Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Forward (+)

8987903 .. 8989335

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G157000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATGATCGCCAACACCAAGCCTGCATTCGGTGGTTATGGCTATGGCTATGGCTATGGAGGCTGTCAAGAATTTATAACAACAACAAGACATGATAAATTGGGTAGAAAAAGGAAGTTGAATAACCCTGATCTACTTCAAGAATTAGGGCAGAATCGGAGGAACATTCATAATGAGAAGACGACGATGGTTTGTGGGTCGTGCTATCTGCCCAAAGACAACCCAAACAAGCCTCTAGGCGAAGACGCCCATTTCATGTGCCAAGACTCCCAGATCATCGGCGTGGCGGACGGCGTCGGCGGTTGGGCCAAGATAGGCGTCGACGCGGGCGAGTACGCTAGGGGACTCATGAACAACGCCAAAAAAATGGCAGCCGCCAATACCACAGCCACAGTCGATCCAAGAAAGGTGTTGAGCCAAGCCTACGCGAACAACGCCGGACTACAAGGCTCGTCAACGGCTTGCATCCTTAGCTTGGACAAAGAGCGTGGGGTCCTGCACGCCGTGAATGTCGGGGACAGCGGGTTCATGGTGTTCAGGGACAGCAAGTGTTGGTTCAAGTCTCCACCTCAGCAGCGCATGTTTAATTGTCCGTACCAATTGGGGAACCACGTGGGCGGCGACTGTCCTGAGGCGGCTCTGGAGTTTGTGGTGGAGGCAATAGTCCCGGGGGACATCATAGTGCTCGGGACAGACGGGTTGCTGGACAACATATTTGCGAGTGAGATTGAGGATGTTCTTGTGGCTTATAGAGGCAGCGGTCGGGATTGTGACGAGTTGGCTTCCGCGATAGCCAACCTAGCGCTGTTTAACTCGATGGACAAATACAGCGTTAGCCCTTTTCAGATGGAGGCTGAGAAGGCGGGACTGAAGCACGCGGGAGGCAAGATCGACGACATCACTGTTGTTGTGGCCCAAATTGTGGCTTCTAGTACCTCCTTCACTACACCAGCTAGCTTAGGTTTCGGTTTTGAACAAACAAATACAAAAAGAAAAAGAGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

336

Amino Acids

36.11

Weight (kDa)

