	6 cut(s)	345, 527, 551, 609, 644, 697
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	2 cut(s)	564, 660
BsmFI	GGGAC	6 cut(s)	345, 527, 551, 609, 644, 697
BsnI	GGCC	3 cut(s)	258, 296, 359
BsoBI	CYCGRG	2 cut(s)	372, 661
Bsp1286I	GDGCHC	2 cut(s)	493, 870
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	3 cut(s)	6, 115, 882
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	7 cut(s)	288, 314, 378, 519, 632, 753, 780
BspANI	GGCC	3 cut(s)	258, 296, 359
BspCNI	CTCAG	3 cut(s)	480, 580, 862
BspFNI	CGCG	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	336
BspOI	GCTAGC	1 cut(s)	948
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	5 cut(s)	223, 360, 387, 627, 661
BssMI	GATC	3 cut(s)	6, 115, 882
BssNI	GRCGYC	2 cut(s)	234, 282
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	360, 627
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	794
Bst4CI	ACNGT	3 cut(s)	587, 623, 898
BstACI	GRCGYC	2 cut(s)	234, 282
BstAUI	TGTACA	1 cut(s)	552
BstC8I	GCNNGC	5 cut(s)	316, 460, 498, 870, 946
BstDEI	CTNAG	4 cut(s)	467, 567, 849, 949
BstDSI	CCRYGG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	462, 733
BstFNI	CGCG	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	2 cut(s)	576, 799
BstKTI	GATC	3 cut(s)	9, 118, 885
BstMAI	GTCTC	2 cut(s)	564, 660
BstMBI	GATC	3 cut(s)	6, 115, 882
BstMCI	CGRYCG	2 cut(s)	622, 757
BstMWI	GCNNNNNNNGC	8 cut(s)	255, 288, 383, 431, 468, 497, 794, 854
BstNI	CCWGG	1 cut(s)	794
BstNSI	RCATGY	2 cut(s)	580, 709
BstSCI	CCNGG	3 cut(s)	660, 661, 792
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	3 cut(s)	392, 395, 583
BstV2I	GAAGAC	2 cut(s)	237, 999
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	258, 296, 359
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	462, 733
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	2 cut(s)	491, 894
Cac8I	GCNNGC	5 cut(s)	316, 460, 498, 870, 946
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	576, 799
Cfr13I	GGNCC	1 cut(s)	294
Cfr9I	CCCGGG	1 cut(s)	661
CseI	GACGC	2 cut(s)	242, 271
Csp6I	GTAC	5 cut(s)	322, 440, 553, 592, 820
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	6 cut(s)	337, 361, 367, 526, 577, 706
CviQI	GTAC	5 cut(s)	322, 440, 553, 592, 820
DdeI	CTNAG	4 cut(s)	467, 567, 849, 949
DpnI	GATC	3 cut(s)	8, 117, 884
DpnII	GATC	3 cut(s)	6, 115, 882
DraI	TTTAAA	1 cut(s)	139
DraIII	CACNNNGTG	1 cut(s)	502
EaeI	YGGCCR	2 cut(s)	256, 357
EciI	GGCGGA	1 cut(s)	769
Eco130I	CCWWGG	2 cut(s)	360, 627
Eco88I	CYCGRG	2 cut(s)	372, 661
EcoRII	CCWGG	1 cut(s)	792
EcoT14I	CCWWGG	2 cut(s)	360, 627
ErhI	CCWWGG	2 cut(s)	360, 627
FaeI	CATG	6 cut(s)	340, 364, 370, 529, 580, 709
FaqI	GGGAC	6 cut(s)	345, 527, 551, 609, 644, 697
FatI	CATG	6 cut(s)	336, 360, 366, 525, 576, 705
FauI	CCCGC	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	7 cut(s)	289, 378, 381, 384, 520, 572, 633
FokI	GGATG	2 cut(s)	449, 740
Fsp4HI	GCNGC	7 cut(s)	289, 378, 381, 384, 520, 572, 633
FspBI	CTAG	3 cut(s)	638, 924, 945
GlaI	GCGC	2 cut(s)	575, 798
GluI	GCNGC	7 cut(s)	289, 378, 381, 384, 520, 572, 633
GsaI	CCCAGC	1 cut(s)	295
GsuI	CTGGAG	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	800
HaeIII	GGCC	3 cut(s)	258, 296, 359
HapII	CCGG	1 cut(s)	662
HgaI	GACGC	2 cut(s)	242, 271
HhaI	GCGC	2 cut(s)	576, 799
Hin1I	GRCGYC	2 cut(s)	234, 282
Hin1II	CATG	6 cut(s)	340, 364, 370, 529, 580, 709
Hin6I	GCGC	2 cut(s)	574, 797
HinP1I	GCGC	2 cut(s)	574, 797
HinfI	GANTC	3 cut(s)	154, 306, 333
HpaII	CCGG	1 cut(s)	662
HphI	GGTGA	2 cut(s)	115, 239
Hpy166II	GTNNAC	2 cut(s)	322, 453
Hpy188I	TCNGA	5 cut(s)	115, 201, 714, 852, 959
