Rroxscaffold_1G00059460

Protein phosphatase 2C 55

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004533
Physical Location & Seq
Forward (+)
81455594 .. 81457387
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059460.1

Sequence Viewer

Length: 918 bp
ATGAATTGGCTCTCGAAGATACCTAGGGTTATGAATTGGCTCTCGAAGATACCTAGGGTTGCCGAAATCATTTGGGTACAGCTAGAGAGTGATCCAACTCCATTAAAAGAAGGAACCATACTGAAGATGGTCTGTGGGTCTTTTTATTTGCCCAAAGAAAGTAAAAATCGATCACTTCTAGGCGAAGACGCTCACTTCATTTGTGCAGAAGAGAACACTATTGGTGTAGCAGATGGTGTTGGCGGGTGGGCTAAGTATGGCGTGGATGCTGGAGAGTATGCAAGGAAGCTCATGGACAACTCAGTCATGGCTGTACATAACCAACATAGAAAATCTGGAGATGTTGATGTCGATCCGATACAAATCTTGCATGAAGCCTACGGAAACACCAAGGATATTGCTGGGACATCAACAGCTTGCATCGTCACGCTTAGTGACGAAGGTAGAACCTTGCATGCTGTGAATGTTGGGGATAGTGGTTTCATGCTGTTTAGAGACAAGAAGTGTGTGTACATTTCGCCAATTCGACAGGGTTATTTTAACTGCCCTCTTCAATTGGGGACAGGGTCAGGAAATACTCCCCAATCAGCTACCGAGATTAAAGTTAAGGTACTTCGGCCGGGAGATGTCATAGTTCTTGGGACAGATGGGTTACTGGACAATGTGTCGCCGGGAGAAATAGAGAAAGTTCTGGAGGAGAATACCATAGAAGCAGGTTTTGTGGAACCGGAGATGTTGGCATGGATCATAGCAGAGAGGCTGGCTTTACGCAACTCCGAGGATGCAGGAAGGTTGACTCCTTTTTCAATTGCGGCTCATAAGGCCGGAGTCGAGCACATTGGAGATGTTTGCCTTTTCTTCACCGCGTTTTACATCTCCGGTCACATCATGGCTTGTTATGATCCGGATAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoIIE

Protein Analysis

305

Amino Acids

33.4

Weight (kDa)