5.92

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	4 cut(s)	326, 428, 788, 878
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	890
AcvI	CACGTG	1 cut(s)	613
AcyI	GRCGYC	3 cut(s)	246, 294, 318
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	3 cut(s)	335, 596, 934
AfeI	AGCGCT	1 cut(s)	804
AfiI	CCNNNNNNNGG	3 cut(s)	29, 475, 922
AgsI	TTSAA	4 cut(s)	121, 140, 559, 974
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AloI	GAACNNNNNNTCC	2 cut(s)	509, 541
AluBI	AGCT	3 cut(s)	474, 953, 957
AluI	AGCT	3 cut(s)	474, 953, 957
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	392
Ama87I	CYCGRG	2 cut(s)	667, 686
Aor51HI	AGCGCT	1 cut(s)	804
AoxI	GGCC	2 cut(s)	306, 912
ApeKI	GCWGC	3 cut(s)	371, 574, 756
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AspLEI	GCGC	2 cut(s)	579, 805
AspS9I	GGNCC	3 cut(s)	306, 493, 913
AsuC2I	CCSGG	2 cut(s)	668, 669
AsuNHI	GCTAGC	1 cut(s)	953
AvaI	CYCGRG	2 cut(s)	667, 686
AvaII	GGWCC	1 cut(s)	493
AxyI	CCTNAGG	1 cut(s)	630
BbrPI	CACGTG	1 cut(s)	613
BbsI	GAAGAC	2 cut(s)	185, 249
Bbv12I	GWGCWC	1 cut(s)	687
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	383, 586, 768
BccI	CCATC	3 cut(s)	181, 811, 841
BceAI	ACGGC	3 cut(s)	307, 474, 488
BcnI	CCSGG	2 cut(s)	668, 669
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	5 cut(s)	236, 339, 800, 930, 954
BfoI	RGCGCY	1 cut(s)	806
BisI	GCNGC	6 cut(s)	372, 375, 575, 619, 636, 757
BlsI	GCNGC	6 cut(s)	373, 376, 576, 620, 637, 758
Bme1390I	CCNGG	2 cut(s)	668, 669
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	2 cut(s)	667, 686
BmgT120I	GGNCC	3 cut(s)	306, 493, 913
BmiI	GGNNCC	2 cut(s)	494, 608
BmrFI	CCNGG	2 cut(s)	668, 669
BmsI	GCATC	1 cut(s)	474
BmtI	GCTAGC	1 cut(s)	957
BpiI	GAAGAC	2 cut(s)	185, 249
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	3 cut(s)	470, 570, 958
BpuMI	CCSGG	2 cut(s)	668, 669
BsaAI	YACGTR	1 cut(s)	613
BsaHI	GRCGYC	3 cut(s)	246, 294, 318
BsaJI	CCNNGG	2 cut(s)	667, 668
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 475, 922
Bse21I	CCTNAGG	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	667, 668
BseGI	GGATG	2 cut(s)	465, 739
BseLI	CCNNNNNNNGG	3 cut(s)	29, 475, 922
BseMII	CTCAG	3 cut(s)	584, 621, 846
BseXI	GCAGC	3 cut(s)	383, 586, 768
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	4 cut(s)	326, 428, 788, 878
Bsh1285I	CGRYCG	1 cut(s)	763
BshFI	GGCC	2 cut(s)	308, 914
BsiEI	CGRYCG	1 cut(s)	763
BsiHKAI	GWGCWC	1 cut(s)	687
BsiHKCI	CYCGRG	2 cut(s)	667, 686
BsiSI	CCGG	2 cut(s)	438, 668
BslFI	GGGAC	7 cut(s)	357, 530, 554, 650, 686, 703, 879
BslI	CCNNNNNNNGG	3 cut(s)	29, 475, 922
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	7 cut(s)	357, 530, 554, 650, 686, 703, 879
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	308, 914
BsoBI	CYCGRG	2 cut(s)	667, 686
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	5 cut(s)	6, 130, 273, 397, 888
BspANI	GGCC	2 cut(s)	308, 914
BspCNI	CTCAG	3 cut(s)	583, 622, 847
BspFNI	CGCG	4 cut(s)	326, 428, 788, 878
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	494, 608
BspOI	GCTAGC	1 cut(s)	957
BspPI	GGATC	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	667, 668
BssMI	GATC	5 cut(s)	6, 130, 273, 397, 888
BssNI	GRCGYC	3 cut(s)	246, 294, 318