Hpy188III	TCNNGA	4 cut(s)	125, 337, 638, 758
Hpy8I	GTNNAC	2 cut(s)	322, 453
Hpy99I	CGWCG	3 cut(s)	287, 614, 890
HpyAV	CCTTC	3 cut(s)	94, 847, 940
HpyCH4III	ACNGT	3 cut(s)	587, 623, 898
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	2 cut(s)	462, 496
HpyF10VI	GCNNNNNNNGC	8 cut(s)	255, 288, 383, 431, 468, 497, 794, 854
HpyF3I	CTNAG	4 cut(s)	467, 567, 849, 949
HpySE526I	ACGT	1 cut(s)	609
Hsp92I	GRCGYC	2 cut(s)	234, 282
Hsp92II	CATG	6 cut(s)	340, 364, 370, 529, 580, 709
HspAI	GCGC	2 cut(s)	574, 797
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	6, 115, 882
LmnI	GCTCC	1 cut(s)	932
Lsp1109I	GCAGC	3 cut(s)	392, 395, 583
LweI	GCATC	2 cut(s)	301, 471
MaeI	CTAG	3 cut(s)	638, 924, 945
MaeII	ACGT	1 cut(s)	609
MalI	GATC	3 cut(s)	8, 117, 884
MboI	GATC	3 cut(s)	6, 115, 882
MboII	GAAGA	6 cut(s)	102, 163, 178, 188, 242, 1004
MhlI	GDGCHC	2 cut(s)	493, 870
MluCI	AATT	4 cut(s)	83, 120, 128, 1012
MlyI	GAGTC	2 cut(s)	315, 327
MmeI	TCCRAC	2 cut(s)	678, 792
MseI	TTAA	4 cut(s)	68, 138, 582, 804
MslI	CAYNNNNRTG	3 cut(s)	269, 365, 674
MspA1I	CMGCKG	1 cut(s)	519
MspI	CCGG	1 cut(s)	662
MspR9I	CCNGG	3 cut(s)	662, 663, 794
MvaI	CCWGG	1 cut(s)	794
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	8 cut(s)	255, 288, 383, 431, 468, 497, 794, 854
NciI	CCSGG	2 cut(s)	662, 663
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	3 cut(s)	6, 115, 882
NheI	GCTAGC	1 cut(s)	944
NlaIII	CATG	6 cut(s)	340, 364, 370, 529, 580, 709
NmeAIII	GCCGAG	1 cut(s)	412
NspI	RCATGY	2 cut(s)	580, 709
PagI	TCATGA	1 cut(s)	336
PciI	ACATGT	1 cut(s)	705
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 615
PfeI	GAWTC	1 cut(s)	154
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	7 cut(s)	290, 379, 382, 385, 521, 573, 634
PleI	GAGTC	2 cut(s)	314, 327
PpsI	GAGTC	2 cut(s)	314, 327
PscI	ACATGT	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	792
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	792
PspPI	GGNCC	1 cut(s)	294
PsrI	GAACNNNNNNTAC	2 cut(s)	404, 436
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	5 cut(s)	323, 441, 554, 593, 821
RsaNI	GTAC	5 cut(s)	322, 440, 553, 592, 820
RseI	CAYNNNNRTG	3 cut(s)	269, 365, 674
SaqAI	TTAA	4 cut(s)	68, 138, 582, 804
SatI	GCNGC	7 cut(s)	289, 378, 381, 384, 520, 572, 633
Sau3AI	GATC	3 cut(s)	6, 115, 882
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	2 cut(s)	315, 327
ScrFI	CCNGG	3 cut(s)	662, 663, 794
SduI	GDGCHC	2 cut(s)	493, 870
SfaNI	GCATC	2 cut(s)	301, 471
SmaI	CCCGGG	1 cut(s)	663
SmiMI	CAYNNNNRTG	3 cut(s)	269, 365, 674
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	4 cut(s)	83, 120, 128, 1012
SsiI	CCGC	7 cut(s)	288, 314, 378, 519, 632, 753, 780
SspI	AATATT	1 cut(s)	66
SspMI	CTAG	3 cut(s)	638, 924, 945
StyD4I	CCNGG	3 cut(s)	660, 661, 792
StyI	CCWWGG	2 cut(s)	360, 627
TaaI	ACNGT	3 cut(s)	587, 623, 898
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	2 cut(s)	309, 885
TasI	AATT	4 cut(s)	83, 120, 128, 1012
TatI	WGTACW	3 cut(s)	439, 552, 819
TauI	GCSGC	4 cut(s)	291, 380, 522, 635
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	4 cut(s)	68, 138, 582, 804
Tru9I	TTAA	4 cut(s)	68, 138, 582, 804
TscAI	CASTG	2 cut(s)	498, 901
TseI	GCWGC	3 cut(s)	380, 383, 571
TspDTI	ATGAA	5 cut(s)	146, 185, 232, 353, 514
TspGWI	ACGGA	2 cut(s)	86, 579
TspMI	CCCGGG	1 cut(s)	661
TspRI	CASTG	2 cut(s)	498, 901
Tth111I	GACNNNGTC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	120
XbaI	TCTAGA	1 cut(s)	637
XceI	RCATGY	2 cut(s)	580, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmaI	CCCGGG	1 cut(s)	661
XspI	CTAG	3 cut(s)	638, 924, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.