5.23

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SpoIIE PF07228 111 - 227 1.5e-06 Stage II sporulation protein E (SpoIIE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 704
AccII CGCG 1 cut(s) 866
AccIII TCCGGA 1 cut(s) 904
AciI CCGC 3 cut(s) 243, 812, 864
AclWI GGATC 4 cut(s) 86, 347, 752, 896
AcoI YGGCCR 1 cut(s) 617
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 4 cut(s) 78, 315, 512, 612
AgsI TTSAA 2 cut(s) 554, 807
AhdI GACNNNNNGTC 1 cut(s) 664
AluBI AGCT 4 cut(s) 82, 289, 416, 590
AluI AGCT 4 cut(s) 82, 289, 416, 590
Alw21I GWGCWC 1 cut(s) 837
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 4 cut(s) 86, 347, 752, 896
Aor13HI TCCGGA 1 cut(s) 904
AoxI GGCC 2 cut(s) 617, 822
AspA2I CCTAGG 2 cut(s) 23, 53
AsuC2I CCSGG 2 cut(s) 621, 672
AsuHPI GGTGA 1 cut(s) 853
AvrII CCTAGG 2 cut(s) 23, 53
BarI GAAGNNNNNNTAC 4 cut(s) 102, 134, 494, 526
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 837
BccI CCATC 3 cut(s) 121, 227, 641
BcnI CCSGG 2 cut(s) 621, 672
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 4 cut(s) 24, 54, 83, 179
BfuAI ACCTGC 1 cut(s) 704
BisI GCNGC 1 cut(s) 813
BlnI CCTAGG 2 cut(s) 23, 53
BlsI GCNGC 1 cut(s) 814
Bme1390I CCNGG 2 cut(s) 621, 672
BmeRI GACNNNNNGTC 1 cut(s) 664
BmiI GGNNCC 2 cut(s) 115, 726
BmrFI CCNGG 2 cut(s) 621, 672
BmsI GCATC 3 cut(s) 256, 429, 772
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 3 cut(s) 291, 357, 713
BpuMI CCSGG 2 cut(s) 621, 672
Bsa29I ATCGAT 1 cut(s) 169
BsaBI GATNNNNATC 2 cut(s) 351, 362
BsaJI CCNNGG 4 cut(s) 23, 53, 390, 777
BsaWI WCCGGW 3 cut(s) 727, 878, 904
Bse1I ACTGG 1 cut(s) 660
Bse8I GATNNNNATC 2 cut(s) 351, 362
BseAI TCCGGA 1 cut(s) 904
BseCI ATCGAT 1 cut(s) 169
BseDI CCNNGG 4 cut(s) 23, 53, 390, 777
BseGI GGATG 2 cut(s) 271, 787
BseJI GATNNNNATC 2 cut(s) 351, 362
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 660
BseRI GAGGAG 1 cut(s) 710
BseX3I CGGCCG 1 cut(s) 617
BseYI CCCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 866
Bsh1285I CGRYCG 1 cut(s) 620
BshFI GGCC 2 cut(s) 619, 824
BshVI ATCGAT 1 cut(s) 169
BsiEI CGRYCG 1 cut(s) 620
BsiHKAI GWGCWC 1 cut(s) 837
BsiSI CCGG 6 cut(s) 620, 671, 728, 825, 879, 905
BslFI GGGAC 3 cut(s) 418, 574, 655
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 3 cut(s) 418, 574, 655
BsnI GGCC 2 cut(s) 619, 824
Bsp1286I GDGCHC 1 cut(s) 837
Bsp13I TCCGGA 1 cut(s) 904
Bsp1407I TGTACA 2 cut(s) 313, 510
Bsp143I GATC 5 cut(s) 91, 170, 352, 744, 901
BspACI CCGC 3 cut(s) 243, 812, 864
BspANI GGCC 2 cut(s) 619, 824
BspCNI CTCAG 1 cut(s) 314
BspDI ATCGAT 1 cut(s) 169
BspEI TCCGGA 1 cut(s) 904
BspFNI CGCG 1 cut(s) 866
BspLI GGNNCC 2 cut(s) 115, 726
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 4 cut(s) 86, 347, 752, 896
BsrGI TGTACA 2 cut(s) 313, 510
BsrI ACTGG 1 cut(s) 660
BssECI CCNNGG 4 cut(s) 23, 53, 390, 777
BssMI GATC 5 cut(s) 91, 170, 352, 744, 901
BssT1I CCWWGG 3 cut(s) 23, 53, 390
Bst6I CTCTTC 2 cut(s) 204, 555
BstAUI TGTACA 2 cut(s) 313, 510
BstC8I GCNNGC 3 cut(s) 418, 456, 762
BstDEI CTNAG 3 cut(s) 252, 301, 431
BstF5I GGATG 2 cut(s) 271, 787
BstFNI CGCG 1 cut(s) 866
BstKTI GATC 5 cut(s) 94, 173, 355, 747, 904
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 5 cut(s) 91, 170, 352, 744, 901
BstMCI CGRYCG 1 cut(s) 620
BstMWI GCNNNNNNNGC 1 cut(s) 821
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 619, 670
BstUI CGCG 1 cut(s) 866
BstV2I GAAGAC 1 cut(s) 192
BstZI CGGCCG 1 cut(s) 617
Bsu15I ATCGAT 1 cut(s) 169
BsuRI GGCC 2 cut(s) 619, 824
BsuTUI ATCGAT 1 cut(s) 169
BtsCI GGATG 2 cut(s) 271, 787
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 3 cut(s) 418, 456, 762
ClaI ATCGAT 1 cut(s) 169
CseI GACGC 1 cut(s) 197
Csp6I GTAC 4 cut(s) 77, 314, 511, 611
CviAII CATG 7 cut(s) 292, 307, 371, 455, 484, 741, 889
CviQI GTAC 4 cut(s) 77, 314, 511, 611
DdeI CTNAG 3 cut(s) 252, 301, 431
DpnI GATC 5 cut(s) 93, 172, 354, 746, 903
