Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Forward (+)

9695857 .. 9696699

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G167000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAGGATGATTTGTGGGTCCTACTATTGGCCCAAAGAAGACAAACTGAAGCCAGAAGGCGATGACGCCCATTTCATATGTGCACAAGAGCAGACTATTGGTGTGGCAGATGGCGTTGGTGGTTGGGCAAAGCATGGTGTAGATGCTGGCCAGTACGCAAGAGAACTCACGTGCAACTCGATCATGTCGGTCCAAAAACAGACCATTGTTGACCCAAGAAGGGTTTTGAACGAAGCTTATGCAGACACCAAGTGTGAAGGGTCCTCAACCGCTTGCATCGTCACGCTTAGAGAAACAGGAGTTTTGCACTTTGTCAACGTTGGGGATAGTGGTTTGATGGTGTTTAGAAACTACAAACTCTTGTACATGTCTCCTCGTGAACAGCGTAGTTTTAACTGTCCGTATCAACTGGGCAACAGCAGGGGCAGTGATAATCCTTGTAGCGCAACAGAAATCGAAATTAGAGTATTTCCAGGGGATATTGTAGTGCTTGGGACTGATGGATTGTGGGACAACATGTACCCGAATGAGATAGAGCAAGTTGTTCTGGGAAACATGAGAGAAAGTCGTGTGATGAAGCCGCAGGCGTTGGCTTGTCTTTTGGCAGATTTGGCTTGGCTTAGGTCTCTGGACAAGGACAGCTTTAGTCCTTATTCAAAAGCGGCTCAGGATGCTGGAAAGAATCATCCAGGAGGCAAGATGGACGACATTACTGTTGTAGTAGGTCATATTATGGTGACTTCTCCGGTCTGCTCTTGTGTTGAGGATTTCGTGGATAGACCTCTTGAAATCATATGGGATAACACAAAACCAGTGGAGCGGGCGACCTCCACTCCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

281

Amino Acids

31.08

Weight (kDa)