Bst4CI	ACNGT	3 cut(s)	394, 626, 904
BstACI	GRCGYC	3 cut(s)	246, 294, 318
BstBAI	YACGTR	1 cut(s)	613
BstC8I	GCNNGC	6 cut(s)	24, 328, 463, 501, 876, 955
BstDEI	CTNAG	5 cut(s)	470, 570, 630, 855, 958
BstF5I	GGATG	2 cut(s)	465, 739
BstFNI	CGCG	4 cut(s)	326, 428, 788, 878
BstH2I	RGCGCY	1 cut(s)	806
BstHHI	GCGC	2 cut(s)	579, 805
BstKTI	GATC	5 cut(s)	9, 133, 276, 400, 891
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	5 cut(s)	6, 130, 273, 397, 888
BstMCI	CGRYCG	1 cut(s)	763
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 434, 471, 800, 860
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	666, 667
BstUI	CGCG	4 cut(s)	326, 428, 788, 878
BstV1I	GCAGC	3 cut(s)	383, 586, 768
BstV2I	GAAGAC	2 cut(s)	185, 249
BstXI	CCANNNNNNTGG	1 cut(s)	367
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	308, 914
BtsCI	GGATG	2 cut(s)	465, 739
BtsIMutI	CAGTG	1 cut(s)	900
Cac8I	GCNNGC	6 cut(s)	24, 328, 463, 501, 876, 955
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	2 cut(s)	579, 805
Cfr13I	GGNCC	3 cut(s)	306, 493, 913
Cfr9I	CCCGGG	1 cut(s)	667
CseI	GACGC	4 cut(s)	254, 283, 307, 332
Csp6I	GTAC	3 cut(s)	334, 595, 933
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	5 cut(s)	92, 256, 349, 529, 580
CviQI	GTAC	3 cut(s)	334, 595, 933
DdeI	CTNAG	5 cut(s)	470, 570, 630, 855, 958
DpnI	GATC	5 cut(s)	8, 132, 275, 399, 890
DpnII	GATC	5 cut(s)	6, 130, 273, 397, 888
DraIII	CACNNNGTG	1 cut(s)	505
EciI	GGCGGA	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	493
Eco47III	AGCGCT	1 cut(s)	804
Eco57I	CTGAAG	1 cut(s)	890
Eco72I	CACGTG	1 cut(s)	613
Eco81I	CCTNAGG	1 cut(s)	630
Eco88I	CYCGRG	2 cut(s)	667, 686
EcoO109I	RGGNCCY	1 cut(s)	493
FaeI	CATG	5 cut(s)	95, 259, 352, 532, 583
FaqI	GGGAC	7 cut(s)	357, 530, 554, 650, 686, 703, 879
FatI	CATG	5 cut(s)	91, 255, 348, 528, 579
FauI	CCCGC	4 cut(s)	319, 515, 856, 871
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	6 cut(s)	372, 375, 575, 619, 636, 757
FokI	GGATG	2 cut(s)	452, 746
Fsp4HI	GCNGC	6 cut(s)	372, 375, 575, 619, 636, 757
FspBI	CTAG	5 cut(s)	236, 339, 800, 930, 954
GlaI	GCGC	2 cut(s)	578, 804
GluI	GCNGC	6 cut(s)	372, 375, 575, 619, 636, 757
GsuI	CTGGAG	1 cut(s)	662
HaeII	RGCGCY	1 cut(s)	806
HaeIII	GGCC	2 cut(s)	308, 914
HapII	CCGG	2 cut(s)	438, 668
HgaI	GACGC	4 cut(s)	254, 283, 307, 332
HhaI	GCGC	2 cut(s)	579, 805
Hin1I	GRCGYC	3 cut(s)	246, 294, 318
Hin1II	CATG	5 cut(s)	95, 259, 352, 532, 583
Hin6I	GCGC	2 cut(s)	577, 803
HinP1I	GCGC	2 cut(s)	577, 803
HincII	GTYRAC	2 cut(s)	322, 456
HindII	GTYRAC	2 cut(s)	322, 456
HinfI	GANTC	3 cut(s)	154, 266, 345
HpaII	CCGG	2 cut(s)	438, 668
Hpy166II	GTNNAC	2 cut(s)	322, 456
Hpy188I	TCNGA	2 cut(s)	159, 846
Hpy188III	TCNNGA	7 cut(s)	68, 140, 349, 629, 641, 688, 764
Hpy8I	GTNNAC	2 cut(s)	322, 456
Hpy99I	CGWCG	5 cut(s)	187, 299, 323, 326, 896
HpyAV	CCTTC	2 cut(s)	853, 949
HpyCH4III	ACNGT	3 cut(s)	394, 626, 904
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	3 cut(s)	26, 465, 499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 434, 471, 800, 860
HpyF3I	CTNAG	5 cut(s)	470, 570, 630, 855, 958
HpySE526I	ACGT	1 cut(s)	612
Hsp92I	GRCGYC	3 cut(s)	246, 294, 318
Hsp92II	CATG	5 cut(s)	95, 259, 352, 532, 583
HspAI	GCGC	2 cut(s)	577, 803
