Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042595.1

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Reverse (-)

1391 .. 2281

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgaattggctctcgaagatacctagggttatgaattggctctcgaagatacctagggttgccgaaatcatttgggtaaacctagagagcgacccaactccattaaaagaaggaaccacacagaagatggtctgtgggtctttttatttgcccaaagaaagtgaaaatcgatcgctactaggcgaagacgctcacttcatttgtgcaaaagagaacaccattggtgttgcggatggtgttggcgggtgggctaagtatggcgtagatgctggagagtatgcaaggaagctcatggacaactcagtcatggctgtacataaccaacatagaaaatctggagatgttgatgtcgatccgatacaaatcttgcatgaagcctacggaaacaccaagaatattgctgggacatcaacagcttgcattgtcacgcttagtaacgaaggtagaaccttgcatgctgtgaatgttggggatagtggtttcatgctgtttagagacaagaagtgtgtgtacatttcgccaattcgacagagttactttaactgtcctcttcaattggggacaggatcaggatatactccccagtcggctactgagattaaagttagggtacttcggccgggagatgtcatagttcttgggacagatgggttactggacaatgtgtcgccgggagaaatagagaaagttctggaggagaataccatagaaggttttgtggaaccggagatgttggcatggatcatagcagagaggctggctttacgcaactccgaggatgcaggaaggttgactcctttttcaattgcagctcataaggccggagtcgagcacattggaggtaagagggatgatatcacggtcattgtgggtcaaatacttgcagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

296

Amino Acids

32.32

Weight (kDa)

