Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Forward (+)

13509102 .. 13509779

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTTGAGGACATCAATCGCGTCGAATTAGGTAATAATGACCCTACTCGATCAAAAGAAAGAACCATTATGAAAATGGTTTGTGGGTCATTTTATTTGTCCAAGGAACGAAGAGACCCGCCGATAGAGGGCGACGATGCTCACTTCATTTGTACAGAAGAGAACATTATCGGTGTGGCGGATGGCGTGGGTCGTACTCGAAAGAATGGCATTGATTCCGGAGTTTATGCAAGGAAGCTCATGAACAATGCGGTCACGGCTGTACATAATCTACATAGAAGATCAGGAGATAGTAATGATGATCTGAAAGAGGTCTTGAATGAAGCTTATGCAAACACAAAGGATGTTGATGGGTCATCAACAGCTTGTATTGTTGGGCTTTTGCATGCTGTGAATGTTGGAGATAGTGGTTTCATGTCGTTTAGAAACAAGAAGTGCATCGATAAGTCTGAAATACAGGTACATCGTTTTAACTGTCCTGTTCAATGGGGGAGAAAAACAAAGGATGGTCCCCAATCAGCTGTGGAGATAAAACCAATTGAAGTTATCCCAGGAGATGTTATAGTTCTTGGGACAGATGGATTGCTTGACAATGTGTGGCCGGAAGAAATAGAGCAAGTTTTGGAGGAGAATACCATAGAAATTTTGTGGAACCGGAGCAGTTGGCGTGGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

226

Amino Acids

25.09

Weight (kDa)

5.22

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	3 cut(s)	119, 179, 251
AcoI	YGGCCR	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	642
AfaI	GTAC	4 cut(s)	154, 196, 264, 462
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	319, 485, 542
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	4 cut(s)	238, 326, 365, 521
AluI	AGCT	4 cut(s)	238, 326, 365, 521
Alw26I	GTCTC	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	1 cut(s)	599
ApoI	RAATTY	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	509
BccI	CCATC	4 cut(s)	176, 344, 500, 572
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	674
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	511, 653
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	127, 447
Bsa29I	ATCGAT	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	102, 550
BsaWI	WCCGGW	2 cut(s)	218, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	552
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	102, 550
BseGI	GGATG	3 cut(s)	187, 349, 511
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	601
BshVI	ATCGAT	1 cut(s)	441
BsiSI	CCGG	3 cut(s)	219, 602, 655
BslFI	GGGAC	2 cut(s)	495, 586
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	2 cut(s)	495, 586
BsnI	GGCC	1 cut(s)	601
Bso31I	GGTCTC	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	218
Bsp1407I	TGTACA	2 cut(s)	152, 262
Bsp143I	GATC	3 cut(s)	50, 281, 301
BspACI	CCGC	3 cut(s)	119, 179, 251
BspANI	GGCC	1 cut(s)	601
BspDI	ATCGAT	1 cut(s)	441
BspEI	TCCGGA	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	511, 653
BspTNI	GGTCTC	1 cut(s)	108
BsrGI	TGTACA	2 cut(s)	152, 262
BssECI	CCNNGG	2 cut(s)	102, 550
BssMI	GATC	3 cut(s)	50, 281, 301
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	2 cut(s)	106, 153
BstAUI	TGTACA	2 cut(s)	152, 262
BstC8I	GCNNGC	1 cut(s)	387
BstF5I	GGATG	3 cut(s)	187, 349, 511
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	3 cut(s)	53, 284, 304
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	50, 281, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	674
BstUI	CGCG	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	601
BsuTUI	ATCGAT	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	187, 349, 511
Cac8I	GCNNGC	1 cut(s)	387
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	4 cut(s)	153, 195, 263, 461
CviAII	CATG	3 cut(s)	241, 386, 415
CviJI	RGCY	7 cut(s)	238, 260, 326, 365, 379, 521, 601
CviKI_1	RGCY	7 cut(s)	238, 260, 326, 365, 379, 521, 601
CviQI	GTAC	4 cut(s)	153, 195, 263, 461
DpnI	GATC	3 cut(s)	52, 283, 303
DpnII	GATC	3 cut(s)	50, 281, 301
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	2 cut(s)	106, 153
EarI	CTCTTC	2 cut(s)	106, 153
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	3 cut(s)	244, 389, 418
FaqI	GGGAC	2 cut(s)	495, 586
FatI	CATG	3 cut(s)	240, 385, 414
FauI	CCCGC	1 cut(s)	126
FokI	GGATG	3 cut(s)	194, 356, 518
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	3 cut(s)	219, 602, 655
HgaI	GACGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	244, 389, 418
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	3 cut(s)	219, 602, 655
Hpy166II	GTNNAC	1 cut(s)	671
Hpy188I	TCNGA	2 cut(s)	306, 451
Hpy188III	TCNNGA	4 cut(s)	219, 241, 285, 316
Hpy8I	GTNNAC	1 cut(s)	671
Hpy99I	CGWCG	2 cut(s)	26, 137
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4V	TGCA	4 cut(s)	230, 332, 385, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	244, 389, 418
Kpn2I	TCCGGA	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	50, 281, 301
LmnI	GCTCC	1 cut(s)	657
LpnPI	CCDG	8 cut(s)	232, 270, 443, 492, 537, 564, 615, 668
LweI	GCATC	2 cut(s)	127, 447
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	52, 283, 303
MboI	GATC	3 cut(s)	50, 281, 301
MboII	GAAGA	4 cut(s)	123, 170, 291, 617
MfeI	CAATTG	1 cut(s)	537
MluCI	AATT	3 cut(s)	26, 537, 642
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	3 cut(s)	121, 304, 619
MroI	TCCGGA	1 cut(s)	218
MseI	TTAA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	3 cut(s)	219, 602, 655
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	3 cut(s)	50, 281, 301
NlaIII	CATG	3 cut(s)	244, 389, 418
NlaIV	GGNNCC	2 cut(s)	511, 653
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PagI	TCATGA	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	511, 653
PspPI	GGNCC	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	4 cut(s)	154, 196, 264, 462
RsaNI	GTAC	4 cut(s)	153, 195, 263, 461
SaqAI	TTAA	1 cut(s)	471
Sau3AI	GATC	3 cut(s)	50, 281, 301
Sau96I	GGNCC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	552
SetI	ASST	7 cut(s)	34, 240, 315, 328, 367, 462, 523
SfaNI	GCATC	2 cut(s)	127, 447
SfcI	CTRYAG	1 cut(s)	674
SinI	GGWCC	1 cut(s)	509
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	3 cut(s)	26, 537, 642
SsiI	CCGC	3 cut(s)	119, 179, 251
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	476
TaqI	TCGA	4 cut(s)	24, 49, 199, 441
TasI	AATT	3 cut(s)	26, 537, 642
TatI	WGTACW	2 cut(s)	152, 262
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	86, 136, 257, 336, 403
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	1 cut(s)	642
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.