5.11

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	837
AccBSI	CCGCTC	1 cut(s)	820
AciI	CCGC	4 cut(s)	270, 581, 662, 820
AclI	AACGTT	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	68
AcvI	CACGTG	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	3 cut(s)	155, 365, 521
AfiI	CCNNNNNNNGG	3 cut(s)	27, 220, 837
AflIII	ACRYGT	2 cut(s)	366, 516
AgsI	TTSAA	3 cut(s)	229, 657, 788
AjnI	CCWGG	3 cut(s)	472, 688, 836
AluBI	AGCT	2 cut(s)	236, 642
AluI	AGCT	2 cut(s)	236, 642
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	375, 630
Alw44I	GTGCAC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	29, 148
ApaLI	GTGCAC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	4 cut(s)	18, 30, 190, 261
AsuHPI	GGTGA	1 cut(s)	748
AvaII	GGWCC	3 cut(s)	18, 190, 261
BaeGI	GKGCMC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	150
BauI	CACGAG	1 cut(s)	375
BbrPI	CACGTG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	85
BccI	CCATC	4 cut(s)	104, 331, 494, 694
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	3 cut(s)	474, 690, 838
BcoDI	GTCTC	2 cut(s)	375, 630
BisI	GCNGC	2 cut(s)	581, 663
BlsI	GCNGC	2 cut(s)	582, 664
Bme1390I	CCNGG	3 cut(s)	474, 690, 838
Bme18I	GGWCC	3 cut(s)	18, 190, 261
BmgT120I	GGNCC	4 cut(s)	18, 30, 190, 261
BmiI	GGNNCC	2 cut(s)	19, 262
BmrFI	CCNGG	3 cut(s)	474, 690, 838
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	3 cut(s)	133, 285, 661
BmuI	ACTGGG	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	45
Bpu10I	CCTNAGC	2 cut(s)	620, 666
BsaAI	YACGTR	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	473, 836
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	1 cut(s)	817
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 220, 837
Bse1I	ACTGG	3 cut(s)	151, 414, 812
BseBI	CCWGG	3 cut(s)	474, 690, 838
BseDI	CCNNGG	2 cut(s)	473, 836
BseGI	GGATG	3 cut(s)	12, 676, 685
BseLI	CCNNNNNNNGG	3 cut(s)	27, 220, 837
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	3 cut(s)	151, 414, 812
BseRI	GAGGAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	31, 150
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	2 cut(s)	508, 524
BslI	CCNNNNNNNGG	3 cut(s)	27, 220, 837
BsmAI	GTCTC	2 cut(s)	375, 630
BsmFI	GGGAC	2 cut(s)	508, 524
BsnI	GGCC	2 cut(s)	31, 150
Bso31I	GGTCTC	1 cut(s)	630
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	4 cut(s)	270, 581, 662, 820
BspANI	GGCC	2 cut(s)	31, 150
BspCNI	CTCAG	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	19, 262
BspTNI	GGTCTC	1 cut(s)	630
BsrBI	CCGCTC	1 cut(s)	820
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	3 cut(s)	151, 414, 812
BssECI	CCNNGG	2 cut(s)	473, 836
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	3 cut(s)	474, 690, 838
Bst4CI	ACNGT	2 cut(s)	398, 715
BstACI	GRCGYC	1 cut(s)	66
BstAUI	TGTACA	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	148, 274, 585, 822
BstDEI	CTNAG	3 cut(s)	287, 620, 666
BstF5I	GGATG	3 cut(s)	12, 676, 685
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	375, 630
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 671
BstNI	CCWGG	3 cut(s)	474, 690, 838
BstNSI	RCATGY	2 cut(s)	370, 520
BstSCI	CCNGG	3 cut(s)	472, 688, 836
BstSLI	GKGCMC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	31, 150
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	12, 676, 685
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	433, 819
Cac8I	GCNNGC	4 cut(s)	148, 274, 585, 822
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	4 cut(s)	18, 30, 190, 261
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	154, 364, 520
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	5 cut(s)	134, 184, 367, 517, 556
CviQI	GTAC	3 cut(s)	154, 364, 520
DdeI	CTNAG	3 cut(s)	287, 620, 666
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	630
Eco47I	GGWCC	3 cut(s)	18, 190, 261
Eco57I	CTGAAG	1 cut(s)	68
Eco72I	CACGTG	1 cut(s)	171
EcoO109I	RGGNCCY	2 cut(s)	18, 261
EcoRII	CCWGG	3 cut(s)	472, 688, 836
FaeI	CATG	5 cut(s)	137, 187, 370, 520, 559
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	2 cut(s)	508, 524
FatI	CATG	5 cut(s)	133, 183, 366, 516, 555
FauI	CCCGC	1 cut(s)	813
FauNDI	CATATG	2 cut(s)	77, 794
Fnu4HI	GCNGC	2 cut(s)	581, 663
FokI	GGATG	3 cut(s)	19, 672, 683
Fsp4HI	GCNGC	2 cut(s)	581, 663
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	2 cut(s)	581, 663
HaeIII	GGCC	2 cut(s)	31, 150
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	5 cut(s)	137, 187, 370, 520, 559
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	2 cut(s)	211, 316
HindII	GTYRAC	2 cut(s)	211, 316
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	1 cut(s)	682
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	1 cut(s)	748
Hpy166II	GTNNAC	4 cut(s)	83, 211, 316, 380
Hpy188III	TCNNGA	4 cut(s)	377, 629, 668, 785
Hpy8I	GTNNAC	4 cut(s)	83, 211, 316, 380
HpyAV	CCTTC	3 cut(s)	50, 213, 251
HpyCH4III	ACNGT	2 cut(s)	398, 715
HpyCH4IV	ACGT	2 cut(s)	170, 318
HpyCH4V	TGCA	5 cut(s)	83, 174, 242, 276, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 671
HpyF3I	CTNAG	3 cut(s)	287, 620, 666
HpySE526I	ACGT	2 cut(s)	170, 318
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	137, 187, 370, 520, 559
HspAI	GCGC	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	817
LweI	GCATC	3 cut(s)	133, 285, 661
MaeII	ACGT	2 cut(s)	170, 318
MaeIII	GTNAC	2 cut(s)	280, 736
MalI	GATC	1 cut(s)	182
MbiI	CCGCTC	1 cut(s)	820
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	1 cut(s)	459
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	6 cut(s)	274, 384, 686, 757, 792, 838
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	3 cut(s)	474, 690, 838
MvaI	CCWGG	3 cut(s)	474, 690, 838
MwoI	GCNNNNNNNGC	2 cut(s)	611, 671
NdeI	CATATG	2 cut(s)	77, 794
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	5 cut(s)	137, 187, 370, 520, 559
NlaIV	GGNNCC	2 cut(s)	19, 262
NmuCI	GTSAC	2 cut(s)	280, 736
NspI	RCATGY	2 cut(s)	370, 520
PciI	ACATGT	2 cut(s)	366, 516
PcsI	WCGNNNNNNNCGW	2 cut(s)	176, 382
PfeI	GAWTC	1 cut(s)	682
PflMI	CCANNNNNTGG	1 cut(s)	837
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	582, 664
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	171
PpuMI	RGGWCCY	2 cut(s)	18, 261
PscI	ACATGT	2 cut(s)	366, 516
Psp1406I	AACGTT	1 cut(s)	318
Psp5II	RGGWCCY	2 cut(s)	18, 261
Psp6I	CCWGG	3 cut(s)	472, 688, 836
PspCI	CACGTG	1 cut(s)	171
PspGI	CCWGG	3 cut(s)	472, 688, 836
PspN4I	GGNNCC	2 cut(s)	19, 262
PspPI	GGNCC	4 cut(s)	18, 30, 190, 261
PspPPI	RGGWCCY	2 cut(s)	18, 261
RsaI	GTAC	3 cut(s)	155, 365, 521
RsaNI	GTAC	3 cut(s)	154, 364, 520
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	2 cut(s)	581, 663
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	4 cut(s)	18, 30, 190, 261
ScrFI	CCNGG	3 cut(s)	474, 690, 838
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	8 cut(s)	173, 238, 321, 626, 644, 727, 784, 830
SfaNI	GCATC	3 cut(s)	133, 285, 661
SinI	GGWCC	3 cut(s)	18, 190, 261
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	4 cut(s)	270, 581, 662, 820
StyD4I	CCNGG	3 cut(s)	472, 688, 836
TaaI	ACNGT	2 cut(s)	398, 715
TaiI	ACGT	2 cut(s)	173, 321
TaqI	TCGA	2 cut(s)	179, 456
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	1 cut(s)	459
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	2 cut(s)	583, 665
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	433, 819
TseFI	GTSAC	2 cut(s)	280, 736
Tsp45I	GTSAC	2 cut(s)	280, 736
TspDTI	ATGAA	2 cut(s)	64, 590
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	2 cut(s)	433, 819
Van91I	CCANNNNNTGG	1 cut(s)	837
VneI	GTGCAC	1 cut(s)	81
VpaK11BI	GGWCC	3 cut(s)	18, 190, 261
XceI	RCATGY	2 cut(s)	370, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.