DpnII GATC 5 cut(s) 91, 170, 352, 744, 901
DrdI GACNNNNNNGTC 1 cut(s) 302
DriI GACNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 617
EagI CGGCCG 1 cut(s) 617
Eam1104I CTCTTC 2 cut(s) 204, 555
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 2 cut(s) 204, 555
EclXI CGGCCG 1 cut(s) 617
Eco130I CCWWGG 3 cut(s) 23, 53, 390
Eco52I CGGCCG 1 cut(s) 617
Eco57I CTGAAG 1 cut(s) 143
EcoT14I CCWWGG 3 cut(s) 23, 53, 390
ErhI CCWWGG 3 cut(s) 23, 53, 390
FaeI CATG 7 cut(s) 295, 310, 374, 458, 487, 744, 892
FaqI GGGAC 3 cut(s) 418, 574, 655
FatI CATG 7 cut(s) 291, 306, 370, 454, 483, 740, 888
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 813
FokI GGATG 2 cut(s) 278, 794
Fsp4HI GCNGC 1 cut(s) 813
FspBI CTAG 4 cut(s) 24, 54, 83, 179
GluI GCNGC 1 cut(s) 813
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 3 cut(s) 291, 357, 713
HaeIII GGCC 2 cut(s) 619, 824
HapII CCGG 6 cut(s) 620, 671, 728, 825, 879, 905
HgaI GACGC 1 cut(s) 197
Hin1II CATG 7 cut(s) 295, 310, 374, 458, 487, 744, 892
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HinfI GANTC 2 cut(s) 796, 828
HpaII CCGG 6 cut(s) 620, 671, 728, 825, 879, 905
HphI GGTGA 1 cut(s) 853
Hpy166II GTNNAC 2 cut(s) 511, 795
Hpy188I TCNGA 3 cut(s) 357, 778, 917
Hpy188III TCNNGA 6 cut(s) 13, 43, 336, 570, 692, 905
Hpy8I GTNNAC 2 cut(s) 511, 795
HpyAV CCTTC 3 cut(s) 104, 434, 783
HpyCH4V TGCA 6 cut(s) 206, 281, 370, 420, 454, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 821
HpyF3I CTNAG 3 cut(s) 252, 301, 431
Hsp92II CATG 7 cut(s) 295, 310, 374, 458, 487, 744, 892
Kpn2I TCCGGA 1 cut(s) 904
Kzo9I GATC 5 cut(s) 91, 170, 352, 744, 901
LweI GCATC 3 cut(s) 256, 429, 772
MaeI CTAG 4 cut(s) 24, 54, 83, 179
MaeIII GTNAC 4 cut(s) 424, 434, 651, 881
MalI GATC 5 cut(s) 93, 172, 354, 746, 903
MboI GATC 5 cut(s) 91, 170, 352, 744, 901
MboII GAAGA 7 cut(s) 28, 58, 136, 197, 221, 542, 850
MfeI CAATTG 2 cut(s) 554, 807
MhlI GDGCHC 1 cut(s) 837
MluCI AATT 5 cut(s) 4, 34, 522, 554, 807
MlyI GAGTC 2 cut(s) 790, 837
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 4 cut(s) 558, 688, 750, 772
MroI TCCGGA 1 cut(s) 904
MseI TTAA 4 cut(s) 104, 540, 600, 606
MspI CCGG 6 cut(s) 620, 671, 728, 825, 879, 905
MspR9I CCNGG 2 cut(s) 621, 672
MunI CAATTG 2 cut(s) 554, 807
MvnI CGCG 1 cut(s) 866
MwoI GCNNNNNNNGC 1 cut(s) 821
NciI CCSGG 2 cut(s) 621, 672
NdeII GATC 5 cut(s) 91, 170, 352, 744, 901
NlaIII CATG 7 cut(s) 295, 310, 374, 458, 487, 744, 892
NlaIV GGNNCC 2 cut(s) 115, 726
NmuCI GTSAC 3 cut(s) 424, 434, 881
NspI RCATGY 1 cut(s) 458
PaeI GCATGC 1 cut(s) 458
PflFI GACNNNGTC 1 cut(s) 565
PkrI GCNGC 1 cut(s) 814
PleI GAGTC 2 cut(s) 790, 836
PpsI GAGTC 2 cut(s) 790, 836
PspFI CCCAGC 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 115, 726
PsyI GACNNNGTC 1 cut(s) 565
RsaI GTAC 4 cut(s) 78, 315, 512, 612
RsaNI GTAC 4 cut(s) 77, 314, 511, 611
SaqAI TTAA 4 cut(s) 104, 540, 600, 606
SatI GCNGC 1 cut(s) 813
Sau3AI GATC 5 cut(s) 91, 170, 352, 744, 901
SchI GAGTC 2 cut(s) 790, 837
ScrFI CCNGG 2 cut(s) 621, 672
SduI GDGCHC 1 cut(s) 837
SfaNI GCATC 3 cut(s) 256, 429, 772
SphI GCATGC 1 cut(s) 458
Sse9I AATT 5 cut(s) 4, 34, 522, 554, 807
SsiI CCGC 3 cut(s) 243, 812, 864
SspMI CTAG 4 cut(s) 24, 54, 83, 179
StyD4I CCNGG 2 cut(s) 619, 670
StyI CCWWGG 3 cut(s) 23, 53, 390
TaqI TCGA 6 cut(s) 14, 44, 169, 351, 526, 831
TasI AATT 5 cut(s) 4, 34, 522, 554, 807
TatI WGTACW 2 cut(s) 313, 510
TauI GCSGC 1 cut(s) 815
Tru1I TTAA 4 cut(s) 104, 540, 600, 606
Tru9I TTAA 4 cut(s) 104, 540, 600, 606
TseFI GTSAC 3 cut(s) 424, 434, 881
Tsp45I GTSAC 3 cut(s) 424, 434, 881
TspDTI ATGAA 5 cut(s) 17, 47, 187, 387, 472
TspGWI ACGGA 1 cut(s) 396
Tth111I GACNNNGTC 1 cut(s) 565
XceI RCATGY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmaJI CCTAGG 2 cut(s) 23, 53
XspI CTAG 4 cut(s) 24, 54, 83, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.