5.56

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AciI	CCGC	2 cut(s)	230, 243
AclWI	GGATC	3 cut(s)	347, 574, 749
AcoI	YGGCCR	1 cut(s)	617
AfaI	GTAC	3 cut(s)	315, 512, 612
AgsI	TTSAA	2 cut(s)	554, 804
AhdI	GACNNNNNGTC	1 cut(s)	664
AluBI	AGCT	3 cut(s)	289, 416, 812
AluI	AGCT	3 cut(s)	289, 416, 812
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	347, 574, 749
AoxI	GGCC	2 cut(s)	617, 819
ApeKI	GCWGC	2 cut(s)	809, 884
AspA2I	CCTAGG	2 cut(s)	23, 53
AsuC2I	CCSGG	2 cut(s)	621, 672
AvrII	CCTAGG	2 cut(s)	23, 53
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	1 cut(s)	821
BccI	CCATC	3 cut(s)	121, 227, 641
BcnI	CCSGG	2 cut(s)	621, 672
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	4 cut(s)	24, 54, 83, 179
BisI	GCNGC	2 cut(s)	810, 885
BlnI	CCTAGG	2 cut(s)	23, 53
BlsI	GCNGC	2 cut(s)	811, 886
Bme1390I	CCNGG	2 cut(s)	621, 672
BmeRI	GACNNNNNGTC	1 cut(s)	664
BmiI	GGNNCC	2 cut(s)	115, 723
BmrFI	CCNGG	2 cut(s)	621, 672
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	2 cut(s)	256, 769
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	3 cut(s)	291, 357, 713
BpuMI	CCSGG	2 cut(s)	621, 672
Bsa29I	ATCGAT	1 cut(s)	169
BsaBI	GATNNNNATC	2 cut(s)	351, 362
BsaJI	CCNNGG	3 cut(s)	23, 53, 774
BsaWI	WCCGGW	1 cut(s)	724
Bse1I	ACTGG	2 cut(s)	583, 660
Bse8I	GATNNNNATC	2 cut(s)	351, 362
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	23, 53, 774
BseGI	GGATG	3 cut(s)	238, 784, 856
BseJI	GATNNNNATC	2 cut(s)	351, 362
BseMII	CTCAG	2 cut(s)	315, 585
BseNI	ACTGG	2 cut(s)	583, 660
BseRI	GAGGAG	1 cut(s)	710
BseX3I	CGGCCG	1 cut(s)	617
BseXI	GCAGC	1 cut(s)	821
BseYI	CCCAGC	1 cut(s)	401
Bsh1285I	CGRYCG	2 cut(s)	173, 620
BshFI	GGCC	2 cut(s)	619, 821
BshVI	ATCGAT	1 cut(s)	169
BsiEI	CGRYCG	2 cut(s)	173, 620
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	4 cut(s)	620, 671, 725, 822
BslFI	GGGAC	3 cut(s)	418, 574, 655
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	3 cut(s)	418, 574, 655
BsnI	GGCC	2 cut(s)	619, 821
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp1407I	TGTACA	2 cut(s)	313, 510
Bsp143I	GATC	4 cut(s)	170, 352, 566, 741
BspACI	CCGC	2 cut(s)	230, 243
BspANI	GGCC	2 cut(s)	619, 821
BspCNI	CTCAG	2 cut(s)	314, 586
BspDI	ATCGAT	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	115, 723
BspPI	GGATC	3 cut(s)	347, 574, 749
BsrGI	TGTACA	2 cut(s)	313, 510
BsrI	ACTGG	2 cut(s)	583, 660
BssECI	CCNNGG	3 cut(s)	23, 53, 774
BssMI	GATC	4 cut(s)	170, 352, 566, 741
BssT1I	CCWWGG	2 cut(s)	23, 53
Bst4CI	ACNGT	2 cut(s)	545, 862
Bst6I	CTCTTC	1 cut(s)	555
BstAUI	TGTACA	2 cut(s)	313, 510
BstC8I	GCNNGC	3 cut(s)	418, 456, 759
BstDEI	CTNAG	4 cut(s)	252, 301, 431, 594
BstF5I	GGATG	3 cut(s)	238, 784, 856
BstKTI	GATC	4 cut(s)	173, 355, 569, 744
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	4 cut(s)	170, 352, 566, 741
BstMCI	CGRYCG	2 cut(s)	173, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	818
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	2 cut(s)	619, 670
BstV1I	GCAGC	1 cut(s)	821
BstV2I	GAAGAC	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	617
Bsu15I	ATCGAT	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	619, 821
BsuTUI	ATCGAT	1 cut(s)	169
BtsCI	GGATG	3 cut(s)	238, 784, 856
Cac8I	GCNNGC	3 cut(s)	418, 456, 759
ClaI	ATCGAT	1 cut(s)	169
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	314, 511, 611
CviAII	CATG	6 cut(s)	292, 307, 371, 455, 484, 738
CviQI	GTAC	3 cut(s)	314, 511, 611
DdeI	CTNAG	4 cut(s)	252, 301, 431, 594
DpnI	GATC	4 cut(s)	172, 354, 568, 743
DpnII	GATC	4 cut(s)	170, 352, 566, 741
DrdI	GACNNNNNNGTC	1 cut(s)	302
DriI	GACNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	617