Kzo9I	GATC	5 cut(s)	6, 130, 273, 397, 888
Lsp1109I	GCAGC	3 cut(s)	383, 586, 768
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	5 cut(s)	236, 339, 800, 930, 954
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	5 cut(s)	8, 132, 275, 399, 890
MboI	GATC	5 cut(s)	6, 130, 273, 397, 888
MboII	GAAGA	2 cut(s)	190, 254
MfeI	CAATTG	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	6 cut(s)	71, 98, 143, 586, 599, 918
MlyI	GAGTC	2 cut(s)	260, 339
MseI	TTAA	2 cut(s)	585, 810
MslI	CAYNNNNRTG	2 cut(s)	281, 680
MspA1I	CMGCKG	2 cut(s)	522, 759
MspI	CCGG	2 cut(s)	438, 668
MspR9I	CCNGG	2 cut(s)	668, 669
MunI	CAATTG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	26
MvnI	CGCG	4 cut(s)	326, 428, 788, 878
MwoI	GCNNNNNNNGC	5 cut(s)	60, 434, 471, 800, 860
NciI	CCSGG	2 cut(s)	668, 669
NdeII	GATC	5 cut(s)	6, 130, 273, 397, 888
NheI	GCTAGC	1 cut(s)	953
NlaIII	CATG	5 cut(s)	95, 259, 352, 532, 583
NlaIV	GGNNCC	2 cut(s)	494, 608
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	1 cut(s)	583
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 618
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	154
PflFI	GACNNNGTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	922
PkrI	GCNGC	6 cut(s)	373, 376, 576, 620, 637, 758
PleI	GAGTC	2 cut(s)	260, 339
PmaCI	CACGTG	1 cut(s)	613
PmlI	CACGTG	1 cut(s)	613
PpsI	GAGTC	2 cut(s)	260, 339
Ppu21I	YACGTR	1 cut(s)	613
PpuMI	RGGWCCY	1 cut(s)	493
PsiI	TTATAA	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	493
PspCI	CACGTG	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	494, 608
PspPI	GGNCC	3 cut(s)	306, 493, 913
PspPPI	RGGWCCY	1 cut(s)	493
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	335, 596, 934
RsaNI	GTAC	3 cut(s)	334, 595, 933
RseI	CAYNNNNRTG	2 cut(s)	281, 680
SalI	GTCGAC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	585, 810
SatI	GCNGC	6 cut(s)	372, 375, 575, 619, 636, 757
Sau3AI	GATC	5 cut(s)	6, 130, 273, 397, 888
Sau96I	GGNCC	3 cut(s)	306, 493, 913
SchI	GAGTC	2 cut(s)	260, 339
ScrFI	CCNGG	2 cut(s)	668, 669
SduI	GDGCHC	1 cut(s)	687
SetI	ASST	9 cut(s)	411, 476, 571, 615, 801, 938, 955, 959, 964
SfaNI	GCATC	1 cut(s)	474
SgrDI	CGTCGACG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	493
SmaI	CCCGGG	1 cut(s)	669
SmiMI	CAYNNNNRTG	2 cut(s)	281, 680
Sse9I	AATT	6 cut(s)	71, 98, 143, 586, 599, 918
SspMI	CTAG	5 cut(s)	236, 339, 800, 930, 954
StyD4I	CCNGG	2 cut(s)	666, 667
TaaI	ACNGT	3 cut(s)	394, 626, 904
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	4 cut(s)	321, 396, 815, 891
TasI	AATT	6 cut(s)	71, 98, 143, 586, 599, 918
TauI	GCSGC	3 cut(s)	377, 621, 638
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	585, 810
Tru9I	TTAA	2 cut(s)	585, 810
TscAI	CASTG	1 cut(s)	907
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	3 cut(s)	371, 574, 756
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	4 cut(s)	158, 244, 365, 517
TspGWI	ACGGA	1 cut(s)	582
TspMI	CCCGGG	1 cut(s)	667
TspRI	CASTG	1 cut(s)	907
Tth111I	GACNNNGTC	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	922
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	583
XmaI	CCCGGG	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	5 cut(s)	236, 339, 800, 930, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.