EagI	CGGCCG	1 cut(s)	617
Eam1104I	CTCTTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	555
EclXI	CGGCCG	1 cut(s)	617
Eco130I	CCWWGG	2 cut(s)	23, 53
Eco32I	GATATC	1 cut(s)	856
Eco52I	CGGCCG	1 cut(s)	617
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	23, 53
ErhI	CCWWGG	2 cut(s)	23, 53
FaeI	CATG	6 cut(s)	295, 310, 374, 458, 487, 741
FaqI	GGGAC	3 cut(s)	418, 574, 655
FatI	CATG	6 cut(s)	291, 306, 370, 454, 483, 737
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	810, 885
FokI	GGATG	3 cut(s)	245, 791, 863
Fsp4HI	GCNGC	2 cut(s)	810, 885
FspBI	CTAG	4 cut(s)	24, 54, 83, 179
GluI	GCNGC	2 cut(s)	810, 885
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	3 cut(s)	291, 357, 713
HaeIII	GGCC	2 cut(s)	619, 821
HapII	CCGG	4 cut(s)	620, 671, 725, 822
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	295, 310, 374, 458, 487, 741
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HinfI	GANTC	2 cut(s)	793, 825
HpaII	CCGG	4 cut(s)	620, 671, 725, 822
Hpy166II	GTNNAC	3 cut(s)	79, 511, 792
Hpy188I	TCNGA	2 cut(s)	357, 775
Hpy188III	TCNNGA	5 cut(s)	13, 43, 336, 570, 692
Hpy8I	GTNNAC	3 cut(s)	79, 511, 792
HpyAV	CCTTC	4 cut(s)	104, 434, 704, 780
HpyCH4III	ACNGT	2 cut(s)	545, 862
HpyCH4V	TGCA	8 cut(s)	206, 281, 370, 420, 454, 782, 809, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	818
HpyF3I	CTNAG	4 cut(s)	252, 301, 431, 594
Hsp92II	CATG	6 cut(s)	295, 310, 374, 458, 487, 741
Kzo9I	GATC	4 cut(s)	170, 352, 566, 741
Lsp1109I	GCAGC	1 cut(s)	821
LweI	GCATC	2 cut(s)	256, 769
MaeI	CTAG	4 cut(s)	24, 54, 83, 179
MaeIII	GTNAC	4 cut(s)	424, 434, 533, 651
MalI	GATC	4 cut(s)	172, 354, 568, 743
MboI	GATC	4 cut(s)	170, 352, 566, 741
MboII	GAAGA	5 cut(s)	28, 58, 136, 197, 542
MfeI	CAATTG	2 cut(s)	554, 804
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	5 cut(s)	4, 34, 522, 554, 804
MlyI	GAGTC	2 cut(s)	787, 834
MnlI	CCTC	6 cut(s)	558, 688, 747, 769, 833, 840
MseI	TTAA	3 cut(s)	104, 540, 600
MspI	CCGG	4 cut(s)	620, 671, 725, 822
MspR9I	CCNGG	2 cut(s)	621, 672
MunI	CAATTG	2 cut(s)	554, 804
MwoI	GCNNNNNNNGC	1 cut(s)	818
NciI	CCSGG	2 cut(s)	621, 672
NdeII	GATC	4 cut(s)	170, 352, 566, 741
NlaIII	CATG	6 cut(s)	295, 310, 374, 458, 487, 741
NlaIV	GGNNCC	2 cut(s)	115, 723
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	811, 886
Ple19I	CGATCG	1 cut(s)	173
PleI	GAGTC	2 cut(s)	787, 833
PpsI	GAGTC	2 cut(s)	787, 833
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	115, 723
PvuI	CGATCG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	315, 512, 612
RsaNI	GTAC	3 cut(s)	314, 511, 611
SaqAI	TTAA	3 cut(s)	104, 540, 600
SatI	GCNGC	2 cut(s)	810, 885
Sau3AI	GATC	4 cut(s)	170, 352, 566, 741
SchI	GAGTC	2 cut(s)	787, 834
ScrFI	CCNGG	2 cut(s)	621, 672
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	2 cut(s)	256, 769
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	5 cut(s)	4, 34, 522, 554, 804
SsiI	CCGC	2 cut(s)	230, 243
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	4 cut(s)	24, 54, 83, 179
StyD4I	CCNGG	2 cut(s)	619, 670
StyI	CCWWGG	2 cut(s)	23, 53
TaaI	ACNGT	2 cut(s)	545, 862
TaqI	TCGA	6 cut(s)	14, 44, 169, 351, 526, 828
TasI	AATT	5 cut(s)	4, 34, 522, 554, 804
TatI	WGTACW	2 cut(s)	313, 510
Tru1I	TTAA	3 cut(s)	104, 540, 600
Tru9I	TTAA	3 cut(s)	104, 540, 600
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	809, 884
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	5 cut(s)	17, 47, 187, 387, 472
TspGWI	ACGGA	1 cut(s)	396
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmaJI	CCTAGG	2 cut(s)	23, 53
XspI	CTAG	4 cut(s)	24, 54, 83, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.